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PMC:1941754 / 17646-19519 JSONTXT

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Id Subject Object Predicate Lexical cue
T11701 0-19 JJ denotes Immunohistochemical
T11702 20-28 NN denotes Analysis
T11703 29-31 IN denotes of
T11704 32-41 NN denotes Pachytene
T11705 55-66 NNS denotes Chromosomes
T11706 42-54 NN denotes Spermatocyte
T11707 66-160 sentence denotes Surface-spread chromosomes were immunolabeled with the indicated antibodies and fluorophores.
T11708 67-74 NN denotes Surface
T11709 75-81 NN denotes spread
T11710 74-75 HYPH denotes -
T11711 82-93 NNS denotes chromosomes
T11712 99-112 VBN denotes immunolabeled
T11713 94-98 VBD denotes were
T11714 113-117 IN denotes with
T11715 118-121 DT denotes the
T11716 132-142 NNS denotes antibodies
T11717 122-131 VBN denotes indicated
T11718 143-146 CC denotes and
T11719 147-159 NNS denotes fluorophores
T11720 159-160 . denotes .
T11721 160-286 sentence denotes As indicated in the upper right of each panel, cells were from wild type (WT, either +/+ or Trip13Gt/+) or Trip13Gt/Gt (Mut).
T11722 161-163 IN denotes As
T11723 164-173 VBN denotes indicated
T11724 214-218 VBD denotes were
T11725 174-176 IN denotes in
T11726 177-180 DT denotes the
T11727 187-192 NN denotes right
T11728 181-186 JJ denotes upper
T11729 193-195 IN denotes of
T11730 196-200 DT denotes each
T11731 201-206 NN denotes panel
T11732 206-208 , denotes ,
T11733 208-213 NNS denotes cells
T11734 219-223 IN denotes from
T11735 224-228 JJ denotes wild
T11736 229-233 NN denotes type
T11737 234-235 -LRB- denotes (
T11738 235-237 NN denotes WT
T11739 237-239 , denotes ,
T11740 239-245 CC denotes either
T11741 248-249 SYM denotes +
T11742 246-247 SYM denotes +
T11743 247-248 HYPH denotes /
T11744 250-252 CC denotes or
T11745 253-261 NN denotes Trip13Gt
T11746 261-262 HYPH denotes /
T11747 262-263 SYM denotes +
T11748 263-264 -RRB- denotes )
T11749 265-267 CC denotes or
T11750 268-276 NN denotes Trip13Gt
T11751 277-279 NN denotes Gt
T11752 276-277 HYPH denotes /
T11753 280-281 -LRB- denotes (
T11754 281-284 NN denotes Mut
T11755 284-285 -RRB- denotes )
T11756 285-286 . denotes .
T11757 286-362 sentence denotes There were no differences seen between heterozygotes and +/+ spermatocytes.
T11758 287-292 EX denotes There
T11759 293-297 VBD denotes were
T11760 298-300 DT denotes no
T11761 301-312 NNS denotes differences
T11762 313-317 VBN denotes seen
T11763 318-325 IN denotes between
T11764 326-339 NNS denotes heterozygotes
T11765 340-343 CC denotes and
T11766 344-345 SYM denotes +
T11767 346-347 SYM denotes +
T11768 345-346 HYPH denotes /
T11769 348-361 NNS denotes spermatocytes
T11770 361-362 . denotes .
T11771 362-413 sentence denotes (A) A mutant pachytene nucleus with full synapsis.
T11772 363-364 -LRB- denotes (
T11773 364-365 LS denotes A
T11774 386-393 NN denotes nucleus
T11775 365-366 -RRB- denotes )
T11776 367-368 DT denotes A
T11777 369-375 NN denotes mutant
T11778 376-385 NN denotes pachytene
T11779 394-398 IN denotes with
T11780 399-403 JJ denotes full
T11781 404-412 NN denotes synapsis
T11782 412-413 . denotes .
T11783 413-457 sentence denotes Areas of SYCP1/SYCP3 colabeling are yellow.
T11784 414-419 NNS denotes Areas
T11785 446-449 VBP denotes are
T11786 420-422 IN denotes of
T11787 423-428 NN denotes SYCP1
T11788 429-434 NN denotes SYCP3
T11789 428-429 HYPH denotes /
T11790 435-445 NN denotes colabeling
T11791 450-456 JJ denotes yellow
T11792 456-457 . denotes .
T11793 457-516 sentence denotes (B–E) Spermatocytes nucleus from 17.5 d postpartum mutant.
T11794 458-459 -LRB- denotes (
T11795 459-460 LS denotes B
T11796 478-485 NN denotes nucleus
T11797 460-461 SYM denotes –
T11798 461-462 LS denotes E
T11799 462-463 -RRB- denotes )
T11800 464-477 NNS denotes Spermatocytes
T11801 486-490 IN denotes from
T11802 491-495 CD denotes 17.5
T11803 496-497 NN denotes d
T11804 498-508 JJ denotes postpartum
T11805 509-515 NN denotes mutant
T11806 515-516 . denotes .
T11807 516-620 sentence denotes Asynapsed chromosomes or regions of chromosomes are indicated by white and yellow arrows, respectively.
T11808 517-526 VBN denotes Asynapsed
T11809 527-538 NNS denotes chromosomes
T11810 569-578 VBN denotes indicated
T11811 539-541 CC denotes or
T11812 542-549 NNS denotes regions
T11813 550-552 IN denotes of
T11814 553-564 NNS denotes chromosomes
T11815 565-568 VBP denotes are
T11816 579-581 IN denotes by
T11817 582-587 JJ denotes white
T11818 599-605 NNS denotes arrows
T11819 588-591 CC denotes and
T11820 592-598 JJ denotes yellow
T11821 605-607 , denotes ,
T11822 607-619 RB denotes respectively
T11823 619-620 . denotes .
T11824 620-767 sentence denotes Unlike the normal distribution in wild-type pachytene spermatocytes (C), BLM foci are present on synapsed pachytene chromosomes in the mutant (D).
T11825 621-627 IN denotes Unlike
T11826 703-706 VBP denotes are
T11827 628-631 DT denotes the
T11828 639-651 NN denotes distribution
T11829 632-638 JJ denotes normal
T11830 652-654 IN denotes in
T11831 655-659 JJ denotes wild
T11832 660-664 NN denotes type
T11833 659-660 HYPH denotes -
T11834 675-688 NNS denotes spermatocytes
T11835 665-674 NN denotes pachytene
T11836 689-690 -LRB- denotes (
T11837 690-691 NN denotes C
T11838 691-692 -RRB- denotes )
T11839 692-694 , denotes ,
T11840 694-697 NN denotes BLM
T11841 698-702 NNS denotes foci
T11842 707-714 JJ denotes present
T11843 715-717 IN denotes on
T11844 718-726 VBN denotes synapsed
T11845 737-748 NNS denotes chromosomes
T11846 727-736 NN denotes pachytene
T11847 749-751 IN denotes in
T11848 752-755 DT denotes the
T11849 756-762 NN denotes mutant
T11850 763-764 -LRB- denotes (
T11851 764-765 NN denotes D
T11852 765-766 -RRB- denotes )
T11853 766-767 . denotes .
T11854 767-932 sentence denotes RAD51 foci, which are abundant earlier in prophase, disappear from autosomes in wild-type pachytene nuclei (E) and the bulk of staining is over the XY body (arrow).
T11855 768-773 NN denotes RAD51
T11856 774-778 NNS denotes foci
T11857 820-829 VBP denotes disappear
T11858 778-780 , denotes ,
T11859 780-785 WDT denotes which
T11860 786-789 VBP denotes are
T11861 790-798 JJ denotes abundant
T11862 799-806 RBR denotes earlier
T11863 807-809 IN denotes in
T11864 810-818 NN denotes prophase
T11865 818-820 , denotes ,
T11866 830-834 IN denotes from
T11867 835-844 NNS denotes autosomes
T11868 845-847 IN denotes in
T11869 848-852 JJ denotes wild
T11870 853-857 NN denotes type
T11871 852-853 HYPH denotes -
T11872 868-874 NNS denotes nuclei
T11873 858-867 NN denotes pachytene
T11874 875-876 -LRB- denotes (
T11875 876-877 NN denotes E
T11876 877-878 -RRB- denotes )
T11877 879-882 CC denotes and
T11878 883-886 DT denotes the
T11879 887-891 NN denotes bulk
T11880 904-906 VBZ denotes is
T11881 892-894 IN denotes of
T11882 895-903 NN denotes staining
T11883 907-911 IN denotes over
T11884 912-915 DT denotes the
T11885 919-923 NN denotes body
T11886 916-918 NN denotes XY
T11887 924-925 -LRB- denotes (
T11888 925-930 NN denotes arrow
T11889 930-931 -RRB- denotes )
T11890 931-932 . denotes .
T11891 932-996 sentence denotes (F) RAD51 persists on the synapsed mutant chromosomes (arrows).
T11892 933-934 -LRB- denotes (
T11893 934-935 LS denotes F
T11894 943-951 VBZ denotes persists
T11895 935-936 -RRB- denotes )
T11896 937-942 NN denotes RAD51
T11897 952-954 IN denotes on
T11898 955-958 DT denotes the
T11899 975-986 NNS denotes chromosomes
T11900 959-967 VBN denotes synapsed
T11901 968-974 NN denotes mutant
T11902 987-988 -LRB- denotes (
T11903 988-994 NNS denotes arrows
T11904 994-995 -RRB- denotes )
T11905 995-996 . denotes .
T11906 996-1057 sentence denotes (G) H2AX phosphorylation is restricted to the XY body in WT.
T11907 997-998 -LRB- denotes (
T11908 998-999 LS denotes G
T11909 1025-1035 VBN denotes restricted
T11910 999-1000 -RRB- denotes )
T11911 1001-1005 NN denotes H2AX
T11912 1006-1021 NN denotes phosphorylation
T11913 1022-1024 VBZ denotes is
T11914 1036-1038 IN denotes to
T11915 1039-1042 DT denotes the
T11916 1046-1050 NN denotes body
T11917 1043-1045 NN denotes XY
T11918 1051-1053 IN denotes in
T11919 1054-1056 NN denotes WT
T11920 1056-1057 . denotes .
T11921 1057-1193 sentence denotes (H) In addition to a large area of γH2AX staining (arrow) over the XY body, there is extensive autosomal H2AX phosphorylation (arrows).
T11922 1058-1059 -LRB- denotes (
T11923 1059-1060 LS denotes H
T11924 1140-1142 VBZ denotes is
T11925 1060-1061 -RRB- denotes )
T11926 1062-1064 IN denotes In
T11927 1065-1073 NN denotes addition
T11928 1074-1076 IN denotes to
T11929 1077-1078 DT denotes a
T11930 1085-1089 NN denotes area
T11931 1079-1084 JJ denotes large
T11932 1090-1092 IN denotes of
T11933 1093-1098 NN denotes γH2AX
T11934 1099-1107 NN denotes staining
T11935 1108-1109 -LRB- denotes (
T11936 1109-1114 NN denotes arrow
T11937 1114-1115 -RRB- denotes )
T11938 1116-1120 IN denotes over
T11939 1121-1124 DT denotes the
T11940 1128-1132 NN denotes body
T11941 1125-1127 NN denotes XY
T11942 1132-1134 , denotes ,
T11943 1134-1139 EX denotes there
T11944 1143-1152 JJ denotes extensive
T11945 1168-1183 NN denotes phosphorylation
T11946 1153-1162 JJ denotes autosomal
T11947 1163-1167 NN denotes H2AX
T11948 1184-1185 -LRB- denotes (
T11949 1185-1191 NNS denotes arrows
T11950 1191-1192 -RRB- denotes )
T11951 1192-1193 . denotes .
T11952 1193-1304 sentence denotes (I, J) Note that in wild-type pachytene spermatocytes, TOPBP1 is present only over the XY body (yellow arrow).
T11953 1194-1195 -LRB- denotes (
T11954 1195-1196 LS denotes I
T11955 1201-1205 VB denotes Note
T11956 1196-1198 , denotes ,
T11957 1198-1199 LS denotes J
T11958 1199-1200 -RRB- denotes )
T11959 1206-1210 IN denotes that
T11960 1256-1258 VBZ denotes is
T11961 1211-1213 IN denotes in
T11962 1214-1218 JJ denotes wild
T11963 1219-1223 NN denotes type
T11964 1218-1219 HYPH denotes -
T11965 1234-1247 NNS denotes spermatocytes
T11966 1224-1233 NN denotes pachytene
T11967 1247-1249 , denotes ,
T11968 1249-1255 NN denotes TOPBP1
T11969 1259-1266 JJ denotes present
T11970 1267-1271 RB denotes only
T11971 1272-1276 IN denotes over
T11972 1277-1280 DT denotes the
T11973 1284-1288 NN denotes body
T11974 1281-1283 NN denotes XY
T11975 1289-1290 -LRB- denotes (
T11976 1297-1302 NN denotes arrow
T11977 1290-1296 JJ denotes yellow
T11978 1302-1303 -RRB- denotes )
T11979 1303-1304 . denotes .
T11980 1304-1465 sentence denotes In the mutant (J), an arrow denotes one area of intensive staining that may be over the sex chromosomes, but many other chromosome cores are positively stained.
T11981 1305-1307 IN denotes In
T11982 1333-1340 VBZ denotes denotes
T11983 1308-1311 DT denotes the
T11984 1312-1318 NN denotes mutant
T11985 1319-1320 -LRB- denotes (
T11986 1320-1321 NN denotes J
T11987 1321-1322 -RRB- denotes )
T11988 1322-1324 , denotes ,
T11989 1324-1326 DT denotes an
T11990 1327-1332 NN denotes arrow
T11991 1341-1344 CD denotes one
T11992 1345-1349 NN denotes area
T11993 1350-1352 IN denotes of
T11994 1353-1362 JJ denotes intensive
T11995 1363-1371 NN denotes staining
T11996 1372-1376 WDT denotes that
T11997 1381-1383 VB denotes be
T11998 1377-1380 MD denotes may
T11999 1384-1388 IN denotes over
T12000 1389-1392 DT denotes the
T12001 1397-1408 NNS denotes chromosomes
T12002 1393-1396 NN denotes sex
T12003 1408-1410 , denotes ,
T12004 1410-1413 CC denotes but
T12005 1414-1418 JJ denotes many
T12006 1436-1441 NNS denotes cores
T12007 1419-1424 JJ denotes other
T12008 1425-1435 NN denotes chromosome
T12009 1457-1464 VBN denotes stained
T12010 1442-1445 VBP denotes are
T12011 1446-1456 RB denotes positively
T12012 1464-1465 . denotes .
T12013 1465-1529 sentence denotes (K, L) RPA persists along synapsed cores in the mutant, not WT.
T12014 1466-1467 -LRB- denotes (
T12015 1467-1468 LS denotes K
T12016 1477-1485 VBZ denotes persists
T12017 1468-1470 , denotes ,
T12018 1470-1471 LS denotes L
T12019 1471-1472 -RRB- denotes )
T12020 1473-1476 NN denotes RPA
T12021 1486-1491 IN denotes along
T12022 1492-1500 VBN denotes synapsed
T12023 1501-1506 NNS denotes cores
T12024 1507-1509 IN denotes in
T12025 1510-1513 DT denotes the
T12026 1514-1520 NN denotes mutant
T12027 1520-1522 , denotes ,
T12028 1522-1525 CC denotes not
T12029 1526-1528 NN denotes WT
T12030 1528-1529 . denotes .
T12031 1529-1582 sentence denotes (M, N) Arrows indicate examples of MLH3 foci on SCs.
T12032 1530-1531 -LRB- denotes (
T12033 1531-1532 LS denotes M
T12034 1544-1552 VBP denotes indicate
T12035 1532-1534 , denotes ,
T12036 1534-1535 LS denotes N
T12037 1535-1536 -RRB- denotes )
T12038 1537-1543 NNS denotes Arrows
T12039 1553-1561 NNS denotes examples
T12040 1562-1564 IN denotes of
T12041 1565-1569 NN denotes MLH3
T12042 1570-1574 NNS denotes foci
T12043 1575-1577 IN denotes on
T12044 1578-1581 NNS denotes SCs
T12045 1581-1582 . denotes .
T12046 1582-1666 sentence denotes (O) In WT late pachytene spermatocytes, RAD51 is present only at background levels.
T12047 1583-1584 -LRB- denotes (
T12048 1584-1585 LS denotes O
T12049 1629-1631 VBZ denotes is
T12050 1585-1586 -RRB- denotes )
T12051 1587-1589 IN denotes In
T12052 1590-1592 NN denotes WT
T12053 1608-1621 NNS denotes spermatocytes
T12054 1593-1597 JJ denotes late
T12055 1598-1607 NN denotes pachytene
T12056 1621-1623 , denotes ,
T12057 1623-1628 NN denotes RAD51
T12058 1632-1639 JJ denotes present
T12059 1640-1644 RB denotes only
T12060 1645-1647 IN denotes at
T12061 1648-1658 NN denotes background
T12062 1659-1665 NNS denotes levels
T12063 1665-1666 . denotes .
T12064 1666-1775 sentence denotes (P) As in (F), extensive RAD51 staining delineates SCs in mutant pachytene nuclei (indicated by white arcs).
T12065 1667-1668 -LRB- denotes (
T12066 1668-1669 LS denotes P
T12067 1707-1717 VBZ denotes delineates
T12068 1669-1670 -RRB- denotes )
T12069 1671-1673 IN denotes As
T12070 1674-1676 IN denotes in
T12071 1677-1678 -LRB- denotes (
T12072 1678-1679 NN denotes F
T12073 1679-1680 -RRB- denotes )
T12074 1680-1682 , denotes ,
T12075 1682-1691 JJ denotes extensive
T12076 1698-1706 NN denotes staining
T12077 1692-1697 NN denotes RAD51
T12078 1718-1721 NNS denotes SCs
T12079 1722-1724 IN denotes in
T12080 1725-1731 NN denotes mutant
T12081 1742-1748 NNS denotes nuclei
T12082 1732-1741 NN denotes pachytene
T12083 1749-1750 -LRB- denotes (
T12084 1750-1759 VBN denotes indicated
T12085 1760-1762 IN denotes by
T12086 1763-1768 JJ denotes white
T12087 1769-1773 NNS denotes arcs
T12088 1773-1774 -RRB- denotes )
T12089 1774-1775 . denotes .
T12090 1775-1873 sentence denotes MLH1 foci colocalize with these tracts (arrows) at the typical 1–2 foci per chromosome as in (M).
T12091 1776-1780 NN denotes MLH1
T12092 1781-1785 NNS denotes foci
T12093 1786-1796 VBP denotes colocalize
T12094 1797-1801 IN denotes with
T12095 1802-1807 DT denotes these
T12096 1808-1814 NNS denotes tracts
T12097 1815-1816 -LRB- denotes (
T12098 1816-1822 NNS denotes arrows
T12099 1822-1823 -RRB- denotes )
T12100 1824-1826 IN denotes at
T12101 1827-1830 DT denotes the
T12102 1843-1847 NNS denotes foci
T12103 1831-1838 JJ denotes typical
T12104 1839-1840 CD denotes 1
T12105 1841-1842 CD denotes 2
T12106 1840-1841 SYM denotes –
T12107 1848-1851 IN denotes per
T12108 1852-1862 NN denotes chromosome
T12109 1863-1865 IN denotes as
T12110 1866-1868 IN denotes in
T12111 1869-1870 -LRB- denotes (
T12112 1870-1871 NN denotes M
T12113 1871-1872 -RRB- denotes )
T12114 1872-1873 . denotes .
R7876 T11701 T11702 amod Immunohistochemical,Analysis
R7877 T11703 T11702 prep of,Analysis
R7878 T11704 T11705 compound Pachytene,Chromosomes
R7879 T11705 T11703 pobj Chromosomes,of
R7880 T11706 T11705 compound Spermatocyte,Chromosomes
R7881 T11708 T11709 compound Surface,spread
R7882 T11709 T11711 compound spread,chromosomes
R7883 T11710 T11709 punct -,spread
R7884 T11711 T11712 nsubjpass chromosomes,immunolabeled
R7885 T11713 T11712 auxpass were,immunolabeled
R7886 T11714 T11712 prep with,immunolabeled
R7887 T11715 T11716 det the,antibodies
R7888 T11716 T11714 pobj antibodies,with
R7889 T11717 T11716 amod indicated,antibodies
R7890 T11718 T11716 cc and,antibodies
R7891 T11719 T11716 conj fluorophores,antibodies
R7892 T11720 T11712 punct .,immunolabeled
R7893 T11722 T11723 mark As,indicated
R7894 T11723 T11724 advcl indicated,were
R7895 T11725 T11723 prep in,indicated
R7896 T11726 T11727 det the,right
R7897 T11727 T11725 pobj right,in
R7898 T11728 T11727 amod upper,right
R7899 T11729 T11727 prep of,right
R7900 T11730 T11731 det each,panel
R7901 T11731 T11729 pobj panel,of
R7902 T11732 T11724 punct ", ",were
R7903 T11733 T11724 nsubj cells,were
R7904 T11734 T11724 prep from,were
R7905 T11735 T11736 amod wild,type
R7906 T11736 T11734 pobj type,from
R7907 T11737 T11736 punct (,type
R7908 T11738 T11736 appos WT,type
R7909 T11739 T11738 punct ", ",WT
R7910 T11740 T11741 preconj either,+
R7911 T11741 T11738 appos +,WT
R7912 T11742 T11741 punct +,+
R7913 T11743 T11741 punct /,+
R7914 T11744 T11741 cc or,+
R7915 T11745 T11741 conj Trip13Gt,+
R7916 T11746 T11745 punct /,Trip13Gt
R7917 T11747 T11745 punct +,Trip13Gt
R7918 T11748 T11736 punct ),type
R7919 T11749 T11736 cc or,type
R7920 T11750 T11751 compound Trip13Gt,Gt
R7921 T11751 T11736 conj Gt,type
R7922 T11752 T11751 punct /,Gt
R7923 T11753 T11751 punct (,Gt
R7924 T11754 T11751 appos Mut,Gt
R7925 T11755 T11724 punct ),were
R7926 T11756 T11724 punct .,were
R7927 T11758 T11759 expl There,were
R7928 T11760 T11761 det no,differences
R7929 T11761 T11759 attr differences,were
R7930 T11762 T11761 acl seen,differences
R7931 T11763 T11762 prep between,seen
R7932 T11764 T11763 pobj heterozygotes,between
R7933 T11765 T11764 cc and,heterozygotes
R7934 T11766 T11767 punct +,+
R7935 T11767 T11769 punct +,spermatocytes
R7936 T11768 T11767 punct /,+
R7937 T11769 T11764 conj spermatocytes,heterozygotes
R7938 T11770 T11759 punct .,were
R7939 T11772 T11773 punct (,A
R7940 T11773 T11774 meta A,nucleus
R7941 T11775 T11773 punct ),A
R7942 T11776 T11774 det A,nucleus
R7943 T11777 T11774 compound mutant,nucleus
R7944 T11778 T11774 compound pachytene,nucleus
R7945 T11779 T11774 prep with,nucleus
R7946 T11780 T11781 amod full,synapsis
R7947 T11781 T11779 pobj synapsis,with
R7948 T11782 T11774 punct .,nucleus
R7949 T11784 T11785 nsubj Areas,are
R7950 T11786 T11784 prep of,Areas
R7951 T11787 T11788 compound SYCP1,SYCP3
R7952 T11788 T11790 compound SYCP3,colabeling
R7953 T11789 T11788 punct /,SYCP3
R7954 T11790 T11786 pobj colabeling,of
R7955 T11791 T11785 acomp yellow,are
R7956 T11792 T11785 punct .,are
R7957 T11794 T11795 punct (,B
R7958 T11795 T11796 meta B,nucleus
R7959 T11797 T11795 punct –,B
R7960 T11798 T11795 dep E,B
R7961 T11799 T11795 punct ),B
R7962 T11800 T11796 compound Spermatocytes,nucleus
R7963 T11801 T11796 prep from,nucleus
R7964 T11802 T11803 nummod 17.5,d
R7965 T11803 T11804 npadvmod d,postpartum
R7966 T11804 T11805 amod postpartum,mutant
R7967 T11805 T11801 pobj mutant,from
R7968 T11806 T11796 punct .,nucleus
R7969 T11808 T11809 amod Asynapsed,chromosomes
R7970 T11809 T11810 nsubjpass chromosomes,indicated
R7971 T11811 T11809 cc or,chromosomes
R7972 T11812 T11809 conj regions,chromosomes
R7973 T11813 T11812 prep of,regions
R7974 T11814 T11813 pobj chromosomes,of
R7975 T11815 T11810 auxpass are,indicated
R7976 T11816 T11810 agent by,indicated
R7977 T11817 T11818 amod white,arrows
R7978 T11818 T11816 pobj arrows,by
R7979 T11819 T11817 cc and,white
R7980 T11820 T11817 conj yellow,white
R7981 T11821 T11810 punct ", ",indicated
R7982 T11822 T11810 advmod respectively,indicated
R7983 T11823 T11810 punct .,indicated
R7984 T11825 T11826 prep Unlike,are
R7985 T11827 T11828 det the,distribution
R7986 T11828 T11825 pobj distribution,Unlike
R7987 T11829 T11828 amod normal,distribution
R7988 T11830 T11828 prep in,distribution
R7989 T11831 T11832 amod wild,type
R7990 T11832 T11834 compound type,spermatocytes
R7991 T11833 T11832 punct -,type
R7992 T11834 T11830 pobj spermatocytes,in
R7993 T11835 T11834 compound pachytene,spermatocytes
R7994 T11836 T11837 punct (,C
R7995 T11837 T11828 parataxis C,distribution
R7996 T11838 T11837 punct ),C
R7997 T11839 T11826 punct ", ",are
R7998 T11840 T11841 compound BLM,foci
R7999 T11841 T11826 nsubj foci,are
R8000 T11842 T11826 acomp present,are
R8001 T11843 T11826 prep on,are
R8002 T11844 T11845 amod synapsed,chromosomes
R8003 T11845 T11843 pobj chromosomes,on
R8004 T11846 T11845 compound pachytene,chromosomes
R8005 T11847 T11845 prep in,chromosomes
R8006 T11848 T11849 det the,mutant
R8007 T11849 T11847 pobj mutant,in
R8008 T11850 T11851 punct (,D
R8009 T11851 T11826 parataxis D,are
R8010 T11852 T11851 punct ),D
R8011 T11853 T11826 punct .,are
R8012 T11855 T11856 compound RAD51,foci
R8013 T11856 T11857 nsubj foci,disappear
R8014 T11858 T11856 punct ", ",foci
R8015 T11859 T11860 dep which,are
R8016 T11860 T11856 relcl are,foci
R8017 T11861 T11860 acomp abundant,are
R8018 T11862 T11863 advmod earlier,in
R8019 T11863 T11860 prep in,are
R8020 T11864 T11863 pobj prophase,in
R8021 T11865 T11857 punct ", ",disappear
R8022 T11866 T11857 prep from,disappear
R8023 T11867 T11866 pobj autosomes,from
R8024 T11868 T11857 prep in,disappear
R8025 T11869 T11870 amod wild,type
R8026 T11870 T11872 compound type,nuclei
R8027 T11871 T11870 punct -,type
R8028 T11872 T11868 pobj nuclei,in
R8029 T11873 T11872 compound pachytene,nuclei
R8030 T11874 T11875 punct (,E
R8031 T11875 T11857 parataxis E,disappear
R8032 T11876 T11875 punct ),E
R8033 T11877 T11857 cc and,disappear
R8034 T11878 T11879 det the,bulk
R8035 T11879 T11880 nsubj bulk,is
R8036 T11880 T11857 conj is,disappear
R8037 T11881 T11879 prep of,bulk
R8038 T11882 T11881 pobj staining,of
R8039 T11883 T11880 prep over,is
R8040 T11884 T11885 det the,body
R8041 T11885 T11883 pobj body,over
R8042 T11886 T11885 compound XY,body
R8043 T11887 T11888 punct (,arrow
R8044 T11888 T11880 parataxis arrow,is
R8045 T11889 T11888 punct ),arrow
R8046 T11890 T11880 punct .,is
R8047 T11892 T11893 punct (,F
R8048 T11893 T11894 meta F,persists
R8049 T11895 T11893 punct ),F
R8050 T11896 T11894 nsubj RAD51,persists
R8051 T11897 T11894 prep on,persists
R8052 T11898 T11899 det the,chromosomes
R8053 T11899 T11897 pobj chromosomes,on
R8054 T11900 T11899 amod synapsed,chromosomes
R8055 T11901 T11899 compound mutant,chromosomes
R8056 T11902 T11903 punct (,arrows
R8057 T11903 T11894 parataxis arrows,persists
R8058 T11904 T11903 punct ),arrows
R8059 T11905 T11894 punct .,persists
R8060 T11907 T11908 punct (,G
R8061 T11908 T11909 meta G,restricted
R8062 T11910 T11908 punct ),G
R8063 T11911 T11912 compound H2AX,phosphorylation
R8064 T11912 T11909 nsubjpass phosphorylation,restricted
R8065 T11913 T11909 auxpass is,restricted
R8066 T11914 T11909 prep to,restricted
R8067 T11915 T11916 det the,body
R8068 T11916 T11914 pobj body,to
R8069 T11917 T11916 compound XY,body
R8070 T11918 T11909 prep in,restricted
R8071 T11919 T11918 pobj WT,in
R8072 T11920 T11909 punct .,restricted
R8073 T11922 T11923 punct (,H
R8074 T11923 T11924 meta H,is
R8075 T11925 T11923 punct ),H
R8076 T11926 T11924 prep In,is
R8077 T11927 T11926 pobj addition,In
R8078 T11928 T11927 prep to,addition
R8079 T11929 T11930 det a,area
R8080 T11930 T11928 pobj area,to
R8081 T11931 T11930 amod large,area
R8082 T11932 T11930 prep of,area
R8083 T11933 T11934 compound γH2AX,staining
R8084 T11934 T11932 pobj staining,of
R8085 T11935 T11936 punct (,arrow
R8086 T11936 T11930 parataxis arrow,area
R8087 T11937 T11936 punct ),arrow
R8088 T11938 T11930 prep over,area
R8089 T11939 T11940 det the,body
R8090 T11940 T11938 pobj body,over
R8091 T11941 T11940 compound XY,body
R8092 T11942 T11924 punct ", ",is
R8093 T11943 T11924 expl there,is
R8094 T11944 T11945 amod extensive,phosphorylation
R8095 T11945 T11924 attr phosphorylation,is
R8096 T11946 T11945 amod autosomal,phosphorylation
R8097 T11947 T11945 compound H2AX,phosphorylation
R8098 T11948 T11949 punct (,arrows
R8099 T11949 T11924 parataxis arrows,is
R8100 T11950 T11949 punct ),arrows
R8101 T11951 T11924 punct .,is
R8102 T11953 T11954 punct (,I
R8103 T11954 T11955 meta I,Note
R8104 T11956 T11954 punct ", ",I
R8105 T11957 T11954 dep J,I
R8106 T11958 T11954 punct ),I
R8107 T11959 T11960 mark that,is
R8108 T11960 T11955 ccomp is,Note
R8109 T11961 T11960 prep in,is
R8110 T11962 T11963 amod wild,type
R8111 T11963 T11965 compound type,spermatocytes
R8112 T11964 T11963 punct -,type
R8113 T11965 T11961 pobj spermatocytes,in
R8114 T11966 T11965 compound pachytene,spermatocytes
R8115 T11967 T11960 punct ", ",is
R8116 T11968 T11960 nsubj TOPBP1,is
R8117 T11969 T11960 acomp present,is
R8118 T11970 T11971 advmod only,over
R8119 T11971 T11960 prep over,is
R8120 T11972 T11973 det the,body
R8121 T11973 T11971 pobj body,over
R8122 T11974 T11973 compound XY,body
R8123 T11975 T11976 punct (,arrow
R8124 T11976 T11960 parataxis arrow,is
R8125 T11977 T11976 amod yellow,arrow
R8126 T11978 T11976 punct ),arrow
R8127 T11979 T11955 punct .,Note
R8128 T11981 T11982 prep In,denotes
R8129 T11983 T11984 det the,mutant
R8130 T11984 T11981 pobj mutant,In
R8131 T11985 T11986 punct (,J
R8132 T11986 T11984 parataxis J,mutant
R8133 T11987 T11986 punct ),J
R8134 T11988 T11982 punct ", ",denotes
R8135 T11989 T11990 det an,arrow
R8136 T11990 T11982 nsubj arrow,denotes
R8137 T11991 T11992 nummod one,area
R8138 T11992 T11982 dobj area,denotes
R8139 T11993 T11992 prep of,area
R8140 T11994 T11995 amod intensive,staining
R8141 T11995 T11993 pobj staining,of
R8142 T11996 T11997 dep that,be
R8143 T11997 T11992 relcl be,area
R8144 T11998 T11997 aux may,be
R8145 T11999 T11997 prep over,be
R8146 T12000 T12001 det the,chromosomes
R8147 T12001 T11999 pobj chromosomes,over
R8148 T12002 T12001 compound sex,chromosomes
R8149 T12003 T11982 punct ", ",denotes
R8150 T12004 T11982 cc but,denotes
R8151 T12005 T12006 amod many,cores
R8152 T12006 T12009 nsubjpass cores,stained
R8153 T12007 T12006 amod other,cores
R8154 T12008 T12006 compound chromosome,cores
R8155 T12009 T11982 conj stained,denotes
R8156 T12010 T12009 auxpass are,stained
R8157 T12011 T12009 advmod positively,stained
R8158 T12012 T12009 punct .,stained
R8159 T12014 T12015 punct (,K
R8160 T12015 T12016 meta K,persists
R8161 T12017 T12015 punct ", ",K
R8162 T12018 T12015 dep L,K
R8163 T12019 T12015 punct ),K
R8164 T12020 T12016 nsubj RPA,persists
R8165 T12021 T12016 prep along,persists
R8166 T12022 T12023 amod synapsed,cores
R8167 T12023 T12021 pobj cores,along
R8168 T12024 T12016 prep in,persists
R8169 T12025 T12026 det the,mutant
R8170 T12026 T12024 pobj mutant,in
R8171 T12027 T12026 punct ", ",mutant
R8172 T12028 T12026 cc not,mutant
R8173 T12029 T12026 conj WT,mutant
R8174 T12030 T12016 punct .,persists
R8175 T12032 T12033 punct (,M
R8176 T12033 T12034 meta M,indicate
R8177 T12035 T12033 punct ", ",M
R8178 T12036 T12033 dep N,M
R8179 T12037 T12033 punct ),M
R8180 T12038 T12034 nsubj Arrows,indicate
R8181 T12039 T12034 dobj examples,indicate
R8182 T12040 T12039 prep of,examples
R8183 T12041 T12042 compound MLH3,foci
R8184 T12042 T12040 pobj foci,of
R8185 T12043 T12042 prep on,foci
R8186 T12044 T12043 pobj SCs,on
R8187 T12045 T12034 punct .,indicate
R8188 T12047 T12048 punct (,O
R8189 T12048 T12049 meta O,is
R8190 T12050 T12048 punct ),O
R8191 T12051 T12049 prep In,is
R8192 T12052 T12053 nmod WT,spermatocytes
R8193 T12053 T12051 pobj spermatocytes,In
R8194 T12054 T12053 amod late,spermatocytes
R8195 T12055 T12053 compound pachytene,spermatocytes
R8196 T12056 T12049 punct ", ",is
R8197 T12057 T12049 nsubj RAD51,is
R8198 T12058 T12049 acomp present,is
R8199 T12059 T12060 advmod only,at
R8200 T12060 T12049 prep at,is
R8201 T12061 T12062 compound background,levels
R8202 T12062 T12060 pobj levels,at
R8203 T12063 T12049 punct .,is
R8204 T12065 T12066 punct (,P
R8205 T12066 T12067 meta P,delineates
R8206 T12068 T12066 punct ),P
R8207 T12069 T12067 prep As,delineates
R8208 T12070 T12069 prep in,As
R8209 T12071 T12072 punct (,F
R8210 T12072 T12070 pobj F,in
R8211 T12073 T12072 punct ),F
R8212 T12074 T12067 punct ", ",delineates
R8213 T12075 T12076 amod extensive,staining
R8214 T12076 T12067 nsubj staining,delineates
R8215 T12077 T12076 compound RAD51,staining
R8216 T12078 T12067 dobj SCs,delineates
R8217 T12079 T12078 prep in,SCs
R8218 T12080 T12081 compound mutant,nuclei
R8219 T12081 T12079 pobj nuclei,in
R8220 T12082 T12081 compound pachytene,nuclei
R8221 T12083 T12078 punct (,SCs
R8222 T12084 T12078 acl indicated,SCs
R8223 T12085 T12084 agent by,indicated
R8224 T12086 T12087 amod white,arcs
R8225 T12087 T12085 pobj arcs,by
R8226 T12088 T12067 punct ),delineates
R8227 T12089 T12067 punct .,delineates
R8228 T12091 T12092 compound MLH1,foci
R8229 T12092 T12093 nsubj foci,colocalize
R8230 T12094 T12093 prep with,colocalize
R8231 T12095 T12096 det these,tracts
R8232 T12096 T12094 pobj tracts,with
R8233 T12097 T12098 punct (,arrows
R8234 T12098 T12096 parataxis arrows,tracts
R8235 T12099 T12098 punct ),arrows
R8236 T12100 T12093 prep at,colocalize
R8237 T12101 T12102 det the,foci
R8238 T12102 T12100 pobj foci,at
R8239 T12103 T12102 amod typical,foci
R8240 T12104 T12105 quantmod 1,2
R8241 T12105 T12102 nummod 2,foci
R8242 T12106 T12105 punct –,2
R8243 T12107 T12102 prep per,foci
R8244 T12108 T12107 pobj chromosome,per
R8245 T12109 T12093 prep as,colocalize
R8246 T12110 T12109 prep in,as
R8247 T12111 T12112 punct (,M
R8248 T12112 T12110 pobj M,in
R8249 T12113 T12112 punct ),M
R8250 T12114 T12093 punct .,colocalize

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11576 429-434 PR:000015865 denotes SYCP3
T11577 464-477 CL:0000017 denotes Spermatocytes
T11578 478-485 GO:0005634 denotes nucleus
T11579 502-508 GO:0007567 denotes partum
T11580 518-526 GO:0007129 denotes synapsed
T11581 665-674 GO:0000239 denotes pachytene
T11582 675-688 CL:0000017 denotes spermatocytes
T11583 694-697 PR:000004759 denotes BLM
T11584 718-726 GO:0007129 denotes synapsed
T11585 727-736 GO:0000239 denotes pachytene
T11586 768-773 PR:000013672 denotes RAD51
T11587 810-818 GO:0051324 denotes prophase
T11588 835-844 GO:0030849 denotes autosomes
T11589 858-867 GO:0000239 denotes pachytene
T11590 868-874 GO:0005634 denotes nuclei
T11591 916-923 GO:0001741 denotes XY body
T11592 937-942 PR:000013672 denotes RAD51
T11593 959-967 GO:0007129 denotes synapsed
T11594 1001-1005 PR:000008418 denotes H2AX
T11595 1043-1050 GO:0001741 denotes XY body
T11596 1125-1132 GO:0001741 denotes XY body
T11597 1153-1162 GO:0030849 denotes autosomal
T11598 1163-1167 PR:000008418 denotes H2AX
T11599 1224-1233 GO:0000239 denotes pachytene
T11600 1234-1247 CL:0000017 denotes spermatocytes
T11601 1249-1255 PR:000016548 denotes TOPBP1
T11602 1281-1288 GO:0001741 denotes XY body
T11603 1393-1408 GO:0000803 denotes sex chromosomes
T11604 1473-1476 GO:0005662 denotes RPA
T11605 1492-1500 GO:0007129 denotes synapsed
T11606 1565-1569 PR:000010443 denotes MLH3
T11607 1578-1581 GO:0000795 denotes SCs
T11608 1598-1607 GO:0000239 denotes pachytene
T11609 1608-1621 CL:0000017 denotes spermatocytes
T11610 1623-1628 PR:000013672 denotes RAD51
T11611 1692-1697 PR:000013672 denotes RAD51
T11612 1718-1721 GO:0000795 denotes SCs
T11613 1732-1741 GO:0000239 denotes pachytene
T11614 1742-1748 GO:0005634 denotes nuclei
T11615 1776-1780 PR:000010442 denotes MLH1
T11565 32-41 GO:0000239 denotes Pachytene
T11566 42-54 CL:0000017 denotes Spermatocyte
T11567 132-142 GO:0042571 denotes antibodies
T11568 147-159 CHEBI:51217 denotes fluorophores
T11569 253-259 PR:000016672 denotes Trip13
T11570 268-274 PR:000016672 denotes Trip13
T11571 348-361 CL:0000017 denotes spermatocytes
T11572 376-385 GO:0000239 denotes pachytene
T11573 386-393 GO:0005634 denotes nucleus
T11574 404-412 GO:0007129 denotes synapsis
T11575 423-428 PR:000015862 denotes SYCP1

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11616 32-41 GO:0000239 denotes Pachytene
T11617 42-54 CL:0000017 denotes Spermatocyte
T11618 55-66 GO_SO_EXT:chromosome denotes Chromosomes
T11619 82-93 GO_SO_EXT:chromosome denotes chromosomes
T11620 132-142 GO:0042571 denotes antibodies
T11621 147-159 CHEBI_EXT:51217 denotes fluorophores
T11622 208-213 CL_GO_EXT:cell denotes cells
T11623 224-233 SO_EXT:wild_type_entity_or_quality denotes wild type
T11624 235-237 SO_EXT:wild_type_entity_or_quality denotes WT
T11625 246-247 SO_EXT:normal_or_wild_type_or_present denotes +
T11626 248-249 SO_EXT:normal_or_wild_type_or_present denotes +
T11627 253-259 PR_EXT:000016672 denotes Trip13
T11628 262-263 SO_EXT:normal_or_wild_type_or_present denotes +
T11629 268-274 PR_EXT:000016672 denotes Trip13
T11630 344-345 SO_EXT:normal_or_wild_type_or_present denotes +
T11631 346-347 SO_EXT:normal_or_wild_type_or_present denotes +
T11632 348-361 CL:0000017 denotes spermatocytes
T11633 369-375 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11634 376-385 GO:0000239 denotes pachytene
T11635 386-393 GO:0005634 denotes nucleus
T11636 404-412 GO:0007129 denotes synapsis
T11637 423-428 PR_EXT:000015862 denotes SYCP1
T11638 429-434 PR_EXT:000015865 denotes SYCP3
T11639 437-445 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T11640 464-477 CL:0000017 denotes Spermatocytes
T11641 478-485 GO:0005634 denotes nucleus
T11642 502-508 GO:0007567 denotes partum
T11643 509-515 SO_EXT:sequence_altered_entity denotes mutant
T11644 518-526 GO:0007129 denotes synapsed
T11645 527-538 GO_SO_EXT:chromosome denotes chromosomes
T11646 542-564 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes regions of chromosomes
T11647 655-664 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11648 665-674 GO:0000239 denotes pachytene
T11649 675-688 CL:0000017 denotes spermatocytes
T11650 694-697 PR_EXT:000004759 denotes BLM
T11651 718-726 GO:0007129 denotes synapsed
T11652 727-736 GO:0000239 denotes pachytene
T11653 737-748 GO_SO_EXT:chromosome denotes chromosomes
T11654 756-762 SO_EXT:sequence_altered_entity denotes mutant
T11655 768-773 PR_EXT:000013672 denotes RAD51
T11656 810-818 GO:0051324 denotes prophase
T11657 835-844 GO:0030849 denotes autosomes
T11658 848-857 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11659 858-867 GO:0000239 denotes pachytene
T11660 868-874 GO:0005634 denotes nuclei
T11661 916-923 GO:0001741 denotes XY body
T11662 937-942 PR_EXT:000013672 denotes RAD51
T11663 959-967 GO:0007129 denotes synapsed
T11664 968-974 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11665 975-986 GO_SO_EXT:chromosome denotes chromosomes
T11666 1001-1005 PR_EXT:000008418 denotes H2AX
T11667 1006-1021 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T11668 1043-1050 GO:0001741 denotes XY body
T11669 1054-1056 SO_EXT:wild_type_entity_or_quality denotes WT
T11670 1125-1132 GO:0001741 denotes XY body
T11671 1153-1162 GO:0030849 denotes autosomal
T11672 1163-1167 PR_EXT:000008418 denotes H2AX
T11673 1168-1183 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T11674 1214-1223 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11675 1224-1233 GO:0000239 denotes pachytene
T11676 1234-1247 CL:0000017 denotes spermatocytes
T11677 1249-1255 PR_EXT:000016548 denotes TOPBP1
T11678 1281-1288 GO:0001741 denotes XY body
T11679 1312-1318 SO_EXT:sequence_altered_entity denotes mutant
T11680 1393-1408 GO:0000803 denotes sex chromosomes
T11681 1397-1408 GO_SO_EXT:chromosome denotes chromosomes
T11682 1425-1435 GO_SO_EXT:chromosome denotes chromosome
T11683 1473-1476 GO:0005662 denotes RPA
T11684 1492-1500 GO:0007129 denotes synapsed
T11685 1514-1520 SO_EXT:sequence_altered_entity denotes mutant
T11686 1526-1528 SO_EXT:wild_type_entity_or_quality denotes WT
T11687 1565-1569 PR_EXT:000010443 denotes MLH3
T11688 1578-1581 GO:0000795 denotes SCs
T11689 1590-1592 SO_EXT:wild_type_entity_or_quality denotes WT
T11690 1598-1607 GO:0000239 denotes pachytene
T11691 1608-1621 CL:0000017 denotes spermatocytes
T11692 1623-1628 PR_EXT:000013672 denotes RAD51
T11693 1692-1697 PR_EXT:000013672 denotes RAD51
T11694 1718-1721 GO:0000795 denotes SCs
T11695 1725-1731 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11696 1732-1741 GO:0000239 denotes pachytene
T11697 1742-1748 GO:0005634 denotes nuclei
T11698 1776-1780 PR_EXT:000010442 denotes MLH1
T11699 1788-1796 GO_PATO_EXT:biological_localization_process_or_quality denotes localize
T11700 1852-1862 GO_SO_EXT:chromosome denotes chromosome