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PMC:1941754 / 24408-25360 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T4381 0-2 TO denotes To
T4382 3-9 VB denotes assess
T4383 200-207 VBD denotes treated
T4384 10-17 IN denotes whether
T4385 75-84 VBP denotes represent
T4386 18-23 DT denotes these
T4387 31-35 NNS denotes foci
T4388 24-28 NN denotes MLH1
T4389 28-29 HYPH denotes /
T4390 29-30 CD denotes 3
T4391 36-38 IN denotes in
T4392 39-47 NN denotes Trip13Gt
T4393 48-50 NN denotes Gt
T4394 47-48 HYPH denotes /
T4395 51-60 NN denotes pachytene
T4396 61-74 NNS denotes spermatocytes
T4397 85-87 NN denotes CO
T4398 88-94 NNS denotes events
T4399 95-104 VBN denotes completed
T4400 105-107 IN denotes to
T4401 108-109 DT denotes a
T4402 110-115 NN denotes point
T4403 116-121 WRB denotes where
T4404 133-141 VB denotes maintain
T4405 122-126 PRP denotes they
T4406 127-132 MD denotes could
T4407 142-154 JJ denotes interhomolog
T4408 155-166 NNS denotes attachments
T4409 167-173 IN denotes though
T4410 174-177 DT denotes the
T4411 178-181 NN denotes end
T4412 182-184 IN denotes of
T4413 185-193 NN denotes prophase
T4414 194-195 CD denotes I
T4415 195-197 , denotes ,
T4416 197-199 PRP denotes we
T4417 208-218 JJ denotes testicular
T4418 219-224 NNS denotes cells
T4419 225-229 IN denotes from
T4420 230-234 CD denotes 17.5
T4421 235-239 CD denotes 20.5
T4422 234-235 SYM denotes –
T4423 240-241 NN denotes d
T4424 239-240 HYPH denotes -
T4425 242-245 JJ denotes old
T4426 241-242 HYPH denotes -
T4427 287-291 NNS denotes mice
T4428 246-253 NN denotes control
T4429 254-255 -LRB- denotes (
T4430 255-256 SYM denotes +
T4431 257-258 SYM denotes +
T4432 256-257 HYPH denotes /
T4433 258-259 -RRB- denotes )
T4434 259-261 , denotes ,
T4435 261-269 NN denotes Trip13Gt
T4436 270-272 NN denotes Gt
T4437 269-270 HYPH denotes /
T4438 272-274 , denotes ,
T4439 274-277 CC denotes and
T4440 278-282 NN denotes Dmc1
T4441 283-284 SYM denotes −
T4442 284-285 HYPH denotes /
T4443 285-286 SYM denotes −
T4444 292-296 IN denotes with
T4445 297-300 DT denotes the
T4446 321-330 NN denotes inhibitor
T4447 301-308 NN denotes protein
T4448 309-320 NN denotes phosphatase
T4449 331-338 JJ denotes okadaic
T4450 339-343 NN denotes acid
T4451 344-345 -LRB- denotes (
T4452 345-347 NN denotes OA
T4453 347-348 -RRB- denotes )
T4454 348-350 , denotes ,
T4455 350-351 DT denotes a
T4456 352-360 NN denotes chemical
T4457 361-365 WDT denotes that
T4458 366-373 VBZ denotes induces
T4459 374-385 NN denotes degradation
T4460 386-388 IN denotes of
T4461 389-392 DT denotes the
T4462 393-395 NN denotes SC
T4463 395-397 , denotes ,
T4464 397-407 NN denotes chromosome
T4465 408-420 NN denotes condensation
T4466 420-422 , denotes ,
T4467 422-425 CC denotes and
T4468 426-435 JJ denotes premature
T4469 436-447 NN denotes progression
T4470 448-450 IN denotes to
T4471 451-460 NN denotes metaphase
T4472 461-462 CD denotes I
T4473 463-464 -LRB- denotes [
T4474 464-466 CD denotes 33
T4475 466-467 -RRB- denotes ]
T4476 467-468 . denotes .
T4477 468-529 sentence denotes Fifteen metaphase spreads were identified for each genotype.
T4478 469-476 CD denotes Fifteen
T4479 487-494 NNS denotes spreads
T4480 477-486 NN denotes metaphase
T4481 500-510 VBN denotes identified
T4482 495-499 VBD denotes were
T4483 511-514 IN denotes for
T4484 515-519 DT denotes each
T4485 520-528 NN denotes genotype
T4486 528-529 . denotes .
T4487 529-779 sentence denotes Whereas all of the Dmc1 −/− spreads had ∼35 or more condensed chromosomes, all of the +/+ and Trip13Gt/Gt spreads had 20–25, suggesting that the MLH1/3 foci in Trip13Gt/Gt pachytene spermatocytes represent sites of completed, or near-completed, COs.
T4488 530-537 IN denotes Whereas
T4489 566-569 VBD denotes had
T4490 538-541 DT denotes all
T4491 542-544 IN denotes of
T4492 545-548 DT denotes the
T4493 558-565 NNS denotes spreads
T4494 549-553 NN denotes Dmc1
T4495 554-555 SYM denotes −
T4496 555-556 HYPH denotes /
T4497 556-557 SYM denotes −
T4498 644-647 VBD denotes had
T4499 570-571 SYM denotes ∼
T4500 571-573 CD denotes 35
T4501 592-603 NNS denotes chromosomes
T4502 574-576 CC denotes or
T4503 577-581 JJR denotes more
T4504 582-591 VBN denotes condensed
T4505 603-605 , denotes ,
T4506 605-608 DT denotes all
T4507 609-611 IN denotes of
T4508 612-615 DT denotes the
T4509 636-643 NNS denotes spreads
T4510 616-617 SYM denotes +
T4511 618-619 SYM denotes +
T4512 617-618 HYPH denotes /
T4513 620-623 CC denotes and
T4514 624-632 NN denotes Trip13Gt
T4515 633-635 NN denotes Gt
T4516 632-633 HYPH denotes /
T4517 648-650 CD denotes 20
T4518 651-653 CD denotes 25
T4519 650-651 SYM denotes –
T4520 653-655 , denotes ,
T4521 655-665 VBG denotes suggesting
T4522 666-670 IN denotes that
T4523 726-735 VBP denotes represent
T4524 671-674 DT denotes the
T4525 682-686 NNS denotes foci
T4526 675-679 NN denotes MLH1
T4527 679-680 HYPH denotes /
T4528 680-681 CD denotes 3
T4529 687-689 IN denotes in
T4530 690-698 NN denotes Trip13Gt
T4531 699-701 NN denotes Gt
T4532 698-699 HYPH denotes /
T4533 702-711 NN denotes pachytene
T4534 712-725 NNS denotes spermatocytes
T4535 736-741 NNS denotes sites
T4536 742-744 IN denotes of
T4537 745-754 JJ denotes completed
T4538 775-778 NNS denotes COs
T4539 754-756 , denotes ,
T4540 756-758 CC denotes or
T4541 759-763 RB denotes near
T4542 764-773 JJ denotes completed
T4543 763-764 HYPH denotes -
T4544 773-775 , denotes ,
T4545 778-779 . denotes .
T4546 779-952 sentence denotes Because the preparations were made from whole testes, it is possible that the univalent-containing metaphases from Dmc1 −/− mice were from spermatogonia, not spermatocytes.
T4547 780-787 IN denotes Because
T4548 810-814 VBN denotes made
T4549 788-791 DT denotes the
T4550 792-804 NNS denotes preparations
T4551 805-809 VBD denotes were
T4552 837-839 VBZ denotes is
T4553 815-819 IN denotes from
T4554 820-825 JJ denotes whole
T4555 826-832 NNS denotes testes
T4556 832-834 , denotes ,
T4557 834-836 PRP denotes it
T4558 840-848 JJ denotes possible
T4559 849-853 IN denotes that
T4560 909-913 VBD denotes were
T4561 854-857 DT denotes the
T4562 879-889 NNS denotes metaphases
T4563 858-867 NN denotes univalent
T4564 868-878 VBG denotes containing
T4565 867-868 HYPH denotes -
T4566 890-894 IN denotes from
T4567 895-899 NN denotes Dmc1
T4568 904-908 NNS denotes mice
T4569 900-901 SYM denotes −
T4570 901-902 HYPH denotes /
T4571 902-903 SYM denotes −
T4572 914-918 IN denotes from
T4573 919-932 NNS denotes spermatogonia
T4574 932-934 , denotes ,
T4575 934-937 CC denotes not
T4576 938-951 NNS denotes spermatocytes
T4577 951-952 . denotes .
R2881 T4381 T4382 aux To,assess
R2882 T4382 T4383 advcl assess,treated
R2883 T4384 T4385 mark whether,represent
R2884 T4385 T4382 ccomp represent,assess
R2885 T4386 T4387 det these,foci
R2886 T4387 T4385 nsubj foci,represent
R2887 T4388 T4387 nmod MLH1,foci
R2888 T4389 T4388 punct /,MLH1
R2889 T4390 T4388 nummod 3,MLH1
R2890 T4391 T4387 prep in,foci
R2891 T4392 T4393 compound Trip13Gt,Gt
R2892 T4393 T4395 compound Gt,pachytene
R2893 T4394 T4393 punct /,Gt
R2894 T4395 T4396 compound pachytene,spermatocytes
R2895 T4396 T4391 pobj spermatocytes,in
R2896 T4397 T4398 compound CO,events
R2897 T4398 T4385 dobj events,represent
R2898 T4399 T4398 acl completed,events
R2899 T4400 T4399 prep to,completed
R2900 T4401 T4402 det a,point
R2901 T4402 T4400 pobj point,to
R2902 T4403 T4404 advmod where,maintain
R2903 T4404 T4402 relcl maintain,point
R2904 T4405 T4404 nsubj they,maintain
R2905 T4406 T4404 aux could,maintain
R2906 T4407 T4408 amod interhomolog,attachments
R2907 T4408 T4404 dobj attachments,maintain
R2908 T4409 T4404 prep though,maintain
R2909 T4410 T4411 det the,end
R2910 T4411 T4409 pobj end,though
R2911 T4412 T4411 prep of,end
R2912 T4413 T4412 pobj prophase,of
R2913 T4414 T4413 nummod I,prophase
R2914 T4415 T4383 punct ", ",treated
R2915 T4416 T4383 nsubj we,treated
R2916 T4417 T4418 amod testicular,cells
R2917 T4418 T4383 dobj cells,treated
R2918 T4419 T4418 prep from,cells
R2919 T4420 T4421 quantmod 17.5,20.5
R2920 T4421 T4423 nummod 20.5,d
R2921 T4422 T4421 punct –,20.5
R2922 T4423 T4425 npadvmod d,old
R2923 T4424 T4423 punct -,d
R2924 T4425 T4427 amod old,mice
R2925 T4426 T4425 punct -,old
R2926 T4427 T4419 pobj mice,from
R2927 T4428 T4427 nmod control,mice
R2928 T4429 T4428 punct (,control
R2929 T4430 T4431 punct +,+
R2930 T4431 T4428 appos +,control
R2931 T4432 T4431 punct /,+
R2932 T4433 T4428 punct ),control
R2933 T4434 T4428 punct ", ",control
R2934 T4435 T4436 compound Trip13Gt,Gt
R2935 T4436 T4428 conj Gt,control
R2936 T4437 T4436 punct /,Gt
R2937 T4438 T4436 punct ", ",Gt
R2938 T4439 T4436 cc and,Gt
R2939 T4440 T4436 conj Dmc1,Gt
R2940 T4441 T4440 punct −,Dmc1
R2941 T4442 T4440 punct /,Dmc1
R2942 T4443 T4440 punct −,Dmc1
R2943 T4444 T4383 prep with,treated
R2944 T4445 T4446 det the,inhibitor
R2945 T4446 T4444 pobj inhibitor,with
R2946 T4447 T4448 compound protein,phosphatase
R2947 T4448 T4446 compound phosphatase,inhibitor
R2948 T4449 T4450 amod okadaic,acid
R2949 T4450 T4446 appos acid,inhibitor
R2950 T4451 T4446 punct (,inhibitor
R2951 T4452 T4446 appos OA,inhibitor
R2952 T4453 T4446 punct ),inhibitor
R2953 T4454 T4446 punct ", ",inhibitor
R2954 T4455 T4456 det a,chemical
R2955 T4456 T4446 appos chemical,inhibitor
R2956 T4457 T4458 dep that,induces
R2957 T4458 T4456 relcl induces,chemical
R2958 T4459 T4458 dobj degradation,induces
R2959 T4460 T4459 prep of,degradation
R2960 T4461 T4462 det the,SC
R2961 T4462 T4460 pobj SC,of
R2962 T4463 T4459 punct ", ",degradation
R2963 T4464 T4465 compound chromosome,condensation
R2964 T4465 T4459 conj condensation,degradation
R2965 T4466 T4465 punct ", ",condensation
R2966 T4467 T4465 cc and,condensation
R2967 T4468 T4469 amod premature,progression
R2968 T4469 T4465 conj progression,condensation
R2969 T4470 T4469 prep to,progression
R2970 T4471 T4470 pobj metaphase,to
R2971 T4472 T4471 nummod I,metaphase
R2972 T4473 T4474 punct [,33
R2973 T4474 T4383 parataxis 33,treated
R2974 T4475 T4474 punct ],33
R2975 T4476 T4383 punct .,treated
R2976 T4478 T4479 nummod Fifteen,spreads
R2977 T4479 T4481 nsubjpass spreads,identified
R2978 T4480 T4479 compound metaphase,spreads
R2979 T4482 T4481 auxpass were,identified
R2980 T4483 T4481 prep for,identified
R2981 T4484 T4485 det each,genotype
R2982 T4485 T4483 pobj genotype,for
R2983 T4486 T4481 punct .,identified
R2984 T4488 T4489 mark Whereas,had
R2985 T4489 T4498 advcl had,had
R2986 T4490 T4489 nsubj all,had
R2987 T4491 T4490 prep of,all
R2988 T4492 T4493 det the,spreads
R2989 T4493 T4491 pobj spreads,of
R2990 T4494 T4493 nmod Dmc1,spreads
R2991 T4495 T4494 punct −,Dmc1
R2992 T4496 T4494 punct /,Dmc1
R2993 T4497 T4494 punct −,Dmc1
R2994 T4499 T4500 punct ∼,35
R2995 T4500 T4501 nummod 35,chromosomes
R2996 T4501 T4489 dobj chromosomes,had
R2997 T4502 T4500 cc or,35
R2998 T4503 T4500 conj more,35
R2999 T4504 T4501 amod condensed,chromosomes
R3000 T4505 T4498 punct ", ",had
R3001 T4506 T4498 nsubj all,had
R3002 T4507 T4506 prep of,all
R3003 T4508 T4509 det the,spreads
R3004 T4509 T4507 pobj spreads,of
R3005 T4510 T4511 punct +,+
R3006 T4511 T4509 punct +,spreads
R3007 T4512 T4511 punct /,+
R3008 T4513 T4511 cc and,+
R3009 T4514 T4515 compound Trip13Gt,Gt
R3010 T4515 T4511 conj Gt,+
R3011 T4516 T4515 punct /,Gt
R3012 T4517 T4518 quantmod 20,25
R3013 T4518 T4498 dobj 25,had
R3014 T4519 T4518 punct –,25
R3015 T4520 T4498 punct ", ",had
R3016 T4521 T4498 advcl suggesting,had
R3017 T4522 T4523 mark that,represent
R3018 T4523 T4521 ccomp represent,suggesting
R3019 T4524 T4525 det the,foci
R3020 T4525 T4523 nsubj foci,represent
R3021 T4526 T4525 nmod MLH1,foci
R3022 T4527 T4526 punct /,MLH1
R3023 T4528 T4526 nummod 3,MLH1
R3024 T4529 T4525 prep in,foci
R3025 T4530 T4531 compound Trip13Gt,Gt
R3026 T4531 T4533 compound Gt,pachytene
R3027 T4532 T4531 punct /,Gt
R3028 T4533 T4534 compound pachytene,spermatocytes
R3029 T4534 T4529 pobj spermatocytes,in
R3030 T4535 T4523 dobj sites,represent
R3031 T4536 T4535 prep of,sites
R3032 T4537 T4538 amod completed,COs
R3033 T4538 T4536 pobj COs,of
R3034 T4539 T4537 punct ", ",completed
R3035 T4540 T4537 cc or,completed
R3036 T4541 T4542 advmod near,completed
R3037 T4542 T4537 conj completed,completed
R3038 T4543 T4542 punct -,completed
R3039 T4544 T4538 punct ", ",COs
R3040 T4545 T4498 punct .,had
R3041 T4547 T4548 mark Because,made
R3042 T4548 T4552 advcl made,is
R3043 T4549 T4550 det the,preparations
R3044 T4550 T4548 nsubjpass preparations,made
R3045 T4551 T4548 auxpass were,made
R3046 T4553 T4548 prep from,made
R3047 T4554 T4555 amod whole,testes
R3048 T4555 T4553 pobj testes,from
R3049 T4556 T4552 punct ", ",is
R3050 T4557 T4552 nsubj it,is
R3051 T4558 T4552 acomp possible,is
R3052 T4559 T4560 mark that,were
R3053 T4560 T4552 ccomp were,is
R3054 T4561 T4562 det the,metaphases
R3055 T4562 T4560 nsubj metaphases,were
R3056 T4563 T4564 npadvmod univalent,containing
R3057 T4564 T4562 amod containing,metaphases
R3058 T4565 T4564 punct -,containing
R3059 T4566 T4562 prep from,metaphases
R3060 T4567 T4568 nmod Dmc1,mice
R3061 T4568 T4566 pobj mice,from
R3062 T4569 T4567 punct −,Dmc1
R3063 T4570 T4567 punct /,Dmc1
R3064 T4571 T4567 punct −,Dmc1
R3065 T4572 T4560 prep from,were
R3066 T4573 T4572 pobj spermatogonia,from
R3067 T4574 T4573 punct ", ",spermatogonia
R3068 T4575 T4573 cc not,spermatogonia
R3069 T4576 T4573 conj spermatocytes,spermatogonia
R3070 T4577 T4552 punct .,is

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4004 24-28 PR:000010442 denotes MLH1
T4005 39-45 PR:000016672 denotes Trip13
T4006 51-60 GO:0000239 denotes pachytene
T4007 61-74 CL:0000017 denotes spermatocytes
T4008 85-87 GO:0035825 denotes CO
T4009 185-195 GO:0007128 denotes prophase I
T4010 208-218 UBERON:0000473 denotes testicular
T4011 261-267 PR:000016672 denotes Trip13
T4012 278-282 PR:000006536 denotes Dmc1
T4013 287-291 NCBITaxon:10088 denotes mice
T4014 321-330 CHEBI:35222 denotes inhibitor
T4015 331-343 CHEBI:44658 denotes okadaic acid
T4016 345-347 CHEBI:44658 denotes OA
T4017 374-388 _FRAGMENT denotes degradation of
T4018 393-395 GO:0070194 denotes SC
T4019 393-395 GO:0000795 denotes SC
T4020 397-420 GO:0030261 denotes chromosome condensation
T4021 451-462 GO:0007132 denotes metaphase I
T4022 477-486 GO:0051323 denotes metaphase
T4023 549-553 PR:000006536 denotes Dmc1
T4024 582-603 GO:0000793 denotes condensed chromosomes
T4025 624-630 PR:000016672 denotes Trip13
T4026 675-679 PR:000010442 denotes MLH1
T4027 690-696 PR:000016672 denotes Trip13
T4028 702-711 GO:0000239 denotes pachytene
T4029 712-725 CL:0000017 denotes spermatocytes
T4030 775-778 GO:0035825 denotes COs
T4031 826-832 UBERON:0000473 denotes testes
T4032 879-889 GO:0051323 denotes metaphases
T4033 895-899 PR:000006536 denotes Dmc1
T4034 904-908 NCBITaxon:10088 denotes mice
T4035 919-932 CL:0000020 denotes spermatogonia
T4036 938-951 CL:0000017 denotes spermatocytes
R2645 T4018 T4017 _lexicallyChainedTo SC,degradation of

2_test

Id Subject Object Predicate Lexical cue
17696610-7781899-85497913 464-466 7781899 denotes 33
T46660 464-466 7781899 denotes 33

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4083 24-28 PR_EXT:000010442 denotes MLH1
T4084 39-45 PR_EXT:000016672 denotes Trip13
T4085 51-60 GO:0000239 denotes pachytene
T4086 61-74 CL:0000017 denotes spermatocytes
T4087 85-87 GO:0035825 denotes CO
T4088 185-195 GO:0007128 denotes prophase I
T4089 208-218 UBERON:0000473 denotes testicular
T4090 219-224 CL_GO_EXT:cell denotes cells
T4091 255-256 SO_EXT:normal_or_wild_type_or_present denotes +
T4092 257-258 SO_EXT:normal_or_wild_type_or_present denotes +
T4093 261-267 PR_EXT:000016672 denotes Trip13
T4094 278-282 PR_EXT:000006536 denotes Dmc1
T4095 283-284 SO_EXT:sequence_nullness_or_absence denotes −
T4096 285-286 SO_EXT:sequence_nullness_or_absence denotes −
T4097 287-291 NCBITaxon:10088 denotes mice
T4098 301-308 CHEBI_PR_EXT:protein denotes protein
T4099 301-330 CHEBI_GO_EXT:phosphoprotein_phosphatase_inhibitor denotes protein phosphatase inhibitor
T4100 321-330 CHEBI_EXT:35222 denotes inhibitor
T4101 331-343 CHEBI:44658 denotes okadaic acid
T4102 345-347 CHEBI:44658 denotes OA
T4103 352-360 CHEBI_EXT:chemical_substance_or_polyatomic_entity denotes chemical
T4104 374-388 _FRAGMENT denotes degradation of
T4105 393-395 GO:0070194 denotes SC
T4106 393-395 GO:0000795 denotes SC
T4107 397-407 GO_SO_EXT:chromosome denotes chromosome
T4108 397-420 GO:0030261 denotes chromosome condensation
T4109 451-462 GO:0007132 denotes metaphase I
T4110 477-486 GO:0051323 denotes metaphase
T4111 520-528 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T4112 549-553 PR_EXT:000006536 denotes Dmc1
T4113 554-555 SO_EXT:sequence_nullness_or_absence denotes −
T4114 556-557 SO_EXT:sequence_nullness_or_absence denotes −
T4115 582-603 GO:0000793 denotes condensed chromosomes
T4116 592-603 GO_SO_EXT:chromosome denotes chromosomes
T4117 616-617 SO_EXT:normal_or_wild_type_or_present denotes +
T4118 618-619 SO_EXT:normal_or_wild_type_or_present denotes +
T4119 624-630 PR_EXT:000016672 denotes Trip13
T4120 675-679 PR_EXT:000010442 denotes MLH1
T4121 690-696 PR_EXT:000016672 denotes Trip13
T4122 702-711 GO:0000239 denotes pachytene
T4123 712-725 CL:0000017 denotes spermatocytes
T4124 775-778 GO:0035825 denotes COs
T4125 826-832 UBERON:0000473 denotes testes
T4126 879-889 GO:0051323 denotes metaphases
T4127 895-899 PR_EXT:000006536 denotes Dmc1
T4128 900-901 SO_EXT:sequence_nullness_or_absence denotes −
T4129 902-903 SO_EXT:sequence_nullness_or_absence denotes −
T4130 904-908 NCBITaxon:10088 denotes mice
T4131 919-932 CL:0000020 denotes spermatogonia
T4132 938-951 CL:0000017 denotes spermatocytes
R2646 T4105 T4104 _lexicallyChainedTo SC,degradation of