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PMC:1941754 / 11956-12974 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T2024 0-2 TO denotes To
T2025 3-12 VB denotes determine
T2026 170-183 VBN denotes immunolabeled
T2027 13-16 DT denotes the
T2028 27-32 NNS denotes types
T2029 17-21 NN denotes germ
T2030 22-26 NN denotes cell
T2031 33-35 IN denotes in
T2032 52-61 VBN denotes expressed
T2033 36-41 WDT denotes which
T2034 42-48 NN denotes TRIP13
T2035 49-51 VBZ denotes is
T2036 61-63 , denotes ,
T2037 63-66 CC denotes and
T2038 67-69 TO denotes to
T2039 70-76 VB denotes assess
T2040 77-85 JJ denotes possible
T2041 86-96 NN denotes expression
T2042 97-99 IN denotes in
T2043 100-103 DT denotes the
T2044 104-110 NN denotes mutant
T2045 111-113 IN denotes by
T2046 114-119 NNS denotes means
T2047 120-125 JJ denotes other
T2048 126-130 IN denotes than
T2049 131-138 NNP denotes Western
T2050 139-147 NN denotes analysis
T2051 147-149 , denotes ,
T2052 149-155 NN denotes testis
T2053 156-164 NNS denotes sections
T2054 165-169 VBD denotes were
T2055 184-187 IN denotes for
T2056 188-194 NN denotes TRIP13
T2057 195-200 VBG denotes using
T2058 201-202 DT denotes a
T2059 234-242 NN denotes antibody
T2060 203-213 JJ denotes polyclonal
T2061 222-233 NN denotes antipeptide
T2062 214-221 NN denotes chicken
T2063 243-244 -LRB- denotes (
T2064 244-247 VB denotes see
T2065 248-257 NNS denotes Materials
T2066 258-261 CC denotes and
T2067 262-269 NNS denotes Methods
T2068 269-270 -RRB- denotes )
T2069 270-271 . denotes .
T2070 271-389 sentence denotes The most intensely labeled cells in control testes were Type B spermatogonia and leptotene spermatocytes (Figure 1F).
T2071 272-275 DT denotes The
T2072 299-304 NNS denotes cells
T2073 276-280 RBS denotes most
T2074 281-290 RB denotes intensely
T2075 291-298 VBN denotes labeled
T2076 323-327 VBD denotes were
T2077 305-307 IN denotes in
T2078 308-315 NN denotes control
T2079 316-322 NNS denotes testes
T2080 328-332 NN denotes Type
T2081 333-334 NN denotes B
T2082 335-348 NNS denotes spermatogonia
T2083 349-352 CC denotes and
T2084 353-362 NN denotes leptotene
T2085 363-376 NNS denotes spermatocytes
T2086 377-378 -LRB- denotes (
T2087 385-387 NN denotes 1F
T2088 378-384 NN denotes Figure
T2089 387-388 -RRB- denotes )
T2090 388-389 . denotes .
T2091 389-515 sentence denotes Zygotene/pachytene spermatocytes stained less strongly, and there was no detectable staining in late pachytene spermatocytes.
T2092 390-398 NN denotes Zygotene
T2093 399-408 NN denotes pachytene
T2094 398-399 HYPH denotes /
T2095 409-422 NNS denotes spermatocytes
T2096 423-430 VBD denotes stained
T2097 431-435 RBR denotes less
T2098 436-444 RB denotes strongly
T2099 444-446 , denotes ,
T2100 446-449 CC denotes and
T2101 450-455 EX denotes there
T2102 456-459 VBD denotes was
T2103 460-462 DT denotes no
T2104 474-482 NN denotes staining
T2105 463-473 JJ denotes detectable
T2106 483-485 IN denotes in
T2107 486-490 JJ denotes late
T2108 491-500 NN denotes pachytene
T2109 501-514 NNS denotes spermatocytes
T2110 514-515 . denotes .
T2111 515-556 sentence denotes TRIP13 appeared to be nuclear localized.
T2112 516-522 NN denotes TRIP13
T2113 523-531 VBD denotes appeared
T2114 532-534 TO denotes to
T2115 535-537 VB denotes be
T2116 538-545 JJ denotes nuclear
T2117 546-555 VBN denotes localized
T2118 555-556 . denotes .
T2119 556-637 sentence denotes There was no such staining of nuclei in mutant seminiferous tubules (Figure 1F).
T2120 557-562 EX denotes There
T2121 563-566 VBD denotes was
T2122 567-569 DT denotes no
T2123 575-583 NN denotes staining
T2124 570-574 JJ denotes such
T2125 584-586 IN denotes of
T2126 587-593 NNS denotes nuclei
T2127 594-596 IN denotes in
T2128 597-603 NN denotes mutant
T2129 617-624 NNS denotes tubules
T2130 604-616 JJ denotes seminiferous
T2131 625-626 -LRB- denotes (
T2132 633-635 NN denotes 1F
T2133 626-632 NN denotes Figure
T2134 635-636 -RRB- denotes )
T2135 636-637 . denotes .
T2136 637-780 sentence denotes To further assess the nuclear localization, TRIP13 was used to probe meiotic chromosomes prepared by surface spreading of spermatocyte nuclei.
T2137 638-640 TO denotes To
T2138 649-655 VB denotes assess
T2139 641-648 RB denotes further
T2140 693-697 VBN denotes used
T2141 656-659 DT denotes the
T2142 668-680 NN denotes localization
T2143 660-667 JJ denotes nuclear
T2144 680-682 , denotes ,
T2145 682-688 NN denotes TRIP13
T2146 689-692 VBD denotes was
T2147 698-700 TO denotes to
T2148 701-706 VB denotes probe
T2149 707-714 JJ denotes meiotic
T2150 715-726 NNS denotes chromosomes
T2151 727-735 VBN denotes prepared
T2152 736-738 IN denotes by
T2153 739-746 NN denotes surface
T2154 747-756 NN denotes spreading
T2155 757-759 IN denotes of
T2156 760-772 NN denotes spermatocyte
T2157 773-779 NNS denotes nuclei
T2158 779-780 . denotes .
T2159 780-956 sentence denotes In wild type, there was diffuse nuclear staining, and no evidence of concentration on SC cores (marked by the axial element protein SYCP3) at any meiotic substage (Figure 1G).
T2160 781-783 IN denotes In
T2161 801-804 VBD denotes was
T2162 784-788 JJ denotes wild
T2163 789-793 NN denotes type
T2164 793-795 , denotes ,
T2165 795-800 EX denotes there
T2166 805-812 JJ denotes diffuse
T2167 821-829 NN denotes staining
T2168 813-820 JJ denotes nuclear
T2169 829-831 , denotes ,
T2170 831-834 CC denotes and
T2171 835-837 DT denotes no
T2172 838-846 NN denotes evidence
T2173 847-849 IN denotes of
T2174 850-863 NN denotes concentration
T2175 864-866 IN denotes on
T2176 867-869 NN denotes SC
T2177 870-875 NNS denotes cores
T2178 876-877 -LRB- denotes (
T2179 877-883 VBN denotes marked
T2180 884-886 IN denotes by
T2181 887-890 DT denotes the
T2182 913-918 NN denotes SYCP3
T2183 891-896 JJ denotes axial
T2184 897-904 NN denotes element
T2185 905-912 NN denotes protein
T2186 918-919 -RRB- denotes )
T2187 920-922 IN denotes at
T2188 923-926 DT denotes any
T2189 935-943 NN denotes substage
T2190 927-934 JJ denotes meiotic
T2191 944-945 -LRB- denotes (
T2192 952-954 NN denotes 1G
T2193 945-951 NN denotes Figure
T2194 954-955 -RRB- denotes )
T2195 955-956 . denotes .
T2196 956-1018 sentence denotes TRIP13 signal was noticeably absent in mutant meiotic nuclei.
T2197 957-963 NN denotes TRIP13
T2198 964-970 NN denotes signal
T2199 971-974 VBD denotes was
T2200 975-985 RB denotes noticeably
T2201 986-992 JJ denotes absent
T2202 993-995 IN denotes in
T2203 996-1002 NN denotes mutant
T2204 1011-1017 NNS denotes nuclei
T2205 1003-1010 JJ denotes meiotic
T2206 1017-1018 . denotes .
R1304 T2024 T2025 aux To,determine
R1305 T2025 T2026 advcl determine,immunolabeled
R1306 T2027 T2028 det the,types
R1307 T2028 T2025 dobj types,determine
R1308 T2029 T2030 compound germ,cell
R1309 T2030 T2028 compound cell,types
R1310 T2031 T2032 prep in,expressed
R1311 T2032 T2028 relcl expressed,types
R1312 T2033 T2031 pobj which,in
R1313 T2034 T2032 nsubjpass TRIP13,expressed
R1314 T2035 T2032 auxpass is,expressed
R1315 T2036 T2025 punct ", ",determine
R1316 T2037 T2025 cc and,determine
R1317 T2038 T2039 aux to,assess
R1318 T2039 T2025 conj assess,determine
R1319 T2040 T2041 amod possible,expression
R1320 T2041 T2039 dobj expression,assess
R1321 T2042 T2041 prep in,expression
R1322 T2043 T2044 det the,mutant
R1323 T2044 T2042 pobj mutant,in
R1324 T2045 T2039 prep by,assess
R1325 T2046 T2045 pobj means,by
R1326 T2047 T2046 amod other,means
R1327 T2048 T2047 prep than,other
R1328 T2049 T2050 compound Western,analysis
R1329 T2050 T2048 pobj analysis,than
R1330 T2051 T2026 punct ", ",immunolabeled
R1331 T2052 T2053 compound testis,sections
R1332 T2053 T2026 nsubjpass sections,immunolabeled
R1333 T2054 T2026 auxpass were,immunolabeled
R1334 T2055 T2026 prep for,immunolabeled
R1335 T2056 T2055 pobj TRIP13,for
R1336 T2057 T2026 advcl using,immunolabeled
R1337 T2058 T2059 det a,antibody
R1338 T2059 T2057 dobj antibody,using
R1339 T2060 T2061 amod polyclonal,antipeptide
R1340 T2061 T2059 compound antipeptide,antibody
R1341 T2062 T2061 compound chicken,antipeptide
R1342 T2063 T2064 punct (,see
R1343 T2064 T2026 parataxis see,immunolabeled
R1344 T2065 T2064 dobj Materials,see
R1345 T2066 T2065 cc and,Materials
R1346 T2067 T2065 conj Methods,Materials
R1347 T2068 T2064 punct ),see
R1348 T2069 T2026 punct .,immunolabeled
R1349 T2071 T2072 det The,cells
R1350 T2072 T2076 nsubj cells,were
R1351 T2073 T2074 advmod most,intensely
R1352 T2074 T2075 advmod intensely,labeled
R1353 T2075 T2072 amod labeled,cells
R1354 T2077 T2072 prep in,cells
R1355 T2078 T2079 compound control,testes
R1356 T2079 T2077 pobj testes,in
R1357 T2080 T2081 compound Type,B
R1358 T2081 T2082 compound B,spermatogonia
R1359 T2082 T2076 attr spermatogonia,were
R1360 T2083 T2082 cc and,spermatogonia
R1361 T2084 T2085 compound leptotene,spermatocytes
R1362 T2085 T2082 conj spermatocytes,spermatogonia
R1363 T2086 T2087 punct (,1F
R1364 T2087 T2076 parataxis 1F,were
R1365 T2088 T2087 compound Figure,1F
R1366 T2089 T2087 punct ),1F
R1367 T2090 T2076 punct .,were
R1368 T2092 T2093 compound Zygotene,pachytene
R1369 T2093 T2095 compound pachytene,spermatocytes
R1370 T2094 T2093 punct /,pachytene
R1371 T2095 T2096 nsubj spermatocytes,stained
R1372 T2097 T2098 advmod less,strongly
R1373 T2098 T2096 advmod strongly,stained
R1374 T2099 T2096 punct ", ",stained
R1375 T2100 T2096 cc and,stained
R1376 T2101 T2102 expl there,was
R1377 T2102 T2096 conj was,stained
R1378 T2103 T2104 det no,staining
R1379 T2104 T2102 attr staining,was
R1380 T2105 T2104 amod detectable,staining
R1381 T2106 T2104 prep in,staining
R1382 T2107 T2108 amod late,pachytene
R1383 T2108 T2109 compound pachytene,spermatocytes
R1384 T2109 T2106 pobj spermatocytes,in
R1385 T2110 T2102 punct .,was
R1386 T2112 T2113 nsubj TRIP13,appeared
R1387 T2114 T2115 aux to,be
R1388 T2115 T2113 xcomp be,appeared
R1389 T2116 T2117 amod nuclear,localized
R1390 T2117 T2115 acomp localized,be
R1391 T2118 T2113 punct .,appeared
R1392 T2120 T2121 expl There,was
R1393 T2122 T2123 det no,staining
R1394 T2123 T2121 attr staining,was
R1395 T2124 T2123 amod such,staining
R1396 T2125 T2123 prep of,staining
R1397 T2126 T2125 pobj nuclei,of
R1398 T2127 T2121 prep in,was
R1399 T2128 T2129 nmod mutant,tubules
R1400 T2129 T2127 pobj tubules,in
R1401 T2130 T2129 amod seminiferous,tubules
R1402 T2131 T2132 punct (,1F
R1403 T2132 T2121 parataxis 1F,was
R1404 T2133 T2132 compound Figure,1F
R1405 T2134 T2132 punct ),1F
R1406 T2135 T2121 punct .,was
R1407 T2137 T2138 aux To,assess
R1408 T2138 T2140 advcl assess,used
R1409 T2139 T2138 advmod further,assess
R1410 T2141 T2142 det the,localization
R1411 T2142 T2138 dobj localization,assess
R1412 T2143 T2142 amod nuclear,localization
R1413 T2144 T2140 punct ", ",used
R1414 T2145 T2140 nsubjpass TRIP13,used
R1415 T2146 T2140 auxpass was,used
R1416 T2147 T2148 aux to,probe
R1417 T2148 T2140 advcl probe,used
R1418 T2149 T2150 amod meiotic,chromosomes
R1419 T2150 T2148 dobj chromosomes,probe
R1420 T2151 T2150 acl prepared,chromosomes
R1421 T2152 T2151 prep by,prepared
R1422 T2153 T2154 compound surface,spreading
R1423 T2154 T2152 pobj spreading,by
R1424 T2155 T2154 prep of,spreading
R1425 T2156 T2157 compound spermatocyte,nuclei
R1426 T2157 T2155 pobj nuclei,of
R1427 T2158 T2140 punct .,used
R1428 T2160 T2161 prep In,was
R1429 T2162 T2163 amod wild,type
R1430 T2163 T2160 pobj type,In
R1431 T2164 T2161 punct ", ",was
R1432 T2165 T2161 expl there,was
R1433 T2166 T2167 amod diffuse,staining
R1434 T2167 T2161 attr staining,was
R1435 T2168 T2167 amod nuclear,staining
R1436 T2169 T2167 punct ", ",staining
R1437 T2170 T2167 cc and,staining
R1438 T2171 T2172 det no,evidence
R1439 T2172 T2167 conj evidence,staining
R1440 T2173 T2172 prep of,evidence
R1441 T2174 T2173 pobj concentration,of
R1442 T2175 T2174 prep on,concentration
R1443 T2176 T2177 compound SC,cores
R1444 T2177 T2175 pobj cores,on
R1445 T2178 T2174 punct (,concentration
R1446 T2179 T2174 acl marked,concentration
R1447 T2180 T2179 agent by,marked
R1448 T2181 T2182 det the,SYCP3
R1449 T2182 T2180 pobj SYCP3,by
R1450 T2183 T2184 amod axial,element
R1451 T2184 T2185 compound element,protein
R1452 T2185 T2182 compound protein,SYCP3
R1453 T2186 T2172 punct ),evidence
R1454 T2187 T2172 prep at,evidence
R1455 T2188 T2189 det any,substage
R1456 T2189 T2187 pobj substage,at
R1457 T2190 T2189 amod meiotic,substage
R1458 T2191 T2192 punct (,1G
R1459 T2192 T2161 parataxis 1G,was
R1460 T2193 T2192 compound Figure,1G
R1461 T2194 T2192 punct ),1G
R1462 T2195 T2161 punct .,was
R1463 T2197 T2198 compound TRIP13,signal
R1464 T2198 T2199 nsubj signal,was
R1465 T2200 T2201 advmod noticeably,absent
R1466 T2201 T2199 acomp absent,was
R1467 T2202 T2199 prep in,was
R1468 T2203 T2204 nmod mutant,nuclei
R1469 T2204 T2202 pobj nuclei,in
R1470 T2205 T2204 amod meiotic,nuclei
R1471 T2206 T2199 punct .,was

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1597 17-26 CL:0000586 denotes germ cell
T1598 42-48 PR:000016672 denotes TRIP13
T1599 52-61 GO:0010467 denotes expressed
T1600 86-96 GO:0010467 denotes expression
T1601 149-155 UBERON:0000473 denotes testis
T1602 188-194 PR:000016672 denotes TRIP13
T1603 214-221 NCBITaxon:9031 denotes chicken
T1604 234-242 GO:0042571 denotes antibody
T1605 316-322 UBERON:0000473 denotes testes
T1606 335-348 CL:0000020 denotes spermatogonia
T1607 353-362 GO:0000237 denotes leptotene
T1608 363-376 CL:0000017 denotes spermatocytes
T1609 390-398 GO:0000238 denotes Zygotene
T1610 399-408 GO:0000239 denotes pachytene
T1611 409-422 CL:0000017 denotes spermatocytes
T1612 491-500 GO:0000239 denotes pachytene
T1613 501-514 CL:0000017 denotes spermatocytes
T1614 516-522 PR:000016672 denotes TRIP13
T1615 538-545 GO:0005634 denotes nuclear
T1616 587-593 GO:0005634 denotes nuclei
T1617 604-624 UBERON:0001343 denotes seminiferous tubules
T1618 660-667 GO:0005634 denotes nuclear
T1619 682-688 PR:000016672 denotes TRIP13
T1620 707-714 GO:0007126 denotes meiotic
T1621 760-772 CL:0000017 denotes spermatocyte
T1622 773-779 GO:0005634 denotes nuclei
T1623 813-820 GO:0005634 denotes nuclear
T1624 867-869 GO:0000795 denotes SC
T1625 891-904 GO:0000800 denotes axial element
T1626 913-918 PR:000015865 denotes SYCP3
T1627 927-943 GO:0098762 denotes meiotic substage
T1628 957-963 PR:000016672 denotes TRIP13
T1629 1003-1010 GO:0007126 denotes meiotic
T1630 1011-1017 GO:0005634 denotes nuclei

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1678 17-26 CL:0000586 denotes germ cell
T1679 22-26 CL_GO_EXT:cell denotes cell
T1680 42-48 PR_EXT:000016672 denotes TRIP13
T1681 52-61 GO:0010467 denotes expressed
T1682 86-96 GO:0010467 denotes expression
T1683 104-110 SO_EXT:sequence_altered_entity denotes mutant
T1684 149-155 UBERON:0000473 denotes testis
T1685 188-194 PR_EXT:000016672 denotes TRIP13
T1686 214-221 NCBITaxon:9031 denotes chicken
T1687 226-233 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T1688 234-242 GO:0042571 denotes antibody
T1689 291-298 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T1690 299-304 CL_GO_EXT:cell denotes cells
T1691 316-322 UBERON:0000473 denotes testes
T1692 335-348 CL:0000020 denotes spermatogonia
T1693 353-362 GO:0000237 denotes leptotene
T1694 363-376 CL:0000017 denotes spermatocytes
T1695 390-398 GO:0000238 denotes Zygotene
T1696 399-408 GO:0000239 denotes pachytene
T1697 409-422 CL:0000017 denotes spermatocytes
T1698 491-500 GO:0000239 denotes pachytene
T1699 501-514 CL:0000017 denotes spermatocytes
T1700 516-522 PR_EXT:000016672 denotes TRIP13
T1701 538-545 GO:0005634 denotes nuclear
T1702 546-555 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T1703 587-593 GO:0005634 denotes nuclei
T1704 597-603 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T1705 604-624 UBERON:0001343 denotes seminiferous tubules
T1706 660-667 GO:0005634 denotes nuclear
T1707 668-680 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1708 682-688 PR_EXT:000016672 denotes TRIP13
T1709 707-714 GO:0007126 denotes meiotic
T1710 715-726 GO_SO_EXT:chromosome denotes chromosomes
T1711 760-772 CL:0000017 denotes spermatocyte
T1712 773-779 GO:0005634 denotes nuclei
T1713 784-793 SO_EXT:wild_type_entity_or_quality denotes wild type
T1714 813-820 GO:0005634 denotes nuclear
T1715 867-869 GO:0000795 denotes SC
T1716 877-883 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes marked
T1717 891-904 GO:0000800 denotes axial element
T1718 905-912 CHEBI_PR_EXT:protein denotes protein
T1719 913-918 PR_EXT:000015865 denotes SYCP3
T1720 927-943 GO:0098762 denotes meiotic substage
T1721 957-963 PR_EXT:000016672 denotes TRIP13
T1722 996-1002 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T1723 1003-1010 GO:0007126 denotes meiotic
T1724 1011-1017 GO:0005634 denotes nuclei