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PMC:1920263 / 43-281 JSONTXT

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test2

Id Subject Object Predicate Lexical cue Negation
T26 11-19 Protein denotes APOBEC3G
T27 36-44 Protein denotes APOBEC3G true
T28 46-49 Protein denotes A3G
T29 128-137 Gene_expression denotes expressed
R20 T27 T29 themeOf APOBEC3G,expressed
R21 T28 T27 equivalentTo A3G,APOBEC3G

UBERON-AE

Id Subject Object Predicate Lexical cue
T42 152-157 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T325 1-4 DT denotes the
T326 5-10 JJ denotes human
T327 11-19 NNP denotes APOBEC3G
T328 20-24 NN denotes gene
T329 36-44 NNP denotes APOBEC3G
T330 45-46 -LRB- denotes (
T331 46-49 NNP denotes A3G
T332 49-50 -RRB- denotes )
T333 50-51 , denotes ,
T334 52-53 DT denotes a
T335 54-60 NN denotes member
T336 61-63 IN denotes of
T337 64-67 DT denotes the
T338 68-76 RB denotes recently
T339 77-87 VBN denotes discovered
T340 88-94 NN denotes family
T341 95-97 IN denotes of
T342 98-103 JJ denotes human
T343 104-112 NN denotes cytidine
T344 113-123 NNS denotes deaminases
T345 123-124 , denotes ,
T346 125-127 VBZ denotes is
T347 128-137 VBN denotes expressed
T348 138-140 IN denotes in
T349 141-151 JJ denotes peripheral
T350 152-157 NN denotes blood
T351 158-169 NNS denotes lymphocytes
T352 170-173 CC denotes and
T353 174-177 VBZ denotes has
T354 178-182 VBN denotes been
T355 183-188 VBN denotes shown
T356 189-191 TO denotes to
T357 192-194 VB denotes be
T358 195-201 JJ denotes active
T359 202-209 IN denotes against
T360 210-215 NNP denotes HIV-1
T361 216-219 CC denotes and
T362 220-225 JJ denotes other
T363 226-238 NNS denotes retroviruses
R273 T325 T328 det the,gene
R274 T326 T328 amod human,gene
R275 T327 T328 compound APOBEC3G,gene
R277 T329 T328 appos APOBEC3G,gene
R278 T330 T331 punct (,A3G
R279 T331 T329 appos A3G,APOBEC3G
R280 T332 T329 punct ),APOBEC3G
R281 T333 T328 punct ",",gene
R282 T334 T335 det a,member
R283 T335 T328 appos member,gene
R284 T336 T335 prep of,member
R285 T337 T340 det the,family
R286 T338 T339 advmod recently,discovered
R287 T339 T340 amod discovered,family
R288 T340 T336 pobj family,of
R289 T341 T340 prep of,family
R290 T342 T344 amod human,deaminases
R291 T343 T344 compound cytidine,deaminases
R292 T344 T341 pobj deaminases,of
R293 T345 T347 punct ",",expressed
R294 T346 T347 auxpass is,expressed
R295 T347 T347 ROOT expressed,expressed
R296 T348 T347 prep in,expressed
R297 T349 T351 amod peripheral,lymphocytes
R298 T350 T351 compound blood,lymphocytes
R299 T351 T348 pobj lymphocytes,in
R300 T352 T347 cc and,expressed
R301 T353 T355 aux has,shown
R302 T354 T355 auxpass been,shown
R303 T355 T347 conj shown,expressed
R304 T356 T357 aux to,be
R305 T357 T355 xcomp be,shown
R306 T358 T357 acomp active,be
R307 T359 T358 prep against,active
R308 T360 T359 pobj HIV-1,against
R309 T361 T360 cc and,HIV-1
R310 T362 T363 amod other,retroviruses
R311 T363 T360 conj retroviruses,HIV-1

sentences

Id Subject Object Predicate Lexical cue
T2 27-35 Sentence denotes Abstract

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T83 1-4 DT denotes the
T84 5-10 JJ denotes human
T85 11-19 NN denotes APOBEC3G
T86 20-24 NN denotes gene
T87 36-44 NN denotes APOBEC3G
T88 45-46 -LRB- denotes (
T89 46-49 NN denotes A3G
T90 49-50 -RRB- denotes )
T91 50-51 -COMMA- denotes ,
T92 52-53 DT denotes a
T93 54-60 NN denotes member
T94 61-63 IN denotes of
T95 64-67 DT denotes the
T96 68-76 RB denotes recently
T97 77-87 VB denotes discovered
T98 88-94 NN denotes family
T99 95-97 IN denotes of
T100 98-103 JJ denotes human
T101 104-112 NN denotes cytidine
T102 113-123 NN denotes deaminases
T103 123-124 -COMMA- denotes ,
T104 125-127 VB denotes is
T105 128-137 VB denotes expressed
T106 138-140 IN denotes in
T107 141-151 JJ denotes peripheral
T108 152-157 NN denotes blood
T109 158-169 NN denotes lymphocytes
T110 170-173 CC denotes and
T111 174-177 VB denotes has
T112 178-182 VB denotes been
T113 183-188 VB denotes shown
T114 189-191 TO denotes to
T115 192-194 VB denotes be
T116 195-201 JJ denotes active
T117 202-209 IN denotes against
T118 210-215 NN denotes HIV-1
T119 216-219 CC denotes and
T120 220-225 JJ denotes other
T121 226-238 NN denotes retroviruses
R49 T86 T83 arg1Of gene,the
R50 T86 T84 arg1Of gene,human
R51 T86 T85 arg1Of gene,APOBEC3G
R52 T87 T88 arg1Of APOBEC3G,(
R53 T87 T91 arg1Of APOBEC3G,","
R54 T87 T104 arg1Of APOBEC3G,is
R55 T87 T105 arg2Of APOBEC3G,expressed
R56 T87 T111 arg1Of APOBEC3G,has
R57 T87 T112 arg1Of APOBEC3G,been
R58 T87 T113 arg2Of APOBEC3G,shown
R59 T87 T115 arg1Of APOBEC3G,be
R60 T87 T116 arg1Of APOBEC3G,active
R61 T89 T88 arg2Of A3G,(
R62 T90 T88 arg3Of ),(
R63 T93 T91 arg2Of member,","
R64 T93 T92 arg1Of member,a
R65 T93 T94 arg1Of member,of
R66 T97 T96 arg1Of discovered,recently
R67 T98 T94 arg2Of family,of
R68 T98 T95 arg1Of family,the
R69 T98 T97 arg1Of family,discovered
R70 T98 T99 arg1Of family,of
R71 T102 T99 arg2Of deaminases,of
R72 T102 T100 arg1Of deaminases,human
R73 T102 T101 arg1Of deaminases,cytidine
R74 T105 T104 arg2Of expressed,is
R75 T105 T106 arg1Of expressed,in
R76 T105 T110 arg1Of expressed,and
R77 T109 T106 arg2Of lymphocytes,in
R78 T109 T107 arg1Of lymphocytes,peripheral
R79 T109 T108 arg1Of lymphocytes,blood
R80 T110 T103 arg1Of and,","
R81 T113 T110 arg2Of shown,and
R82 T113 T111 arg2Of shown,has
R83 T113 T112 arg2Of shown,been
R84 T115 T113 arg3Of be,shown
R85 T115 T114 arg1Of be,to
R86 T116 T115 arg2Of active,be
R87 T116 T117 arg1Of active,against
R88 T118 T119 arg1Of HIV-1,and
R89 T119 T117 arg2Of and,against
R90 T121 T119 arg2Of retroviruses,and
R91 T121 T120 arg1Of retroviruses,other

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T294 36-44 Antecedent denotes APOBEC3G

events-check-again

Id Subject Object Predicate Lexical cue
T662 11-19 Protein denotes APOBEC3G
T663 36-44 Protein denotes APOBEC3G
T664 46-49 Protein denotes A3G
T665 128-137 Gene_expression denotes expressed
R551 T663 T665 themeOf APOBEC3G,expressed
R552 T664 T663 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T680 5-24 Protein denotes human APOBEC3G gene
T684 36-44 Protein denotes APOBEC3G
T685 46-49 Protein denotes A3G
T686 88-123 Protein denotes family of human cytidine deaminases
T687 128-137 Gene_expression denotes expressed
T688 128-137 Gene_expression denotes expressed
R565 T684 T687 themeOf APOBEC3G,expressed
R566 T685 T688 themeOf A3G,expressed

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T48 11-19 Protein denotes APOBEC3G
T49 36-44 Protein denotes APOBEC3G
T50 46-49 Protein denotes A3G
T51 128-137 Gene_expression denotes expressed
R33 T49 T51 themeOf APOBEC3G,expressed
R34 T50 T49 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T297 11-19 Q9HC16 denotes APOBEC3G
T298 36-44 Q9HC16 denotes APOBEC3G
T299 46-49 Q9HC16 denotes A3G