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PMC:1920263 / 699-1003 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T32 21-24 Protein denotes A3G
T33 25-33 Entity denotes promoter
T34 42-51 Positive_regulation denotes inducible
T35 102-112 Gene_expression denotes expression
T36 185-195 Protein denotes luciferase
R22 T33 T34 themeOf promoter,inducible
R23 T33 T32 partOf promoter,A3G

GO-CC

Id Subject Object Predicate Lexical cue
T555 10-15 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T433 3-4 . denotes .
T434 5-7 IN denotes In
T435 8-9 NNP denotes T
T436 10-15 NNS denotes cells
T437 15-16 , denotes ,
T438 17-20 DT denotes the
T439 21-24 NNP denotes A3G
T440 25-33 NN denotes promoter
T441 34-37 VBD denotes was
T442 38-41 RB denotes not
T443 42-51 JJ denotes inducible
T444 52-54 IN denotes by
T445 55-64 JJ denotes mitogenic
T446 65-76 NN denotes stimulation
T447 76-77 , denotes ,
T448 78-88 NN denotes interferon
T449 89-98 NN denotes treatment
T450 99-101 CC denotes or
T451 102-112 NN denotes expression
T452 113-115 IN denotes of
T453 116-121 JJ denotes HIV-1
T454 122-130 NNS denotes proteins
T455 130-131 . denotes .
T456 132-137 VBG denotes Using
T457 138-139 DT denotes a
T458 140-146 NN denotes series
T459 147-149 IN denotes of
T460 150-151 CD denotes 5
T461 151-152 CD denotes ′
T462 153-161 NN denotes deletion
T463 162-170 NN denotes promoter
T464 171-181 NNS denotes constructs
T465 182-184 IN denotes in
T466 185-195 NN denotes luciferase
T467 196-204 NN denotes reporter
T468 205-211 NNS denotes assays
T469 211-212 , denotes ,
T470 213-215 PRP denotes we
T471 216-226 VBD denotes identified
T472 227-228 DT denotes a
T473 229-232 CD denotes 180
T474 233-235 NN denotes bp
T475 236-242 NN denotes region
T476 243-247 WDT denotes that
T477 248-251 VBD denotes was
T478 252-262 JJ denotes sufficient
T479 263-266 IN denotes for
T480 267-271 JJ denotes full
T481 272-280 NN denotes promoter
T482 281-289 NN denotes activity
T483 289-290 . denotes .
R382 T434 T441 prep In,was
R383 T435 T436 compound T,cells
R384 T436 T434 pobj cells,In
R385 T437 T441 punct ",",was
R386 T438 T440 det the,promoter
R387 T439 T440 compound A3G,promoter
R388 T440 T441 nsubj promoter,was
R389 T441 T441 ROOT was,was
R390 T442 T441 neg not,was
R391 T443 T441 attr inducible,was
R392 T444 T443 prep by,inducible
R393 T445 T446 amod mitogenic,stimulation
R394 T446 T444 pobj stimulation,by
R395 T447 T446 punct ",",stimulation
R396 T448 T449 compound interferon,treatment
R397 T449 T446 conj treatment,stimulation
R398 T450 T449 cc or,treatment
R399 T451 T449 conj expression,treatment
R400 T452 T451 prep of,expression
R403 T455 T441 punct .,was
R404 T456 T471 advcl Using,identified
R405 T457 T458 det a,series
R406 T458 T456 dobj series,Using
R407 T459 T458 prep of,series
R408 T460 T464 nummod 5,constructs
R409 T461 T464 nummod ′,constructs
R410 T462 T464 compound deletion,constructs
R411 T463 T464 compound promoter,constructs
R412 T464 T459 pobj constructs,of
R413 T465 T464 prep in,constructs
R414 T466 T468 compound luciferase,assays
R415 T467 T468 compound reporter,assays
R416 T468 T465 pobj assays,in
R417 T469 T471 punct ",",identified
R418 T470 T471 nsubj we,identified
R419 T471 T471 ROOT identified,identified
R420 T472 T475 det a,region
R421 T473 T475 nummod 180,region
R422 T474 T475 compound bp,region
R423 T475 T471 dobj region,identified
R424 T476 T477 nsubj that,was
R425 T477 T475 relcl was,region
R426 T478 T477 acomp sufficient,was
R427 T479 T478 prep for,sufficient
R428 T480 T482 amod full,activity
R429 T481 T482 compound promoter,activity
R430 T482 T479 pobj activity,for
R431 T483 T471 punct .,identified
R401 T453 T454 amod HIV-1,proteins
R402 T454 T452 pobj proteins,of

sentences

Id Subject Object Predicate Lexical cue
T69 5-131 Sentence denotes In T cells, the A3G promoter was not inducible by mitogenic stimulation, interferon treatment or expression of HIV-1 proteins.
T70 132-290 Sentence denotes Using a series of 5′ deletion promoter constructs in luciferase reporter assays, we identified a 180 bp region that was sufficient for full promoter activity.
T7 5-131 Sentence denotes In T cells, the A3G promoter was not inducible by mitogenic stimulation, interferon treatment or expression of HIV-1 proteins.
T8 132-290 Sentence denotes Using a series of 5′ deletion promoter constructs in luciferase reporter assays, we identified a 180 bp region that was sufficient for full promoter activity.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T183 5-7 IN denotes In
T184 8-9 NN denotes T
T185 10-15 NN denotes cells
T186 15-16 -COMMA- denotes ,
T187 17-20 DT denotes the
T188 21-24 NN denotes A3G
T189 25-33 NN denotes promoter
T190 34-37 VB denotes was
T191 38-41 RB denotes not
T192 42-51 JJ denotes inducible
T193 52-54 IN denotes by
T194 55-64 JJ denotes mitogenic
T195 65-76 NN denotes stimulation
T196 76-77 -COMMA- denotes ,
T197 78-88 NN denotes interferon
T198 89-98 NN denotes treatment
T199 99-101 CC denotes or
T200 102-112 NN denotes expression
T201 113-115 IN denotes of
T202 116-121 NN denotes HIV-1
T203 122-130 NN denotes proteins
T204 132-137 VB denotes Using
T205 138-139 DT denotes a
T206 140-146 NN denotes series
T207 147-149 IN denotes of
T208 150-152 NN denotes 5′
T209 153-161 NN denotes deletion
T210 162-170 NN denotes promoter
T211 171-181 NN denotes constructs
T212 182-184 IN denotes in
T213 185-195 NN denotes luciferase
T214 196-204 NN denotes reporter
T215 205-211 NN denotes assays
T216 211-212 -COMMA- denotes ,
T217 213-215 PRP denotes we
T218 216-226 VB denotes identified
T219 227-228 DT denotes a
T220 229-235 NN denotes 180 bp
T221 236-242 NN denotes region
T222 243-247 WDT denotes that
T223 248-251 VB denotes was
T224 252-262 JJ denotes sufficient
T225 263-266 IN denotes for
T226 267-271 JJ denotes full
T227 272-280 NN denotes promoter
T228 281-289 NN denotes activity
R154 T185 T183 arg2Of cells,In
R155 T185 T184 arg1Of cells,T
R156 T189 T187 arg1Of promoter,the
R157 T189 T188 arg1Of promoter,A3G
R158 T189 T190 arg1Of promoter,was
R159 T189 T192 arg1Of promoter,inducible
R160 T190 T183 arg1Of was,In
R161 T190 T186 arg1Of was,","
R162 T190 T191 arg1Of was,not
R163 T192 T190 arg2Of inducible,was
R164 T192 T193 arg1Of inducible,by
R165 T195 T194 arg1Of stimulation,mitogenic
R166 T195 T196 arg1Of stimulation,","
R167 T196 T199 arg1Of ",",or
R168 T198 T196 arg2Of treatment,","
R169 T198 T197 arg1Of treatment,interferon
R170 T199 T193 arg2Of or,by
R171 T199 T201 arg1Of or,of
R172 T200 T199 arg2Of expression,or
R173 T203 T201 arg2Of proteins,of
R174 T203 T202 arg1Of proteins,HIV-1
R175 T206 T204 arg2Of series,Using
R176 T206 T205 arg1Of series,a
R177 T206 T207 arg1Of series,of
R178 T206 T212 arg1Of series,in
R179 T211 T207 arg2Of constructs,of
R180 T211 T208 arg1Of constructs,5′
R181 T211 T209 arg1Of constructs,deletion
R182 T211 T210 arg1Of constructs,promoter
R183 T215 T212 arg2Of assays,in
R184 T215 T213 arg1Of assays,luciferase
R185 T215 T214 arg1Of assays,reporter
R186 T217 T204 arg1Of we,Using
R187 T217 T218 arg1Of we,identified
R188 T218 T204 modOf identified,Using
R189 T218 T216 arg1Of identified,","
R190 T221 T218 arg2Of region,identified
R191 T221 T219 arg1Of region,a
R192 T221 T220 arg1Of region,180 bp
R193 T221 T222 arg1Of region,that
R194 T221 T223 arg1Of region,was
R195 T221 T224 arg1Of region,sufficient
R196 T224 T223 arg2Of sufficient,was
R197 T224 T225 arg1Of sufficient,for
R198 T228 T225 arg2Of activity,for
R199 T228 T226 arg1Of activity,full
R200 T228 T227 arg1Of activity,promoter

events-check-again

Id Subject Object Predicate Lexical cue Negation
T669 21-24 Protein denotes A3G
T670 25-33 Entity denotes promoter
T671 42-51 Positive_regulation denotes inducible true
T672 185-195 Protein denotes luciferase
R553 T670 T671 themeOf promoter,inducible
R554 T670 T669 partOf promoter,A3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T691 21-33 Protein denotes A3G promoter
T692 78-88 Protein denotes interferon
T693 185-195 Protein denotes luciferase

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T55 21-24 Protein denotes A3G
T56 25-33 Entity denotes promoter
T57 42-51 Positive_regulation denotes inducible true
T58 185-195 Protein denotes luciferase
R35 T56 T57 themeOf promoter,inducible
R36 T56 T55 partOf promoter,A3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T304 21-24 Q9HC16 denotes A3G
T305 185-195 P08659 denotes luciferase