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PMC:1941754 / 17636-19519 JSONTXT

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Id Subject Object Predicate Lexical cue
T11701 10-29 JJ denotes Immunohistochemical
T11702 30-38 NN denotes Analysis
T11703 39-41 IN denotes of
T11704 42-51 NN denotes Pachytene
T11705 65-76 NNS denotes Chromosomes
T11706 52-64 NN denotes Spermatocyte
T11707 76-170 sentence denotes Surface-spread chromosomes were immunolabeled with the indicated antibodies and fluorophores.
T11708 77-84 NN denotes Surface
T11709 85-91 NN denotes spread
T11710 84-85 HYPH denotes -
T11711 92-103 NNS denotes chromosomes
T11712 109-122 VBN denotes immunolabeled
T11713 104-108 VBD denotes were
T11714 123-127 IN denotes with
T11715 128-131 DT denotes the
T11716 142-152 NNS denotes antibodies
T11717 132-141 VBN denotes indicated
T11718 153-156 CC denotes and
T11719 157-169 NNS denotes fluorophores
T11720 169-170 . denotes .
T11721 170-296 sentence denotes As indicated in the upper right of each panel, cells were from wild type (WT, either +/+ or Trip13Gt/+) or Trip13Gt/Gt (Mut).
T11722 171-173 IN denotes As
T11723 174-183 VBN denotes indicated
T11724 224-228 VBD denotes were
T11725 184-186 IN denotes in
T11726 187-190 DT denotes the
T11727 197-202 NN denotes right
T11728 191-196 JJ denotes upper
T11729 203-205 IN denotes of
T11730 206-210 DT denotes each
T11731 211-216 NN denotes panel
T11732 216-218 , denotes ,
T11733 218-223 NNS denotes cells
T11734 229-233 IN denotes from
T11735 234-238 JJ denotes wild
T11736 239-243 NN denotes type
T11737 244-245 -LRB- denotes (
T11738 245-247 NN denotes WT
T11739 247-249 , denotes ,
T11740 249-255 CC denotes either
T11741 258-259 SYM denotes +
T11742 256-257 SYM denotes +
T11743 257-258 HYPH denotes /
T11744 260-262 CC denotes or
T11745 263-271 NN denotes Trip13Gt
T11746 271-272 HYPH denotes /
T11747 272-273 SYM denotes +
T11748 273-274 -RRB- denotes )
T11749 275-277 CC denotes or
T11750 278-286 NN denotes Trip13Gt
T11751 287-289 NN denotes Gt
T11752 286-287 HYPH denotes /
T11753 290-291 -LRB- denotes (
T11754 291-294 NN denotes Mut
T11755 294-295 -RRB- denotes )
T11756 295-296 . denotes .
T11757 296-372 sentence denotes There were no differences seen between heterozygotes and +/+ spermatocytes.
T11758 297-302 EX denotes There
T11759 303-307 VBD denotes were
T11760 308-310 DT denotes no
T11761 311-322 NNS denotes differences
T11762 323-327 VBN denotes seen
T11763 328-335 IN denotes between
T11764 336-349 NNS denotes heterozygotes
T11765 350-353 CC denotes and
T11766 354-355 SYM denotes +
T11767 356-357 SYM denotes +
T11768 355-356 HYPH denotes /
T11769 358-371 NNS denotes spermatocytes
T11770 371-372 . denotes .
T11771 372-423 sentence denotes (A) A mutant pachytene nucleus with full synapsis.
T11772 373-374 -LRB- denotes (
T11773 374-375 LS denotes A
T11774 396-403 NN denotes nucleus
T11775 375-376 -RRB- denotes )
T11776 377-378 DT denotes A
T11777 379-385 NN denotes mutant
T11778 386-395 NN denotes pachytene
T11779 404-408 IN denotes with
T11780 409-413 JJ denotes full
T11781 414-422 NN denotes synapsis
T11782 422-423 . denotes .
T11783 423-467 sentence denotes Areas of SYCP1/SYCP3 colabeling are yellow.
T11784 424-429 NNS denotes Areas
T11785 456-459 VBP denotes are
T11786 430-432 IN denotes of
T11787 433-438 NN denotes SYCP1
T11788 439-444 NN denotes SYCP3
T11789 438-439 HYPH denotes /
T11790 445-455 NN denotes colabeling
T11791 460-466 JJ denotes yellow
T11792 466-467 . denotes .
T11793 467-526 sentence denotes (B–E) Spermatocytes nucleus from 17.5 d postpartum mutant.
T11794 468-469 -LRB- denotes (
T11795 469-470 LS denotes B
T11796 488-495 NN denotes nucleus
T11797 470-471 SYM denotes –
T11798 471-472 LS denotes E
T11799 472-473 -RRB- denotes )
T11800 474-487 NNS denotes Spermatocytes
T11801 496-500 IN denotes from
T11802 501-505 CD denotes 17.5
T11803 506-507 NN denotes d
T11804 508-518 JJ denotes postpartum
T11805 519-525 NN denotes mutant
T11806 525-526 . denotes .
T11807 526-630 sentence denotes Asynapsed chromosomes or regions of chromosomes are indicated by white and yellow arrows, respectively.
T11808 527-536 VBN denotes Asynapsed
T11809 537-548 NNS denotes chromosomes
T11810 579-588 VBN denotes indicated
T11811 549-551 CC denotes or
T11812 552-559 NNS denotes regions
T11813 560-562 IN denotes of
T11814 563-574 NNS denotes chromosomes
T11815 575-578 VBP denotes are
T11816 589-591 IN denotes by
T11817 592-597 JJ denotes white
T11818 609-615 NNS denotes arrows
T11819 598-601 CC denotes and
T11820 602-608 JJ denotes yellow
T11821 615-617 , denotes ,
T11822 617-629 RB denotes respectively
T11823 629-630 . denotes .
T11824 630-777 sentence denotes Unlike the normal distribution in wild-type pachytene spermatocytes (C), BLM foci are present on synapsed pachytene chromosomes in the mutant (D).
T11825 631-637 IN denotes Unlike
T11826 713-716 VBP denotes are
T11827 638-641 DT denotes the
T11828 649-661 NN denotes distribution
T11829 642-648 JJ denotes normal
T11830 662-664 IN denotes in
T11831 665-669 JJ denotes wild
T11832 670-674 NN denotes type
T11833 669-670 HYPH denotes -
T11834 685-698 NNS denotes spermatocytes
T11835 675-684 NN denotes pachytene
T11836 699-700 -LRB- denotes (
T11837 700-701 NN denotes C
T11838 701-702 -RRB- denotes )
T11839 702-704 , denotes ,
T11840 704-707 NN denotes BLM
T11841 708-712 NNS denotes foci
T11842 717-724 JJ denotes present
T11843 725-727 IN denotes on
T11844 728-736 VBN denotes synapsed
T11845 747-758 NNS denotes chromosomes
T11846 737-746 NN denotes pachytene
T11847 759-761 IN denotes in
T11848 762-765 DT denotes the
T11849 766-772 NN denotes mutant
T11850 773-774 -LRB- denotes (
T11851 774-775 NN denotes D
T11852 775-776 -RRB- denotes )
T11853 776-777 . denotes .
T11854 777-942 sentence denotes RAD51 foci, which are abundant earlier in prophase, disappear from autosomes in wild-type pachytene nuclei (E) and the bulk of staining is over the XY body (arrow).
T11855 778-783 NN denotes RAD51
T11856 784-788 NNS denotes foci
T11857 830-839 VBP denotes disappear
T11858 788-790 , denotes ,
T11859 790-795 WDT denotes which
T11860 796-799 VBP denotes are
T11861 800-808 JJ denotes abundant
T11862 809-816 RBR denotes earlier
T11863 817-819 IN denotes in
T11864 820-828 NN denotes prophase
T11865 828-830 , denotes ,
T11866 840-844 IN denotes from
T11867 845-854 NNS denotes autosomes
T11868 855-857 IN denotes in
T11869 858-862 JJ denotes wild
T11870 863-867 NN denotes type
T11871 862-863 HYPH denotes -
T11872 878-884 NNS denotes nuclei
T11873 868-877 NN denotes pachytene
T11874 885-886 -LRB- denotes (
T11875 886-887 NN denotes E
T11876 887-888 -RRB- denotes )
T11877 889-892 CC denotes and
T11878 893-896 DT denotes the
T11879 897-901 NN denotes bulk
T11880 914-916 VBZ denotes is
T11881 902-904 IN denotes of
T11882 905-913 NN denotes staining
T11883 917-921 IN denotes over
T11884 922-925 DT denotes the
T11885 929-933 NN denotes body
T11886 926-928 NN denotes XY
T11887 934-935 -LRB- denotes (
T11888 935-940 NN denotes arrow
T11889 940-941 -RRB- denotes )
T11890 941-942 . denotes .
T11891 942-1006 sentence denotes (F) RAD51 persists on the synapsed mutant chromosomes (arrows).
T11892 943-944 -LRB- denotes (
T11893 944-945 LS denotes F
T11894 953-961 VBZ denotes persists
T11895 945-946 -RRB- denotes )
T11896 947-952 NN denotes RAD51
T11897 962-964 IN denotes on
T11898 965-968 DT denotes the
T11899 985-996 NNS denotes chromosomes
T11900 969-977 VBN denotes synapsed
T11901 978-984 NN denotes mutant
T11902 997-998 -LRB- denotes (
T11903 998-1004 NNS denotes arrows
T11904 1004-1005 -RRB- denotes )
T11905 1005-1006 . denotes .
T11906 1006-1067 sentence denotes (G) H2AX phosphorylation is restricted to the XY body in WT.
T11907 1007-1008 -LRB- denotes (
T11908 1008-1009 LS denotes G
T11909 1035-1045 VBN denotes restricted
T11910 1009-1010 -RRB- denotes )
T11911 1011-1015 NN denotes H2AX
T11912 1016-1031 NN denotes phosphorylation
T11913 1032-1034 VBZ denotes is
T11914 1046-1048 IN denotes to
T11915 1049-1052 DT denotes the
T11916 1056-1060 NN denotes body
T11917 1053-1055 NN denotes XY
T11918 1061-1063 IN denotes in
T11919 1064-1066 NN denotes WT
T11920 1066-1067 . denotes .
T11921 1067-1203 sentence denotes (H) In addition to a large area of γH2AX staining (arrow) over the XY body, there is extensive autosomal H2AX phosphorylation (arrows).
T11922 1068-1069 -LRB- denotes (
T11923 1069-1070 LS denotes H
T11924 1150-1152 VBZ denotes is
T11925 1070-1071 -RRB- denotes )
T11926 1072-1074 IN denotes In
T11927 1075-1083 NN denotes addition
T11928 1084-1086 IN denotes to
T11929 1087-1088 DT denotes a
T11930 1095-1099 NN denotes area
T11931 1089-1094 JJ denotes large
T11932 1100-1102 IN denotes of
T11933 1103-1108 NN denotes γH2AX
T11934 1109-1117 NN denotes staining
T11935 1118-1119 -LRB- denotes (
T11936 1119-1124 NN denotes arrow
T11937 1124-1125 -RRB- denotes )
T11938 1126-1130 IN denotes over
T11939 1131-1134 DT denotes the
T11940 1138-1142 NN denotes body
T11941 1135-1137 NN denotes XY
T11942 1142-1144 , denotes ,
T11943 1144-1149 EX denotes there
T11944 1153-1162 JJ denotes extensive
T11945 1178-1193 NN denotes phosphorylation
T11946 1163-1172 JJ denotes autosomal
T11947 1173-1177 NN denotes H2AX
T11948 1194-1195 -LRB- denotes (
T11949 1195-1201 NNS denotes arrows
T11950 1201-1202 -RRB- denotes )
T11951 1202-1203 . denotes .
T11952 1203-1314 sentence denotes (I, J) Note that in wild-type pachytene spermatocytes, TOPBP1 is present only over the XY body (yellow arrow).
T11953 1204-1205 -LRB- denotes (
T11954 1205-1206 LS denotes I
T11955 1211-1215 VB denotes Note
T11956 1206-1208 , denotes ,
T11957 1208-1209 LS denotes J
T11958 1209-1210 -RRB- denotes )
T11959 1216-1220 IN denotes that
T11960 1266-1268 VBZ denotes is
T11961 1221-1223 IN denotes in
T11962 1224-1228 JJ denotes wild
T11963 1229-1233 NN denotes type
T11964 1228-1229 HYPH denotes -
T11965 1244-1257 NNS denotes spermatocytes
T11966 1234-1243 NN denotes pachytene
T11967 1257-1259 , denotes ,
T11968 1259-1265 NN denotes TOPBP1
T11969 1269-1276 JJ denotes present
T11970 1277-1281 RB denotes only
T11971 1282-1286 IN denotes over
T11972 1287-1290 DT denotes the
T11973 1294-1298 NN denotes body
T11974 1291-1293 NN denotes XY
T11975 1299-1300 -LRB- denotes (
T11976 1307-1312 NN denotes arrow
T11977 1300-1306 JJ denotes yellow
T11978 1312-1313 -RRB- denotes )
T11979 1313-1314 . denotes .
T11980 1314-1475 sentence denotes In the mutant (J), an arrow denotes one area of intensive staining that may be over the sex chromosomes, but many other chromosome cores are positively stained.
T11981 1315-1317 IN denotes In
T11982 1343-1350 VBZ denotes denotes
T11983 1318-1321 DT denotes the
T11984 1322-1328 NN denotes mutant
T11985 1329-1330 -LRB- denotes (
T11986 1330-1331 NN denotes J
T11987 1331-1332 -RRB- denotes )
T11988 1332-1334 , denotes ,
T11989 1334-1336 DT denotes an
T11990 1337-1342 NN denotes arrow
T11991 1351-1354 CD denotes one
T11992 1355-1359 NN denotes area
T11993 1360-1362 IN denotes of
T11994 1363-1372 JJ denotes intensive
T11995 1373-1381 NN denotes staining
T11996 1382-1386 WDT denotes that
T11997 1391-1393 VB denotes be
T11998 1387-1390 MD denotes may
T11999 1394-1398 IN denotes over
T12000 1399-1402 DT denotes the
T12001 1407-1418 NNS denotes chromosomes
T12002 1403-1406 NN denotes sex
T12003 1418-1420 , denotes ,
T12004 1420-1423 CC denotes but
T12005 1424-1428 JJ denotes many
T12006 1446-1451 NNS denotes cores
T12007 1429-1434 JJ denotes other
T12008 1435-1445 NN denotes chromosome
T12009 1467-1474 VBN denotes stained
T12010 1452-1455 VBP denotes are
T12011 1456-1466 RB denotes positively
T12012 1474-1475 . denotes .
T12013 1475-1539 sentence denotes (K, L) RPA persists along synapsed cores in the mutant, not WT.
T12014 1476-1477 -LRB- denotes (
T12015 1477-1478 LS denotes K
T12016 1487-1495 VBZ denotes persists
T12017 1478-1480 , denotes ,
T12018 1480-1481 LS denotes L
T12019 1481-1482 -RRB- denotes )
T12020 1483-1486 NN denotes RPA
T12021 1496-1501 IN denotes along
T12022 1502-1510 VBN denotes synapsed
T12023 1511-1516 NNS denotes cores
T12024 1517-1519 IN denotes in
T12025 1520-1523 DT denotes the
T12026 1524-1530 NN denotes mutant
T12027 1530-1532 , denotes ,
T12028 1532-1535 CC denotes not
T12029 1536-1538 NN denotes WT
T12030 1538-1539 . denotes .
T12031 1539-1592 sentence denotes (M, N) Arrows indicate examples of MLH3 foci on SCs.
T12032 1540-1541 -LRB- denotes (
T12033 1541-1542 LS denotes M
T12034 1554-1562 VBP denotes indicate
T12035 1542-1544 , denotes ,
T12036 1544-1545 LS denotes N
T12037 1545-1546 -RRB- denotes )
T12038 1547-1553 NNS denotes Arrows
T12039 1563-1571 NNS denotes examples
T12040 1572-1574 IN denotes of
T12041 1575-1579 NN denotes MLH3
T12042 1580-1584 NNS denotes foci
T12043 1585-1587 IN denotes on
T12044 1588-1591 NNS denotes SCs
T12045 1591-1592 . denotes .
T12046 1592-1676 sentence denotes (O) In WT late pachytene spermatocytes, RAD51 is present only at background levels.
T12047 1593-1594 -LRB- denotes (
T12048 1594-1595 LS denotes O
T12049 1639-1641 VBZ denotes is
T12050 1595-1596 -RRB- denotes )
T12051 1597-1599 IN denotes In
T12052 1600-1602 NN denotes WT
T12053 1618-1631 NNS denotes spermatocytes
T12054 1603-1607 JJ denotes late
T12055 1608-1617 NN denotes pachytene
T12056 1631-1633 , denotes ,
T12057 1633-1638 NN denotes RAD51
T12058 1642-1649 JJ denotes present
T12059 1650-1654 RB denotes only
T12060 1655-1657 IN denotes at
T12061 1658-1668 NN denotes background
T12062 1669-1675 NNS denotes levels
T12063 1675-1676 . denotes .
T12064 1676-1785 sentence denotes (P) As in (F), extensive RAD51 staining delineates SCs in mutant pachytene nuclei (indicated by white arcs).
T12065 1677-1678 -LRB- denotes (
T12066 1678-1679 LS denotes P
T12067 1717-1727 VBZ denotes delineates
T12068 1679-1680 -RRB- denotes )
T12069 1681-1683 IN denotes As
T12070 1684-1686 IN denotes in
T12071 1687-1688 -LRB- denotes (
T12072 1688-1689 NN denotes F
T12073 1689-1690 -RRB- denotes )
T12074 1690-1692 , denotes ,
T12075 1692-1701 JJ denotes extensive
T12076 1708-1716 NN denotes staining
T12077 1702-1707 NN denotes RAD51
T12078 1728-1731 NNS denotes SCs
T12079 1732-1734 IN denotes in
T12080 1735-1741 NN denotes mutant
T12081 1752-1758 NNS denotes nuclei
T12082 1742-1751 NN denotes pachytene
T12083 1759-1760 -LRB- denotes (
T12084 1760-1769 VBN denotes indicated
T12085 1770-1772 IN denotes by
T12086 1773-1778 JJ denotes white
T12087 1779-1783 NNS denotes arcs
T12088 1783-1784 -RRB- denotes )
T12089 1784-1785 . denotes .
T12090 1785-1883 sentence denotes MLH1 foci colocalize with these tracts (arrows) at the typical 1–2 foci per chromosome as in (M).
T12091 1786-1790 NN denotes MLH1
T12092 1791-1795 NNS denotes foci
T12093 1796-1806 VBP denotes colocalize
T12094 1807-1811 IN denotes with
T12095 1812-1817 DT denotes these
T12096 1818-1824 NNS denotes tracts
T12097 1825-1826 -LRB- denotes (
T12098 1826-1832 NNS denotes arrows
T12099 1832-1833 -RRB- denotes )
T12100 1834-1836 IN denotes at
T12101 1837-1840 DT denotes the
T12102 1853-1857 NNS denotes foci
T12103 1841-1848 JJ denotes typical
T12104 1849-1850 CD denotes 1
T12105 1851-1852 CD denotes 2
T12106 1850-1851 SYM denotes –
T12107 1858-1861 IN denotes per
T12108 1862-1872 NN denotes chromosome
T12109 1873-1875 IN denotes as
T12110 1876-1878 IN denotes in
T12111 1879-1880 -LRB- denotes (
T12112 1880-1881 NN denotes M
T12113 1881-1882 -RRB- denotes )
T12114 1882-1883 . denotes .
R7876 T11701 T11702 amod Immunohistochemical,Analysis
R7877 T11703 T11702 prep of,Analysis
R7878 T11704 T11705 compound Pachytene,Chromosomes
R7879 T11705 T11703 pobj Chromosomes,of
R7880 T11706 T11705 compound Spermatocyte,Chromosomes
R7881 T11708 T11709 compound Surface,spread
R7882 T11709 T11711 compound spread,chromosomes
R7883 T11710 T11709 punct -,spread
R7884 T11711 T11712 nsubjpass chromosomes,immunolabeled
R7885 T11713 T11712 auxpass were,immunolabeled
R7886 T11714 T11712 prep with,immunolabeled
R7887 T11715 T11716 det the,antibodies
R7888 T11716 T11714 pobj antibodies,with
R7889 T11717 T11716 amod indicated,antibodies
R7890 T11718 T11716 cc and,antibodies
R7891 T11719 T11716 conj fluorophores,antibodies
R7892 T11720 T11712 punct .,immunolabeled
R7893 T11722 T11723 mark As,indicated
R7894 T11723 T11724 advcl indicated,were
R7895 T11725 T11723 prep in,indicated
R7896 T11726 T11727 det the,right
R7897 T11727 T11725 pobj right,in
R7898 T11728 T11727 amod upper,right
R7899 T11729 T11727 prep of,right
R7900 T11730 T11731 det each,panel
R7901 T11731 T11729 pobj panel,of
R7902 T11732 T11724 punct ", ",were
R7903 T11733 T11724 nsubj cells,were
R7904 T11734 T11724 prep from,were
R7905 T11735 T11736 amod wild,type
R7906 T11736 T11734 pobj type,from
R7907 T11737 T11736 punct (,type
R7908 T11738 T11736 appos WT,type
R7909 T11739 T11738 punct ", ",WT
R7910 T11740 T11741 preconj either,+
R7911 T11741 T11738 appos +,WT
R7912 T11742 T11741 punct +,+
R7913 T11743 T11741 punct /,+
R7914 T11744 T11741 cc or,+
R7915 T11745 T11741 conj Trip13Gt,+
R7916 T11746 T11745 punct /,Trip13Gt
R7917 T11747 T11745 punct +,Trip13Gt
R7918 T11748 T11736 punct ),type
R7919 T11749 T11736 cc or,type
R7920 T11750 T11751 compound Trip13Gt,Gt
R7921 T11751 T11736 conj Gt,type
R7922 T11752 T11751 punct /,Gt
R7923 T11753 T11751 punct (,Gt
R7924 T11754 T11751 appos Mut,Gt
R7925 T11755 T11724 punct ),were
R7926 T11756 T11724 punct .,were
R7927 T11758 T11759 expl There,were
R7928 T11760 T11761 det no,differences
R7929 T11761 T11759 attr differences,were
R7930 T11762 T11761 acl seen,differences
R7931 T11763 T11762 prep between,seen
R7932 T11764 T11763 pobj heterozygotes,between
R7933 T11765 T11764 cc and,heterozygotes
R7934 T11766 T11767 punct +,+
R7935 T11767 T11769 punct +,spermatocytes
R7936 T11768 T11767 punct /,+
R7937 T11769 T11764 conj spermatocytes,heterozygotes
R7938 T11770 T11759 punct .,were
R7939 T11772 T11773 punct (,A
R7940 T11773 T11774 meta A,nucleus
R7941 T11775 T11773 punct ),A
R7942 T11776 T11774 det A,nucleus
R7943 T11777 T11774 compound mutant,nucleus
R7944 T11778 T11774 compound pachytene,nucleus
R7945 T11779 T11774 prep with,nucleus
R7946 T11780 T11781 amod full,synapsis
R7947 T11781 T11779 pobj synapsis,with
R7948 T11782 T11774 punct .,nucleus
R7949 T11784 T11785 nsubj Areas,are
R7950 T11786 T11784 prep of,Areas
R7951 T11787 T11788 compound SYCP1,SYCP3
R7952 T11788 T11790 compound SYCP3,colabeling
R7953 T11789 T11788 punct /,SYCP3
R7954 T11790 T11786 pobj colabeling,of
R7955 T11791 T11785 acomp yellow,are
R7956 T11792 T11785 punct .,are
R7957 T11794 T11795 punct (,B
R7958 T11795 T11796 meta B,nucleus
R7959 T11797 T11795 punct –,B
R7960 T11798 T11795 dep E,B
R7961 T11799 T11795 punct ),B
R7962 T11800 T11796 compound Spermatocytes,nucleus
R7963 T11801 T11796 prep from,nucleus
R7964 T11802 T11803 nummod 17.5,d
R7965 T11803 T11804 npadvmod d,postpartum
R7966 T11804 T11805 amod postpartum,mutant
R7967 T11805 T11801 pobj mutant,from
R7968 T11806 T11796 punct .,nucleus
R7969 T11808 T11809 amod Asynapsed,chromosomes
R7970 T11809 T11810 nsubjpass chromosomes,indicated
R7971 T11811 T11809 cc or,chromosomes
R7972 T11812 T11809 conj regions,chromosomes
R7973 T11813 T11812 prep of,regions
R7974 T11814 T11813 pobj chromosomes,of
R7975 T11815 T11810 auxpass are,indicated
R7976 T11816 T11810 agent by,indicated
R7977 T11817 T11818 amod white,arrows
R7978 T11818 T11816 pobj arrows,by
R7979 T11819 T11817 cc and,white
R7980 T11820 T11817 conj yellow,white
R7981 T11821 T11810 punct ", ",indicated
R7982 T11822 T11810 advmod respectively,indicated
R7983 T11823 T11810 punct .,indicated
R7984 T11825 T11826 prep Unlike,are
R7985 T11827 T11828 det the,distribution
R7986 T11828 T11825 pobj distribution,Unlike
R7987 T11829 T11828 amod normal,distribution
R7988 T11830 T11828 prep in,distribution
R7989 T11831 T11832 amod wild,type
R7990 T11832 T11834 compound type,spermatocytes
R7991 T11833 T11832 punct -,type
R7992 T11834 T11830 pobj spermatocytes,in
R7993 T11835 T11834 compound pachytene,spermatocytes
R7994 T11836 T11837 punct (,C
R7995 T11837 T11828 parataxis C,distribution
R7996 T11838 T11837 punct ),C
R7997 T11839 T11826 punct ", ",are
R7998 T11840 T11841 compound BLM,foci
R7999 T11841 T11826 nsubj foci,are
R8000 T11842 T11826 acomp present,are
R8001 T11843 T11826 prep on,are
R8002 T11844 T11845 amod synapsed,chromosomes
R8003 T11845 T11843 pobj chromosomes,on
R8004 T11846 T11845 compound pachytene,chromosomes
R8005 T11847 T11845 prep in,chromosomes
R8006 T11848 T11849 det the,mutant
R8007 T11849 T11847 pobj mutant,in
R8008 T11850 T11851 punct (,D
R8009 T11851 T11826 parataxis D,are
R8010 T11852 T11851 punct ),D
R8011 T11853 T11826 punct .,are
R8012 T11855 T11856 compound RAD51,foci
R8013 T11856 T11857 nsubj foci,disappear
R8014 T11858 T11856 punct ", ",foci
R8015 T11859 T11860 dep which,are
R8016 T11860 T11856 relcl are,foci
R8017 T11861 T11860 acomp abundant,are
R8018 T11862 T11863 advmod earlier,in
R8019 T11863 T11860 prep in,are
R8020 T11864 T11863 pobj prophase,in
R8021 T11865 T11857 punct ", ",disappear
R8022 T11866 T11857 prep from,disappear
R8023 T11867 T11866 pobj autosomes,from
R8024 T11868 T11857 prep in,disappear
R8025 T11869 T11870 amod wild,type
R8026 T11870 T11872 compound type,nuclei
R8027 T11871 T11870 punct -,type
R8028 T11872 T11868 pobj nuclei,in
R8029 T11873 T11872 compound pachytene,nuclei
R8030 T11874 T11875 punct (,E
R8031 T11875 T11857 parataxis E,disappear
R8032 T11876 T11875 punct ),E
R8033 T11877 T11857 cc and,disappear
R8034 T11878 T11879 det the,bulk
R8035 T11879 T11880 nsubj bulk,is
R8036 T11880 T11857 conj is,disappear
R8037 T11881 T11879 prep of,bulk
R8038 T11882 T11881 pobj staining,of
R8039 T11883 T11880 prep over,is
R8040 T11884 T11885 det the,body
R8041 T11885 T11883 pobj body,over
R8042 T11886 T11885 compound XY,body
R8043 T11887 T11888 punct (,arrow
R8044 T11888 T11880 parataxis arrow,is
R8045 T11889 T11888 punct ),arrow
R8046 T11890 T11880 punct .,is
R8047 T11892 T11893 punct (,F
R8048 T11893 T11894 meta F,persists
R8049 T11895 T11893 punct ),F
R8050 T11896 T11894 nsubj RAD51,persists
R8051 T11897 T11894 prep on,persists
R8052 T11898 T11899 det the,chromosomes
R8053 T11899 T11897 pobj chromosomes,on
R8054 T11900 T11899 amod synapsed,chromosomes
R8055 T11901 T11899 compound mutant,chromosomes
R8056 T11902 T11903 punct (,arrows
R8057 T11903 T11894 parataxis arrows,persists
R8058 T11904 T11903 punct ),arrows
R8059 T11905 T11894 punct .,persists
R8060 T11907 T11908 punct (,G
R8061 T11908 T11909 meta G,restricted
R8062 T11910 T11908 punct ),G
R8063 T11911 T11912 compound H2AX,phosphorylation
R8064 T11912 T11909 nsubjpass phosphorylation,restricted
R8065 T11913 T11909 auxpass is,restricted
R8066 T11914 T11909 prep to,restricted
R8067 T11915 T11916 det the,body
R8068 T11916 T11914 pobj body,to
R8069 T11917 T11916 compound XY,body
R8070 T11918 T11909 prep in,restricted
R8071 T11919 T11918 pobj WT,in
R8072 T11920 T11909 punct .,restricted
R8073 T11922 T11923 punct (,H
R8074 T11923 T11924 meta H,is
R8075 T11925 T11923 punct ),H
R8076 T11926 T11924 prep In,is
R8077 T11927 T11926 pobj addition,In
R8078 T11928 T11927 prep to,addition
R8079 T11929 T11930 det a,area
R8080 T11930 T11928 pobj area,to
R8081 T11931 T11930 amod large,area
R8082 T11932 T11930 prep of,area
R8083 T11933 T11934 compound γH2AX,staining
R8084 T11934 T11932 pobj staining,of
R8085 T11935 T11936 punct (,arrow
R8086 T11936 T11930 parataxis arrow,area
R8087 T11937 T11936 punct ),arrow
R8088 T11938 T11930 prep over,area
R8089 T11939 T11940 det the,body
R8090 T11940 T11938 pobj body,over
R8091 T11941 T11940 compound XY,body
R8092 T11942 T11924 punct ", ",is
R8093 T11943 T11924 expl there,is
R8094 T11944 T11945 amod extensive,phosphorylation
R8095 T11945 T11924 attr phosphorylation,is
R8096 T11946 T11945 amod autosomal,phosphorylation
R8097 T11947 T11945 compound H2AX,phosphorylation
R8098 T11948 T11949 punct (,arrows
R8099 T11949 T11924 parataxis arrows,is
R8100 T11950 T11949 punct ),arrows
R8101 T11951 T11924 punct .,is
R8102 T11953 T11954 punct (,I
R8103 T11954 T11955 meta I,Note
R8104 T11956 T11954 punct ", ",I
R8105 T11957 T11954 dep J,I
R8106 T11958 T11954 punct ),I
R8107 T11959 T11960 mark that,is
R8108 T11960 T11955 ccomp is,Note
R8109 T11961 T11960 prep in,is
R8110 T11962 T11963 amod wild,type
R8111 T11963 T11965 compound type,spermatocytes
R8112 T11964 T11963 punct -,type
R8113 T11965 T11961 pobj spermatocytes,in
R8114 T11966 T11965 compound pachytene,spermatocytes
R8115 T11967 T11960 punct ", ",is
R8116 T11968 T11960 nsubj TOPBP1,is
R8117 T11969 T11960 acomp present,is
R8118 T11970 T11971 advmod only,over
R8119 T11971 T11960 prep over,is
R8120 T11972 T11973 det the,body
R8121 T11973 T11971 pobj body,over
R8122 T11974 T11973 compound XY,body
R8123 T11975 T11976 punct (,arrow
R8124 T11976 T11960 parataxis arrow,is
R8125 T11977 T11976 amod yellow,arrow
R8126 T11978 T11976 punct ),arrow
R8127 T11979 T11955 punct .,Note
R8128 T11981 T11982 prep In,denotes
R8129 T11983 T11984 det the,mutant
R8130 T11984 T11981 pobj mutant,In
R8131 T11985 T11986 punct (,J
R8132 T11986 T11984 parataxis J,mutant
R8133 T11987 T11986 punct ),J
R8134 T11988 T11982 punct ", ",denotes
R8135 T11989 T11990 det an,arrow
R8136 T11990 T11982 nsubj arrow,denotes
R8137 T11991 T11992 nummod one,area
R8138 T11992 T11982 dobj area,denotes
R8139 T11993 T11992 prep of,area
R8140 T11994 T11995 amod intensive,staining
R8141 T11995 T11993 pobj staining,of
R8142 T11996 T11997 dep that,be
R8143 T11997 T11992 relcl be,area
R8144 T11998 T11997 aux may,be
R8145 T11999 T11997 prep over,be
R8146 T12000 T12001 det the,chromosomes
R8147 T12001 T11999 pobj chromosomes,over
R8148 T12002 T12001 compound sex,chromosomes
R8149 T12003 T11982 punct ", ",denotes
R8150 T12004 T11982 cc but,denotes
R8151 T12005 T12006 amod many,cores
R8152 T12006 T12009 nsubjpass cores,stained
R8153 T12007 T12006 amod other,cores
R8154 T12008 T12006 compound chromosome,cores
R8155 T12009 T11982 conj stained,denotes
R8156 T12010 T12009 auxpass are,stained
R8157 T12011 T12009 advmod positively,stained
R8158 T12012 T12009 punct .,stained
R8159 T12014 T12015 punct (,K
R8160 T12015 T12016 meta K,persists
R8161 T12017 T12015 punct ", ",K
R8162 T12018 T12015 dep L,K
R8163 T12019 T12015 punct ),K
R8164 T12020 T12016 nsubj RPA,persists
R8165 T12021 T12016 prep along,persists
R8166 T12022 T12023 amod synapsed,cores
R8167 T12023 T12021 pobj cores,along
R8168 T12024 T12016 prep in,persists
R8169 T12025 T12026 det the,mutant
R8170 T12026 T12024 pobj mutant,in
R8171 T12027 T12026 punct ", ",mutant
R8172 T12028 T12026 cc not,mutant
R8173 T12029 T12026 conj WT,mutant
R8174 T12030 T12016 punct .,persists
R8175 T12032 T12033 punct (,M
R8176 T12033 T12034 meta M,indicate
R8177 T12035 T12033 punct ", ",M
R8178 T12036 T12033 dep N,M
R8179 T12037 T12033 punct ),M
R8180 T12038 T12034 nsubj Arrows,indicate
R8181 T12039 T12034 dobj examples,indicate
R8182 T12040 T12039 prep of,examples
R8183 T12041 T12042 compound MLH3,foci
R8184 T12042 T12040 pobj foci,of
R8185 T12043 T12042 prep on,foci
R8186 T12044 T12043 pobj SCs,on
R8187 T12045 T12034 punct .,indicate
R8188 T12047 T12048 punct (,O
R8189 T12048 T12049 meta O,is
R8190 T12050 T12048 punct ),O
R8191 T12051 T12049 prep In,is
R8192 T12052 T12053 nmod WT,spermatocytes
R8193 T12053 T12051 pobj spermatocytes,In
R8194 T12054 T12053 amod late,spermatocytes
R8195 T12055 T12053 compound pachytene,spermatocytes
R8196 T12056 T12049 punct ", ",is
R8197 T12057 T12049 nsubj RAD51,is
R8198 T12058 T12049 acomp present,is
R8199 T12059 T12060 advmod only,at
R8200 T12060 T12049 prep at,is
R8201 T12061 T12062 compound background,levels
R8202 T12062 T12060 pobj levels,at
R8203 T12063 T12049 punct .,is
R8204 T12065 T12066 punct (,P
R8205 T12066 T12067 meta P,delineates
R8206 T12068 T12066 punct ),P
R8207 T12069 T12067 prep As,delineates
R8208 T12070 T12069 prep in,As
R8209 T12071 T12072 punct (,F
R8210 T12072 T12070 pobj F,in
R8211 T12073 T12072 punct ),F
R8212 T12074 T12067 punct ", ",delineates
R8213 T12075 T12076 amod extensive,staining
R8214 T12076 T12067 nsubj staining,delineates
R8215 T12077 T12076 compound RAD51,staining
R8216 T12078 T12067 dobj SCs,delineates
R8217 T12079 T12078 prep in,SCs
R8218 T12080 T12081 compound mutant,nuclei
R8219 T12081 T12079 pobj nuclei,in
R8220 T12082 T12081 compound pachytene,nuclei
R8221 T12083 T12078 punct (,SCs
R8222 T12084 T12078 acl indicated,SCs
R8223 T12085 T12084 agent by,indicated
R8224 T12086 T12087 amod white,arcs
R8225 T12087 T12085 pobj arcs,by
R8226 T12088 T12067 punct ),delineates
R8227 T12089 T12067 punct .,delineates
R8228 T12091 T12092 compound MLH1,foci
R8229 T12092 T12093 nsubj foci,colocalize
R8230 T12094 T12093 prep with,colocalize
R8231 T12095 T12096 det these,tracts
R8232 T12096 T12094 pobj tracts,with
R8233 T12097 T12098 punct (,arrows
R8234 T12098 T12096 parataxis arrows,tracts
R8235 T12099 T12098 punct ),arrows
R8236 T12100 T12093 prep at,colocalize
R8237 T12101 T12102 det the,foci
R8238 T12102 T12100 pobj foci,at
R8239 T12103 T12102 amod typical,foci
R8240 T12104 T12105 quantmod 1,2
R8241 T12105 T12102 nummod 2,foci
R8242 T12106 T12105 punct –,2
R8243 T12107 T12102 prep per,foci
R8244 T12108 T12107 pobj chromosome,per
R8245 T12109 T12093 prep as,colocalize
R8246 T12110 T12109 prep in,as
R8247 T12111 T12112 punct (,M
R8248 T12112 T12110 pobj M,in
R8249 T12113 T12112 punct ),M
R8250 T12114 T12093 punct .,colocalize

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11576 439-444 PR:000015865 denotes SYCP3
T11577 474-487 CL:0000017 denotes Spermatocytes
T11578 488-495 GO:0005634 denotes nucleus
T11579 512-518 GO:0007567 denotes partum
T11580 528-536 GO:0007129 denotes synapsed
T11581 675-684 GO:0000239 denotes pachytene
T11582 685-698 CL:0000017 denotes spermatocytes
T11583 704-707 PR:000004759 denotes BLM
T11584 728-736 GO:0007129 denotes synapsed
T11585 737-746 GO:0000239 denotes pachytene
T11586 778-783 PR:000013672 denotes RAD51
T11587 820-828 GO:0051324 denotes prophase
T11588 845-854 GO:0030849 denotes autosomes
T11589 868-877 GO:0000239 denotes pachytene
T11590 878-884 GO:0005634 denotes nuclei
T11591 926-933 GO:0001741 denotes XY body
T11592 947-952 PR:000013672 denotes RAD51
T11593 969-977 GO:0007129 denotes synapsed
T11594 1011-1015 PR:000008418 denotes H2AX
T11595 1053-1060 GO:0001741 denotes XY body
T11596 1135-1142 GO:0001741 denotes XY body
T11597 1163-1172 GO:0030849 denotes autosomal
T11598 1173-1177 PR:000008418 denotes H2AX
T11599 1234-1243 GO:0000239 denotes pachytene
T11600 1244-1257 CL:0000017 denotes spermatocytes
T11601 1259-1265 PR:000016548 denotes TOPBP1
T11602 1291-1298 GO:0001741 denotes XY body
T11603 1403-1418 GO:0000803 denotes sex chromosomes
T11604 1483-1486 GO:0005662 denotes RPA
T11605 1502-1510 GO:0007129 denotes synapsed
T11606 1575-1579 PR:000010443 denotes MLH3
T11607 1588-1591 GO:0000795 denotes SCs
T11608 1608-1617 GO:0000239 denotes pachytene
T11609 1618-1631 CL:0000017 denotes spermatocytes
T11610 1633-1638 PR:000013672 denotes RAD51
T11611 1702-1707 PR:000013672 denotes RAD51
T11612 1728-1731 GO:0000795 denotes SCs
T11613 1742-1751 GO:0000239 denotes pachytene
T11614 1752-1758 GO:0005634 denotes nuclei
T11615 1786-1790 PR:000010442 denotes MLH1
T11565 42-51 GO:0000239 denotes Pachytene
T11566 52-64 CL:0000017 denotes Spermatocyte
T11567 142-152 GO:0042571 denotes antibodies
T11568 157-169 CHEBI:51217 denotes fluorophores
T11569 263-269 PR:000016672 denotes Trip13
T11570 278-284 PR:000016672 denotes Trip13
T11571 358-371 CL:0000017 denotes spermatocytes
T11572 386-395 GO:0000239 denotes pachytene
T11573 396-403 GO:0005634 denotes nucleus
T11574 414-422 GO:0007129 denotes synapsis
T11575 433-438 PR:000015862 denotes SYCP1

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T11616 42-51 GO:0000239 denotes Pachytene
T11617 52-64 CL:0000017 denotes Spermatocyte
T11618 65-76 GO_SO_EXT:chromosome denotes Chromosomes
T11619 92-103 GO_SO_EXT:chromosome denotes chromosomes
T11620 142-152 GO:0042571 denotes antibodies
T11621 157-169 CHEBI_EXT:51217 denotes fluorophores
T11622 218-223 CL_GO_EXT:cell denotes cells
T11623 234-243 SO_EXT:wild_type_entity_or_quality denotes wild type
T11624 245-247 SO_EXT:wild_type_entity_or_quality denotes WT
T11625 256-257 SO_EXT:normal_or_wild_type_or_present denotes +
T11626 258-259 SO_EXT:normal_or_wild_type_or_present denotes +
T11627 263-269 PR_EXT:000016672 denotes Trip13
T11628 272-273 SO_EXT:normal_or_wild_type_or_present denotes +
T11629 278-284 PR_EXT:000016672 denotes Trip13
T11630 354-355 SO_EXT:normal_or_wild_type_or_present denotes +
T11631 356-357 SO_EXT:normal_or_wild_type_or_present denotes +
T11632 358-371 CL:0000017 denotes spermatocytes
T11633 379-385 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11634 386-395 GO:0000239 denotes pachytene
T11635 396-403 GO:0005634 denotes nucleus
T11636 414-422 GO:0007129 denotes synapsis
T11637 433-438 PR_EXT:000015862 denotes SYCP1
T11638 439-444 PR_EXT:000015865 denotes SYCP3
T11639 447-455 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeling
T11640 474-487 CL:0000017 denotes Spermatocytes
T11641 488-495 GO:0005634 denotes nucleus
T11642 512-518 GO:0007567 denotes partum
T11643 519-525 SO_EXT:sequence_altered_entity denotes mutant
T11644 528-536 GO:0007129 denotes synapsed
T11645 537-548 GO_SO_EXT:chromosome denotes chromosomes
T11646 552-574 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes regions of chromosomes
T11647 665-674 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11648 675-684 GO:0000239 denotes pachytene
T11649 685-698 CL:0000017 denotes spermatocytes
T11650 704-707 PR_EXT:000004759 denotes BLM
T11651 728-736 GO:0007129 denotes synapsed
T11652 737-746 GO:0000239 denotes pachytene
T11653 747-758 GO_SO_EXT:chromosome denotes chromosomes
T11654 766-772 SO_EXT:sequence_altered_entity denotes mutant
T11655 778-783 PR_EXT:000013672 denotes RAD51
T11656 820-828 GO:0051324 denotes prophase
T11657 845-854 GO:0030849 denotes autosomes
T11658 858-867 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11659 868-877 GO:0000239 denotes pachytene
T11660 878-884 GO:0005634 denotes nuclei
T11661 926-933 GO:0001741 denotes XY body
T11662 947-952 PR_EXT:000013672 denotes RAD51
T11663 969-977 GO:0007129 denotes synapsed
T11664 978-984 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11665 985-996 GO_SO_EXT:chromosome denotes chromosomes
T11666 1011-1015 PR_EXT:000008418 denotes H2AX
T11667 1016-1031 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T11668 1053-1060 GO:0001741 denotes XY body
T11669 1064-1066 SO_EXT:wild_type_entity_or_quality denotes WT
T11670 1135-1142 GO:0001741 denotes XY body
T11671 1163-1172 GO:0030849 denotes autosomal
T11672 1173-1177 PR_EXT:000008418 denotes H2AX
T11673 1178-1193 GO_PATO_EXT:phosphorylation_process denotes phosphorylation
T11674 1224-1233 SO_EXT:wild_type_entity_or_quality denotes wild-type
T11675 1234-1243 GO:0000239 denotes pachytene
T11676 1244-1257 CL:0000017 denotes spermatocytes
T11677 1259-1265 PR_EXT:000016548 denotes TOPBP1
T11678 1291-1298 GO:0001741 denotes XY body
T11679 1322-1328 SO_EXT:sequence_altered_entity denotes mutant
T11680 1403-1418 GO:0000803 denotes sex chromosomes
T11681 1407-1418 GO_SO_EXT:chromosome denotes chromosomes
T11682 1435-1445 GO_SO_EXT:chromosome denotes chromosome
T11683 1483-1486 GO:0005662 denotes RPA
T11684 1502-1510 GO:0007129 denotes synapsed
T11685 1524-1530 SO_EXT:sequence_altered_entity denotes mutant
T11686 1536-1538 SO_EXT:wild_type_entity_or_quality denotes WT
T11687 1575-1579 PR_EXT:000010443 denotes MLH3
T11688 1588-1591 GO:0000795 denotes SCs
T11689 1600-1602 SO_EXT:wild_type_entity_or_quality denotes WT
T11690 1608-1617 GO:0000239 denotes pachytene
T11691 1618-1631 CL:0000017 denotes spermatocytes
T11692 1633-1638 PR_EXT:000013672 denotes RAD51
T11693 1702-1707 PR_EXT:000013672 denotes RAD51
T11694 1728-1731 GO:0000795 denotes SCs
T11695 1735-1741 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T11696 1742-1751 GO:0000239 denotes pachytene
T11697 1752-1758 GO:0005634 denotes nuclei
T11698 1786-1790 PR_EXT:000010442 denotes MLH1
T11699 1798-1806 GO_PATO_EXT:biological_localization_process_or_quality denotes localize
T11700 1862-1872 GO_SO_EXT:chromosome denotes chromosome