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PMC:1941754 / 10382-11172 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10698 0-13 JJ denotes Developmental
T10699 14-24 NNS denotes Phenotypes
T10700 25-27 IN denotes of
T10701 28-34 NN denotes Trip13
T10702 35-41 NN denotes Mutant
T10703 42-46 NNS denotes Mice
T10704 46-82 sentence denotes (A) Shown are 21-d-old littermates.
T10705 47-48 -LRB- denotes (
T10706 48-49 LS denotes A
T10707 57-60 VBP denotes are
T10708 49-50 -RRB- denotes )
T10709 51-56 VBN denotes Shown
T10710 61-63 CD denotes 21
T10711 64-65 NN denotes d
T10712 63-64 HYPH denotes -
T10713 66-69 JJ denotes old
T10714 65-66 HYPH denotes -
T10715 70-81 NNS denotes littermates
T10716 81-82 . denotes .
T10717 82-152 sentence denotes Note the shortened tail in the mutant, but overall similar body size.
T10718 83-87 VB denotes Note
T10719 88-91 DT denotes the
T10720 102-106 NN denotes tail
T10721 92-101 VBN denotes shortened
T10722 107-109 IN denotes in
T10723 110-113 DT denotes the
T10724 114-120 NN denotes mutant
T10725 120-122 , denotes ,
T10726 122-125 CC denotes but
T10727 126-133 JJ denotes overall
T10728 134-141 JJ denotes similar
T10729 147-151 NN denotes size
T10730 142-146 NN denotes body
T10731 151-152 . denotes .
T10732 152-188 sentence denotes (B) Shown are 23-d-old littermates.
T10733 153-154 -LRB- denotes (
T10734 154-155 LS denotes B
T10735 163-166 VBP denotes are
T10736 155-156 -RRB- denotes )
T10737 157-162 VBN denotes Shown
T10738 167-169 CD denotes 23
T10739 170-171 NN denotes d
T10740 169-170 HYPH denotes -
T10741 172-175 JJ denotes old
T10742 171-172 HYPH denotes -
T10743 176-187 NNS denotes littermates
T10744 187-188 . denotes .
T10745 188-278 sentence denotes The mutant is smaller in this case, but the tail is not as truncated as the mouse in (A).
T10746 189-192 DT denotes The
T10747 193-199 NN denotes mutant
T10748 200-202 VBZ denotes is
T10749 203-210 JJR denotes smaller
T10750 211-213 IN denotes in
T10751 214-218 DT denotes this
T10752 219-223 NN denotes case
T10753 223-225 , denotes ,
T10754 225-228 CC denotes but
T10755 229-232 DT denotes the
T10756 233-237 NN denotes tail
T10757 238-240 VBZ denotes is
T10758 241-244 RB denotes not
T10759 245-247 RB denotes as
T10760 248-257 JJ denotes truncated
T10761 258-260 IN denotes as
T10762 261-264 DT denotes the
T10763 265-270 NN denotes mouse
T10764 271-273 IN denotes in
T10765 274-275 -LRB- denotes (
T10766 275-276 NN denotes A
T10767 276-277 -RRB- denotes )
T10768 277-278 . denotes .
T10769 278-340 sentence denotes (C) Wild-type (WT) and homozygous Trip13 mutant (MUT) testes.
T10770 279-280 -LRB- denotes (
T10771 280-281 LS denotes C
T10772 333-339 NNS denotes testes
T10773 281-282 -RRB- denotes )
T10774 283-287 JJ denotes Wild
T10775 288-292 NN denotes type
T10776 287-288 HYPH denotes -
T10777 293-294 -LRB- denotes (
T10778 294-296 NN denotes WT
T10779 296-297 -RRB- denotes )
T10780 298-301 CC denotes and
T10781 302-312 JJ denotes homozygous
T10782 320-326 NN denotes mutant
T10783 313-319 NN denotes Trip13
T10784 327-328 -LRB- denotes (
T10785 328-331 NN denotes MUT
T10786 331-332 -RRB- denotes )
T10787 339-340 . denotes .
T10788 340-461 sentence denotes (D) and (E) are cross sections through 17.5-d-old heterozygous (“WT”) and homozygous mutant Trip13 testes, respectively.
T10789 341-342 -LRB- denotes (
T10790 342-343 NN denotes D
T10791 353-356 VBP denotes are
T10792 343-344 -RRB- denotes )
T10793 345-348 CC denotes and
T10794 349-350 -LRB- denotes (
T10795 350-351 NN denotes E
T10796 351-352 -RRB- denotes )
T10797 357-362 NN denotes cross
T10798 363-371 NNS denotes sections
T10799 372-379 IN denotes through
T10800 380-384 CD denotes 17.5
T10801 385-386 NN denotes d
T10802 384-385 HYPH denotes -
T10803 387-390 JJ denotes old
T10804 386-387 HYPH denotes -
T10805 440-446 NNS denotes testes
T10806 391-403 JJ denotes heterozygous
T10807 426-432 NN denotes mutant
T10808 404-405 -LRB- denotes (
T10809 406-408 NN denotes WT
T10810 405-406 `` denotes “
T10811 408-409 '' denotes ”
T10812 409-410 -RRB- denotes )
T10813 411-414 CC denotes and
T10814 415-425 JJ denotes homozygous
T10815 433-439 NN denotes Trip13
T10816 446-448 , denotes ,
T10817 448-460 RB denotes respectively
T10818 460-461 . denotes .
T10819 461-674 sentence denotes Whereas the tubules in WT show coordinated spermatogenesis with pachytene spermatocytes present in all tubules (proximal to the lumen), developmental progression in the mutant is not synchronized between tubules.
T10820 462-469 IN denotes Whereas
T10821 488-492 VBP denotes show
T10822 470-473 DT denotes the
T10823 474-481 NNS denotes tubules
T10824 482-484 IN denotes in
T10825 485-487 NN denotes WT
T10826 645-657 VBN denotes synchronized
T10827 493-504 VBN denotes coordinated
T10828 505-520 NN denotes spermatogenesis
T10829 521-525 IN denotes with
T10830 526-535 NN denotes pachytene
T10831 536-549 NNS denotes spermatocytes
T10832 550-557 JJ denotes present
T10833 558-560 IN denotes in
T10834 561-564 DT denotes all
T10835 565-572 NNS denotes tubules
T10836 573-574 -LRB- denotes (
T10837 574-582 JJ denotes proximal
T10838 583-585 IN denotes to
T10839 586-589 DT denotes the
T10840 590-595 NN denotes lumen
T10841 595-596 -RRB- denotes )
T10842 596-598 , denotes ,
T10843 598-611 JJ denotes developmental
T10844 612-623 NN denotes progression
T10845 624-626 IN denotes in
T10846 627-630 DT denotes the
T10847 631-637 NN denotes mutant
T10848 638-640 VBZ denotes is
T10849 641-644 RB denotes not
T10850 658-665 IN denotes between
T10851 666-673 NNS denotes tubules
T10852 673-674 . denotes .
T10853 674-790 sentence denotes Some tubules have no pachytene spermatocyes (asterisks), while in others, development is somewhat disorganized (#).
T10854 675-679 DT denotes Some
T10855 680-687 NNS denotes tubules
T10856 688-692 VBP denotes have
T10857 693-695 DT denotes no
T10858 706-718 NNS denotes spermatocyes
T10859 696-705 NN denotes pachytene
T10860 719-720 -LRB- denotes (
T10861 720-729 NNS denotes asterisks
T10862 729-730 -RRB- denotes )
T10863 730-732 , denotes ,
T10864 732-737 IN denotes while
T10865 761-763 VBZ denotes is
T10866 738-740 IN denotes in
T10867 741-747 NNS denotes others
T10868 747-749 , denotes ,
T10869 749-760 NN denotes development
T10870 764-772 RB denotes somewhat
T10871 773-785 JJ denotes disorganized
T10872 786-787 -LRB- denotes (
T10873 787-788 SYM denotes #
T10874 788-789 -RRB- denotes )
T10875 789-790 . denotes .
R7276 T10698 T10699 amod Developmental,Phenotypes
R7277 T10700 T10699 prep of,Phenotypes
R7278 T10701 T10702 compound Trip13,Mutant
R7279 T10702 T10703 compound Mutant,Mice
R7280 T10703 T10700 pobj Mice,of
R7281 T10705 T10706 punct (,A
R7282 T10706 T10707 meta A,are
R7283 T10708 T10706 punct ),A
R7284 T10709 T10707 dep Shown,are
R7285 T10710 T10711 nummod 21,d
R7286 T10711 T10713 npadvmod d,old
R7287 T10712 T10711 punct -,d
R7288 T10713 T10715 amod old,littermates
R7289 T10714 T10713 punct -,old
R7290 T10715 T10707 nsubj littermates,are
R7291 T10716 T10707 punct .,are
R7292 T10719 T10720 det the,tail
R7293 T10720 T10718 dobj tail,Note
R7294 T10721 T10720 amod shortened,tail
R7295 T10722 T10720 prep in,tail
R7296 T10723 T10724 det the,mutant
R7297 T10724 T10722 pobj mutant,in
R7298 T10725 T10720 punct ", ",tail
R7299 T10726 T10720 cc but,tail
R7300 T10727 T10728 amod overall,similar
R7301 T10728 T10729 amod similar,size
R7302 T10729 T10720 conj size,tail
R7303 T10730 T10729 compound body,size
R7304 T10731 T10718 punct .,Note
R7305 T10733 T10734 punct (,B
R7306 T10734 T10735 meta B,are
R7307 T10736 T10734 punct ),B
R7308 T10737 T10735 dep Shown,are
R7309 T10738 T10739 nummod 23,d
R7310 T10739 T10741 npadvmod d,old
R7311 T10740 T10739 punct -,d
R7312 T10741 T10743 amod old,littermates
R7313 T10742 T10741 punct -,old
R7314 T10743 T10735 nsubj littermates,are
R7315 T10744 T10735 punct .,are
R7316 T10746 T10747 det The,mutant
R7317 T10747 T10748 nsubj mutant,is
R7318 T10749 T10748 acomp smaller,is
R7319 T10750 T10748 prep in,is
R7320 T10751 T10752 det this,case
R7321 T10752 T10750 pobj case,in
R7322 T10753 T10748 punct ", ",is
R7323 T10754 T10748 cc but,is
R7324 T10755 T10756 det the,tail
R7325 T10756 T10757 nsubj tail,is
R7326 T10757 T10748 conj is,is
R7327 T10758 T10757 neg not,is
R7328 T10759 T10760 advmod as,truncated
R7329 T10760 T10757 acomp truncated,is
R7330 T10761 T10760 prep as,truncated
R7331 T10762 T10763 det the,mouse
R7332 T10763 T10761 pobj mouse,as
R7333 T10764 T10763 prep in,mouse
R7334 T10765 T10766 punct (,A
R7335 T10766 T10764 pobj A,in
R7336 T10767 T10766 punct ),A
R7337 T10768 T10757 punct .,is
R7338 T10770 T10771 punct (,C
R7339 T10771 T10772 meta C,testes
R7340 T10773 T10771 punct ),C
R7341 T10774 T10775 amod Wild,type
R7342 T10775 T10772 nmod type,testes
R7343 T10776 T10775 punct -,type
R7344 T10777 T10775 punct (,type
R7345 T10778 T10775 appos WT,type
R7346 T10779 T10775 punct ),type
R7347 T10780 T10775 cc and,type
R7348 T10781 T10782 amod homozygous,mutant
R7349 T10782 T10775 conj mutant,type
R7350 T10783 T10782 compound Trip13,mutant
R7351 T10784 T10782 punct (,mutant
R7352 T10785 T10782 appos MUT,mutant
R7353 T10786 T10772 punct ),testes
R7354 T10787 T10772 punct .,testes
R7355 T10789 T10790 punct (,D
R7356 T10790 T10791 nsubj D,are
R7357 T10792 T10790 punct ),D
R7358 T10793 T10790 cc and,D
R7359 T10794 T10795 punct (,E
R7360 T10795 T10790 conj E,D
R7361 T10796 T10795 punct ),E
R7362 T10797 T10798 compound cross,sections
R7363 T10798 T10791 attr sections,are
R7364 T10799 T10798 prep through,sections
R7365 T10800 T10801 nummod 17.5,d
R7366 T10801 T10803 npadvmod d,old
R7367 T10802 T10801 punct -,d
R7368 T10803 T10805 amod old,testes
R7369 T10804 T10803 punct -,old
R7370 T10805 T10799 pobj testes,through
R7371 T10806 T10807 amod heterozygous,mutant
R7372 T10807 T10805 compound mutant,testes
R7373 T10808 T10809 punct (,WT
R7374 T10809 T10806 parataxis WT,heterozygous
R7375 T10810 T10809 punct “,WT
R7376 T10811 T10809 punct ”,WT
R7377 T10812 T10809 punct ),WT
R7378 T10813 T10806 cc and,heterozygous
R7379 T10814 T10806 conj homozygous,heterozygous
R7380 T10815 T10805 compound Trip13,testes
R7381 T10816 T10791 punct ", ",are
R7382 T10817 T10791 advmod respectively,are
R7383 T10818 T10791 punct .,are
R7384 T10820 T10821 mark Whereas,show
R7385 T10821 T10826 advcl show,synchronized
R7386 T10822 T10823 det the,tubules
R7387 T10823 T10821 nsubj tubules,show
R7388 T10824 T10823 prep in,tubules
R7389 T10825 T10824 pobj WT,in
R7390 T10827 T10828 amod coordinated,spermatogenesis
R7391 T10828 T10821 dobj spermatogenesis,show
R7392 T10829 T10828 prep with,spermatogenesis
R7393 T10830 T10831 compound pachytene,spermatocytes
R7394 T10831 T10829 pobj spermatocytes,with
R7395 T10832 T10831 relcl present,spermatocytes
R7396 T10833 T10832 prep in,present
R7397 T10834 T10835 det all,tubules
R7398 T10835 T10833 pobj tubules,in
R7399 T10836 T10835 punct (,tubules
R7400 T10837 T10835 amod proximal,tubules
R7401 T10838 T10837 prep to,proximal
R7402 T10839 T10840 det the,lumen
R7403 T10840 T10838 pobj lumen,to
R7404 T10841 T10826 punct ),synchronized
R7405 T10842 T10826 punct ", ",synchronized
R7406 T10843 T10844 amod developmental,progression
R7407 T10844 T10826 nsubjpass progression,synchronized
R7408 T10845 T10844 prep in,progression
R7409 T10846 T10847 det the,mutant
R7410 T10847 T10845 pobj mutant,in
R7411 T10848 T10826 auxpass is,synchronized
R7412 T10849 T10826 neg not,synchronized
R7413 T10850 T10826 prep between,synchronized
R7414 T10851 T10850 pobj tubules,between
R7415 T10852 T10826 punct .,synchronized
R7416 T10854 T10855 det Some,tubules
R7417 T10855 T10856 nsubj tubules,have
R7418 T10857 T10858 det no,spermatocyes
R7419 T10858 T10856 dobj spermatocyes,have
R7420 T10859 T10858 compound pachytene,spermatocyes
R7421 T10860 T10861 punct (,asterisks
R7422 T10861 T10858 parataxis asterisks,spermatocyes
R7423 T10862 T10861 punct ),asterisks
R7424 T10863 T10856 punct ", ",have
R7425 T10864 T10865 mark while,is
R7426 T10865 T10856 advcl is,have
R7427 T10866 T10865 prep in,is
R7428 T10867 T10866 pobj others,in
R7429 T10868 T10865 punct ", ",is
R7430 T10869 T10865 nsubj development,is
R7431 T10870 T10871 advmod somewhat,disorganized
R7432 T10871 T10865 acomp disorganized,is
R7433 T10872 T10873 punct (,#
R7434 T10873 T10865 punct #,is
R7435 T10874 T10873 punct ),#
R7436 T10875 T10856 punct .,have

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10648 28-34 PR:000016672 denotes Trip13
T10649 42-46 NCBITaxon:10088 denotes Mice
T10650 102-106 UBERON:0002415 denotes tail
T10651 233-237 UBERON:0002415 denotes tail
T10652 265-270 NCBITaxon:10088 denotes mouse
T10653 313-319 PR:000016672 denotes Trip13
T10654 333-339 UBERON:0000473 denotes testes
T10655 433-439 PR:000016672 denotes Trip13
T10656 440-446 UBERON:0000473 denotes testes
T10657 474-481 UBERON:0000025 denotes tubules
T10658 505-520 GO:0007283 denotes spermatogenesis
T10659 526-535 GO:0000239 denotes pachytene
T10660 536-549 CL:0000017 denotes spermatocytes
T10661 565-572 UBERON:0000025 denotes tubules
T10662 666-673 UBERON:0000025 denotes tubules
T10663 680-687 UBERON:0000025 denotes tubules
T10664 696-705 GO:0000239 denotes pachytene
T10665 706-718 CL:0000017 denotes spermatocyes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10666 28-34 PR_EXT:000016672 denotes Trip13
T10667 35-41 SO_EXT:sequence_altered_entity_or_alteration_process denotes Mutant
T10668 42-46 NCBITaxon:10088 denotes Mice
T10669 102-106 UBERON:0002415 denotes tail
T10670 114-120 SO_EXT:sequence_altered_entity denotes mutant
T10671 142-146 UBERON_EXT:body denotes body
T10672 193-199 SO_EXT:sequence_altered_entity denotes mutant
T10673 233-237 UBERON:0002415 denotes tail
T10674 248-257 SO_EXT:sequence_truncation_process denotes truncated
T10675 265-270 NCBITaxon:10088 denotes mouse
T10676 283-292 SO_EXT:wild_type_entity_or_quality denotes Wild-type
T10677 294-296 SO_EXT:wild_type_entity_or_quality denotes WT
T10678 313-319 PR_EXT:000016672 denotes Trip13
T10679 320-326 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T10680 328-331 SO_EXT:sequence_altered_entity_or_alteration_process denotes MUT
T10681 333-339 UBERON:0000473 denotes testes
T10682 406-408 SO_EXT:wild_type_entity_or_quality denotes WT
T10683 426-432 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T10684 433-439 PR_EXT:000016672 denotes Trip13
T10685 440-446 UBERON:0000473 denotes testes
T10686 474-481 UBERON:0000025 denotes tubules
T10687 485-487 SO_EXT:wild_type_entity_or_quality denotes WT
T10688 505-520 GO:0007283 denotes spermatogenesis
T10689 526-535 GO:0000239 denotes pachytene
T10690 536-549 CL:0000017 denotes spermatocytes
T10691 565-572 UBERON:0000025 denotes tubules
T10692 590-595 GO_UBERON_EXT:lumen denotes lumen
T10693 631-637 SO_EXT:sequence_altered_entity denotes mutant
T10694 666-673 UBERON:0000025 denotes tubules
T10695 680-687 UBERON:0000025 denotes tubules
T10696 696-705 GO:0000239 denotes pachytene
T10697 706-718 CL:0000017 denotes spermatocyes