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elucidate the cause of meiotic arrest, we analyzed meiotic chromosomes with a variety of markers that are diagnostic of recombination and synapsis. Recombination in Trip13Gt/Gt spermatocytes appeared to initiate normally as judged by the presence of γH2AX in leptonema (Figure S2A and S2B), which reflects the presence of meiotically induced DSBs [18]. RAD51 and/or DMC1, components of early recombination nodules (ERNs), was also present as abundant foci in Trip13Gt/Gt zygotene spermatocytes (unpublished data; the anti-RAD51 antibody cross-reacts with DMC1), indicating that recombinational repair of DSBs is initiated. The cohesin complex, which is essential for completion and/or maintenance of synaptic associations, appeared to assemble normally as judged by immunolabeling for the meiosis-specific cohesins STAG3 (Figure S2C and S2D) and REC8 (unpublished data). Because yeast PCH2 localizes to telomeres in a Sir3p-dependent manner, we tested for possible telomere defects by immunolabeling for TRF2, a component of a protein complex that plays an essential role in telomere protection [19]. It was localized to telomeres of both fully synapsed and telomerically asynaptic mutant chromosomes (Figure S2E and S2F)."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T2633","span":{"begin":11,"end":12},"obj":"GO:0007129"},{"id":"T2634","span":{"begin":20,"end":22},"obj":"CL:0000017"},{"id":"T2635","span":{"begin":27,"end":28},"obj":"GO:0030849"},{"id":"T2636","span":{"begin":47,"end":48},"obj":"GO:0000239"},{"id":"T2637","span":{"begin":54,"end":61},"obj":"GO:0007126"},{"id":"T2638","span":{"begin":62,"end":63},"obj":"GO:0007126"},{"id":"T2639","span":{"begin":141,"end":149},"obj":"GO:0007129"},{"id":"T2640","span":{"begin":168,"end":174},"obj":"PR:000016672"},{"id":"T2641","span":{"begin":180,"end":193},"obj":"CL:0000017"},{"id":"T2642","span":{"begin":262,"end":271},"obj":"GO:0000237"},{"id":"T2643","span":{"begin":325,"end":336},"obj":"GO:0007126"},{"id":"T2644","span":{"begin":356,"end":361},"obj":"PR:000013672"},{"id":"T2645","span":{"begin":369,"end":373},"obj":"PR:000006536"},{"id":"T2646","span":{"begin":389,"end":416},"obj":"GO:0005714"},{"id":"T2647","span":{"begin":418,"end":422},"obj":"GO:0005714"},{"id":"T2648","span":{"begin":462,"end":468},"obj":"PR:000016672"},{"id":"T2649","span":{"begin":474,"end":482},"obj":"GO:0000238"},{"id":"T2650","span":{"begin":483,"end":496},"obj":"CL:0000017"},{"id":"T2651","span":{"begin":525,"end":530},"obj":"PR:000013672"},{"id":"T2652","span":{"begin":531,"end":539},"obj":"GO:0042571"},{"id":"T2653","span":{"begin":558,"end":562},"obj":"PR:000006536"},{"id":"T2654","span":{"begin":581,"end":603},"obj":"GO:0000725"},{"id":"T2655","span":{"begin":597,"end":611},"obj":"GO:0006302"},{"id":"T2656","span":{"begin":630,"end":645},"obj":"GO:0008278"},{"id":"T2657","span":{"begin":703,"end":711},"obj":"GO:0007129"},{"id":"T2658","span":{"begin":792,"end":799},"obj":"GO:0007126"},{"id":"T2659","span":{"begin":818,"end":823},"obj":"PR:000015706"},{"id":"T2660","span":{"begin":849,"end":853},"obj":"PR:000013858"},{"id":"T2661","span":{"begin":888,"end":892},"obj":"PR:P38126"},{"id":"T2662","span":{"begin":1007,"end":1011},"obj":"PR:000016236"},{"id":"T2663","span":{"begin":1030,"end":1045},"obj":"GO:0043234"},{"id":"T2664","span":{"begin":1148,"end":1156},"obj":"GO:0007129"},{"id":"T2665","span":{"begin":1176,"end":1184},"obj":"GO:0007129"},{"id":"T2631","span":{"begin":4,"end":6},"obj":"GO:0005634"},{"id":"T2632","span":{"begin":9,"end":11},"obj":"GO:0007567"}],"text":"To elucidate the cause of meiotic arrest, we analyzed meiotic chromosomes with a variety of markers that are diagnostic of recombination and synapsis. Recombination in Trip13Gt/Gt spermatocytes appeared to initiate normally as judged by the presence of γH2AX in leptonema (Figure S2A and S2B), which reflects the presence of meiotically induced DSBs [18]. RAD51 and/or DMC1, components of early recombination nodules (ERNs), was also present as abundant foci in Trip13Gt/Gt zygotene spermatocytes (unpublished data; the anti-RAD51 antibody cross-reacts with DMC1), indicating that recombinational repair of DSBs is initiated. The cohesin complex, which is essential for completion and/or maintenance of synaptic associations, appeared to assemble normally as judged by immunolabeling for the meiosis-specific cohesins STAG3 (Figure S2C and S2D) and REC8 (unpublished data). Because yeast PCH2 localizes to telomeres in a Sir3p-dependent manner, we tested for possible telomere defects by immunolabeling for TRF2, a component of a protein complex that plays an essential role in telomere protection [19]. It was localized to telomeres of both fully synapsed and telomerically asynaptic mutant chromosomes (Figure S2E and S2F)."}
2_test
{"project":"2_test","denotations":[{"id":"17696610-11242108-85497900","span":{"begin":351,"end":353},"obj":"11242108"},{"id":"17696610-9476899-85497901","span":{"begin":1099,"end":1101},"obj":"9476899"},{"id":"T44728","span":{"begin":351,"end":353},"obj":"11242108"},{"id":"T98903","span":{"begin":1099,"end":1101},"obj":"9476899"}],"text":"To elucidate the cause of meiotic arrest, we analyzed meiotic chromosomes with a variety of markers that are diagnostic of recombination and synapsis. Recombination in Trip13Gt/Gt spermatocytes appeared to initiate normally as judged by the presence of γH2AX in leptonema (Figure S2A and S2B), which reflects the presence of meiotically induced DSBs [18]. RAD51 and/or DMC1, components of early recombination nodules (ERNs), was also present as abundant foci in Trip13Gt/Gt zygotene spermatocytes (unpublished data; the anti-RAD51 antibody cross-reacts with DMC1), indicating that recombinational repair of DSBs is initiated. The cohesin complex, which is essential for completion and/or maintenance of synaptic associations, appeared to assemble normally as judged by immunolabeling for the meiosis-specific cohesins STAG3 (Figure S2C and S2D) and REC8 (unpublished data). Because yeast PCH2 localizes to telomeres in a Sir3p-dependent manner, we tested for possible telomere defects by immunolabeling for TRF2, a component of a protein complex that plays an essential role in telomere protection [19]. It was localized to telomeres of both fully synapsed and telomerically asynaptic mutant chromosomes (Figure S2E and S2F)."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T2827","span":{"begin":558,"end":562},"obj":"PR_EXT:000006536"},{"id":"T2828","span":{"begin":581,"end":596},"obj":"GO_SO_EXT:sequence_rearrangement_process"},{"id":"T2829","span":{"begin":581,"end":603},"obj":"GO:0000725"},{"id":"T2830","span":{"begin":597,"end":611},"obj":"GO:0006302"},{"id":"T2831","span":{"begin":630,"end":645},"obj":"GO:0008278"},{"id":"T2832","span":{"begin":703,"end":711},"obj":"GO:0007129"},{"id":"T2833","span":{"begin":792,"end":799},"obj":"GO:0007126"},{"id":"T2834","span":{"begin":818,"end":823},"obj":"PR_EXT:000015706"},{"id":"T2835","span":{"begin":849,"end":853},"obj":"PR_EXT:000013858"},{"id":"T2836","span":{"begin":882,"end":887},"obj":"NCBITaxon_EXT:yeast"},{"id":"T2837","span":{"begin":888,"end":892},"obj":"PR_EXT:P38126"},{"id":"T2838","span":{"begin":893,"end":902},"obj":"GO_PATO_EXT:biological_localization_process_or_quality"},{"id":"T2839","span":{"begin":906,"end":915},"obj":"GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation"},{"id":"T2840","span":{"begin":968,"end":976},"obj":"GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation"},{"id":"T2841","span":{"begin":1007,"end":1011},"obj":"PR_EXT:000016236"},{"id":"T2842","span":{"begin":1030,"end":1037},"obj":"CHEBI_PR_EXT:protein"},{"id":"T2843","span":{"begin":1030,"end":1045},"obj":"GO:0043234"},{"id":"T2844","span":{"begin":1078,"end":1086},"obj":"GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation"},{"id":"T2845","span":{"begin":1111,"end":1120},"obj":"GO_PATO_EXT:biological_localization_process_or_quality"},{"id":"T2846","span":{"begin":1124,"end":1133},"obj":"GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation"},{"id":"T2847","span":{"begin":1148,"end":1156},"obj":"GO:0007129"},{"id":"T2848","span":{"begin":1161,"end":1174},"obj":"GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation"},{"id":"T2849","span":{"begin":1176,"end":1184},"obj":"GO:0007129"},{"id":"T2850","span":{"begin":1185,"end":1191},"obj":"SO_EXT:sequence_altered_entity_or_alteration_process"},{"id":"T2851","span":{"begin":1192,"end":1203},"obj":"GO_SO_EXT:chromosome"},{"id":"T2796","span":{"begin":0,"end":1},"obj":"SO_EXT:wild_type_entity_or_quality"},{"id":"T2797","span":{"begin":4,"end":6},"obj":"GO:0005634"},{"id":"T2798","span":{"begin":7,"end":8},"obj":"CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process"},{"id":"T2799","span":{"begin":9,"end":11},"obj":"GO:0007567"},{"id":"T2800","span":{"begin":11,"end":12},"obj":"GO:0007129"},{"id":"T2801","span":{"begin":20,"end":22},"obj":"CL:0000017"},{"id":"T2802","span":{"begin":27,"end":28},"obj":"GO:0030849"},{"id":"T2803","span":{"begin":32,"end":33},"obj":"GO_SO_EXT:chromosome"},{"id":"T2804","span":{"begin":47,"end":48},"obj":"GO:0000239"},{"id":"T2805","span":{"begin":50,"end":52},"obj":"GO_PATO_EXT:biological_localization_process_or_quality"},{"id":"T2806","span":{"begin":54,"end":61},"obj":"GO:0007126"},{"id":"T2807","span":{"begin":62,"end":63},"obj":"GO:0007126"},{"id":"T2808","span":{"begin":63,"end":73},"obj":"GO_SO_EXT:chromosome"},{"id":"T2809","span":{"begin":92,"end":99},"obj":"CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag"},{"id":"T2810","span":{"begin":123,"end":136},"obj":"GO_SO_EXT:sequence_rearrangement_process"},{"id":"T2811","span":{"begin":141,"end":149},"obj":"GO:0007129"},{"id":"T2812","span":{"begin":151,"end":164},"obj":"GO_SO_EXT:sequence_rearrangement_process"},{"id":"T2813","span":{"begin":168,"end":174},"obj":"PR_EXT:000016672"},{"id":"T2814","span":{"begin":180,"end":193},"obj":"CL:0000017"},{"id":"T2815","span":{"begin":262,"end":271},"obj":"GO:0000237"},{"id":"T2816","span":{"begin":325,"end":336},"obj":"GO:0007126"},{"id":"T2817","span":{"begin":356,"end":361},"obj":"PR_EXT:000013672"},{"id":"T2818","span":{"begin":369,"end":373},"obj":"PR_EXT:000006536"},{"id":"T2819","span":{"begin":389,"end":416},"obj":"GO:0005714"},{"id":"T2820","span":{"begin":395,"end":408},"obj":"GO_SO_EXT:sequence_rearrangement_process"},{"id":"T2821","span":{"begin":418,"end":422},"obj":"GO:0005714"},{"id":"T2822","span":{"begin":462,"end":468},"obj":"PR_EXT:000016672"},{"id":"T2823","span":{"begin":474,"end":482},"obj":"GO:0000238"},{"id":"T2824","span":{"begin":483,"end":496},"obj":"CL:0000017"},{"id":"T2825","span":{"begin":525,"end":530},"obj":"PR_EXT:000013672"},{"id":"T2826","span":{"begin":531,"end":539},"obj":"GO:0042571"}],"text":"To elucidate the cause of meiotic arrest, we analyzed meiotic chromosomes with a variety of markers that are diagnostic of recombination and synapsis. Recombination in Trip13Gt/Gt spermatocytes appeared to initiate normally as judged by the presence of γH2AX in leptonema (Figure S2A and S2B), which reflects the presence of meiotically induced DSBs [18]. RAD51 and/or DMC1, components of early recombination nodules (ERNs), was also present as abundant foci in Trip13Gt/Gt zygotene spermatocytes (unpublished data; the anti-RAD51 antibody cross-reacts with DMC1), indicating that recombinational repair of DSBs is initiated. The cohesin complex, which is essential for completion and/or maintenance of synaptic associations, appeared to assemble normally as judged by immunolabeling for the meiosis-specific cohesins STAG3 (Figure S2C and S2D) and REC8 (unpublished data). Because yeast PCH2 localizes to telomeres in a Sir3p-dependent manner, we tested for possible telomere defects by immunolabeling for TRF2, a component of a protein complex that plays an essential role in telomere protection [19]. It was localized to telomeres of both fully synapsed and telomerically asynaptic mutant chromosomes (Figure S2E and S2F)."}