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PMC:1920263 / 426-831 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T31 91-101 Protein denotes Luciferase
T32 294-297 Protein denotes A3G
T33 298-306 Entity denotes promoter
T34 315-324 Positive_regulation denotes inducible
T35 375-385 Gene_expression denotes expression
R22 T33 T34 themeOf promoter,inducible
R23 T33 T32 partOf promoter,A3G

GO-CC

Id Subject Object Predicate Lexical cue
T555 283-288 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T389 14-19 NN denotes start
T390 20-25 NNS denotes sites
T391 26-30 VBD denotes were
T392 31-41 VBN denotes identified
T393 42-44 IN denotes by
T394 45-46 CD denotes 5
T395 46-47 SYM denotes ′
T396 47-48 : denotes -
T397 48-53 JJ denotes rapid
T398 54-67 NN denotes amplification
T399 68-70 IN denotes of
T400 71-75 NNP denotes cDNA
T401 76-80 VBZ denotes ends
T402 81-89 NN denotes analysis
T403 89-90 . denotes .
T404 91-101 NNP denotes Luciferase
T405 102-110 NN denotes reporter
T406 111-117 NNS denotes assays
T407 118-130 VBD denotes demonstrated
T408 131-135 IN denotes that
T409 136-137 DT denotes a
T410 138-142 CD denotes 1025
T411 143-145 NN denotes bp
T412 146-149 CD denotes A3G
T413 150-158 NN denotes promoter
T414 159-167 NN denotes sequence
T415 168-169 -LRB- denotes (
T416 169-173 IN denotes from
T417 174-175 CD denotes −
T418 175-178 CD denotes 959
T419 179-181 TO denotes to
T420 182-185 CD denotes +66
T421 186-194 JJ denotes relative
T422 195-197 TO denotes to
T423 198-201 DT denotes the
T424 202-207 JJ denotes major
T425 208-223 JJ denotes transcriptional
T426 224-229 NN denotes start
T427 230-234 NN denotes site
T428 234-235 -RRB- denotes )
T429 236-245 VBD denotes displayed
T430 246-258 JJ denotes constitutive
T431 259-267 NN denotes promoter
T432 268-276 NN denotes activity
T433 276-277 . denotes .
T434 278-280 IN denotes In
T435 281-282 NNP denotes T
T436 283-288 NNS denotes cells
T437 288-289 , denotes ,
T438 290-293 DT denotes the
T439 294-297 NNP denotes A3G
T440 298-306 NN denotes promoter
T441 307-310 VBD denotes was
T442 311-314 RB denotes not
T443 315-324 JJ denotes inducible
T444 325-327 IN denotes by
T445 328-337 JJ denotes mitogenic
T446 338-349 NN denotes stimulation
T447 349-350 , denotes ,
T448 351-361 NN denotes interferon
T449 362-371 NN denotes treatment
T450 372-374 CC denotes or
T451 375-385 NN denotes expression
T452 386-388 IN denotes of
T453 389-394 JJ denotes HIV-1
T454 395-403 NNS denotes proteins
T455 403-404 . denotes .
R337 T389 T390 compound start,sites
R338 T390 T392 nsubjpass sites,identified
R339 T391 T392 auxpass were,identified
R340 T392 T392 ROOT identified,identified
R341 T393 T392 prep by,identified
R342 T394 T398 nummod 5,amplification
R343 T395 T397 punct ′,rapid
R344 T396 T397 punct -,rapid
R345 T397 T398 amod rapid,amplification
R346 T398 T393 pobj amplification,by
R347 T399 T398 prep of,amplification
R348 T400 T399 pobj cDNA,of
R349 T401 T392 conj ends,identified
R350 T402 T401 dobj analysis,ends
R351 T403 T392 punct .,identified
R352 T404 T406 compound Luciferase,assays
R353 T405 T406 compound reporter,assays
R354 T406 T407 nsubj assays,demonstrated
R355 T407 T407 ROOT demonstrated,demonstrated
R356 T408 T429 mark that,displayed
R357 T409 T414 det a,sequence
R358 T410 T414 nummod 1025,sequence
R359 T411 T414 nmod bp,sequence
R360 T412 T414 nummod A3G,sequence
R361 T413 T414 compound promoter,sequence
R362 T414 T429 nsubj sequence,displayed
R363 T415 T414 punct (,sequence
R364 T416 T414 prep from,sequence
R365 T417 T420 quantmod −,+66
R366 T418 T420 quantmod 959,+66
R367 T419 T420 quantmod to,+66
R368 T420 T416 pobj +66,from
R369 T421 T414 amod relative,sequence
R370 T422 T421 prep to,relative
R371 T423 T427 det the,site
R372 T424 T427 amod major,site
R373 T425 T427 amod transcriptional,site
R374 T426 T427 compound start,site
R375 T427 T422 pobj site,to
R376 T428 T414 punct ),sequence
R377 T429 T407 ccomp displayed,demonstrated
R378 T430 T432 amod constitutive,activity
R379 T431 T432 compound promoter,activity
R380 T432 T429 dobj activity,displayed
R381 T433 T407 punct .,demonstrated
R382 T434 T441 prep In,was
R383 T435 T436 compound T,cells
R384 T436 T434 pobj cells,In
R385 T437 T441 punct ",",was
R386 T438 T440 det the,promoter
R387 T439 T440 compound A3G,promoter
R388 T440 T441 nsubj promoter,was
R389 T441 T441 ROOT was,was
R390 T442 T441 neg not,was
R391 T443 T441 attr inducible,was
R392 T444 T443 prep by,inducible
R393 T445 T446 amod mitogenic,stimulation
R394 T446 T444 pobj stimulation,by
R395 T447 T446 punct ",",stimulation
R396 T448 T449 compound interferon,treatment
R397 T449 T446 conj treatment,stimulation
R398 T450 T449 cc or,treatment
R399 T451 T449 conj expression,treatment
R400 T452 T451 prep of,expression
R403 T455 T441 punct .,was
R401 T453 T454 amod HIV-1,proteins
R402 T454 T452 pobj proteins,of

sentences

Id Subject Object Predicate Lexical cue
T68 91-277 Sentence denotes Luciferase reporter assays demonstrated that a 1025 bp A3G promoter sequence (from −959 to +66 relative to the major transcriptional start site) displayed constitutive promoter activity.
T69 278-404 Sentence denotes In T cells, the A3G promoter was not inducible by mitogenic stimulation, interferon treatment or expression of HIV-1 proteins.
T6 91-277 Sentence denotes Luciferase reporter assays demonstrated that a 1025 bp A3G promoter sequence (from −959 to +66 relative to the major transcriptional start site) displayed constitutive promoter activity.
T7 278-404 Sentence denotes In T cells, the A3G promoter was not inducible by mitogenic stimulation, interferon treatment or expression of HIV-1 proteins.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T145 14-19 NN denotes start
T146 20-25 NN denotes sites
T147 26-30 VB denotes were
T148 31-41 VB denotes identified
T149 42-44 IN denotes by
T150 45-53 JJ denotes 5′-rapid
T151 54-67 NN denotes amplification
T152 68-70 IN denotes of
T153 71-75 NN denotes cDNA
T154 76-80 VB denotes ends
T155 81-89 NN denotes analysis
T156 91-101 NN denotes Luciferase
T157 102-110 NN denotes reporter
T158 111-117 NN denotes assays
T159 118-130 VB denotes demonstrated
T160 131-135 IN denotes that
T161 136-137 DT denotes a
T162 138-145 NN denotes 1025 bp
T163 146-149 NN denotes A3G
T164 150-158 NN denotes promoter
T165 159-167 NN denotes sequence
T166 168-169 -LRB- denotes (
T167 169-173 IN denotes from
T168 174-178 CD denotes −959
T169 179-181 TO denotes to
T170 182-185 CD denotes +66
T171 186-194 JJ denotes relative
T172 195-197 TO denotes to
T173 198-201 DT denotes the
T174 202-207 JJ denotes major
T175 208-223 JJ denotes transcriptional
T176 224-229 NN denotes start
T177 230-234 NN denotes site
T178 234-235 -RRB- denotes )
T179 236-245 VB denotes displayed
T180 246-258 JJ denotes constitutive
T181 259-267 NN denotes promoter
T182 268-276 NN denotes activity
T183 278-280 IN denotes In
T184 281-282 NN denotes T
T185 283-288 NN denotes cells
T186 288-289 -COMMA- denotes ,
T187 290-293 DT denotes the
T188 294-297 NN denotes A3G
T189 298-306 NN denotes promoter
T190 307-310 VB denotes was
T191 311-314 RB denotes not
T192 315-324 JJ denotes inducible
T193 325-327 IN denotes by
T194 328-337 JJ denotes mitogenic
T195 338-349 NN denotes stimulation
T196 349-350 -COMMA- denotes ,
T197 351-361 NN denotes interferon
T198 362-371 NN denotes treatment
T199 372-374 CC denotes or
T200 375-385 NN denotes expression
T201 386-388 IN denotes of
T202 389-394 NN denotes HIV-1
T203 395-403 NN denotes proteins
R117 T146 T145 arg1Of sites,start
R118 T146 T147 arg1Of sites,were
R119 T146 T148 arg2Of sites,identified
R120 T148 T147 arg2Of identified,were
R121 T151 T148 arg1Of amplification,identified
R122 T151 T149 arg2Of amplification,by
R123 T151 T150 arg1Of amplification,5′-rapid
R124 T153 T152 arg1Of cDNA,of
R125 T153 T154 arg1Of cDNA,ends
R126 T154 T147 modOf ends,were
R127 T155 T154 arg2Of analysis,ends
R128 T158 T156 arg1Of assays,Luciferase
R129 T158 T157 arg1Of assays,reporter
R130 T158 T159 arg1Of assays,demonstrated
R131 T165 T161 arg1Of sequence,a
R132 T165 T162 arg1Of sequence,1025 bp
R133 T165 T163 arg1Of sequence,A3G
R134 T165 T164 arg1Of sequence,promoter
R135 T165 T166 arg1Of sequence,(
R136 T165 T179 arg1Of sequence,displayed
R137 T167 T166 arg2Of from,(
R138 T170 T167 arg2Of +66,from
R139 T170 T168 arg1Of +66,−959
R140 T170 T169 arg1Of +66,to
R141 T170 T172 arg1Of +66,to
R142 T172 T171 arg1Of to,relative
R143 T177 T172 arg2Of site,to
R144 T177 T173 arg1Of site,the
R145 T177 T174 arg1Of site,major
R146 T177 T175 arg1Of site,transcriptional
R147 T177 T176 arg1Of site,start
R148 T178 T166 arg3Of ),(
R149 T179 T159 arg2Of displayed,demonstrated
R150 T179 T160 arg1Of displayed,that
R151 T182 T179 arg2Of activity,displayed
R152 T182 T180 arg1Of activity,constitutive
R153 T182 T181 arg1Of activity,promoter
R154 T185 T183 arg2Of cells,In
R155 T185 T184 arg1Of cells,T
R156 T189 T187 arg1Of promoter,the
R157 T189 T188 arg1Of promoter,A3G
R158 T189 T190 arg1Of promoter,was
R159 T189 T192 arg1Of promoter,inducible
R160 T190 T183 arg1Of was,In
R161 T190 T186 arg1Of was,","
R162 T190 T191 arg1Of was,not
R163 T192 T190 arg2Of inducible,was
R164 T192 T193 arg1Of inducible,by
R165 T195 T194 arg1Of stimulation,mitogenic
R166 T195 T196 arg1Of stimulation,","
R167 T196 T199 arg1Of ",",or
R168 T198 T196 arg2Of treatment,","
R169 T198 T197 arg1Of treatment,interferon
R170 T199 T193 arg2Of or,by
R171 T199 T201 arg1Of or,of
R172 T200 T199 arg2Of expression,or
R173 T203 T201 arg2Of proteins,of
R174 T203 T202 arg1Of proteins,HIV-1

events-check-again

Id Subject Object Predicate Lexical cue Negation
T668 91-101 Protein denotes Luciferase
T669 294-297 Protein denotes A3G
T670 298-306 Entity denotes promoter
T671 315-324 Positive_regulation denotes inducible true
R553 T670 T671 themeOf promoter,inducible
R554 T670 T669 partOf promoter,A3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T690 91-101 Protein denotes Luciferase
T691 294-306 Protein denotes A3G promoter
T692 351-361 Protein denotes interferon

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T54 91-101 Protein denotes Luciferase
T55 294-297 Protein denotes A3G
T56 298-306 Entity denotes promoter
T57 315-324 Positive_regulation denotes inducible true
R35 T56 T57 themeOf promoter,inducible
R36 T56 T55 partOf promoter,A3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T301 91-101 P08659 denotes Luciferase
T302 146-149 Q9HC16 denotes A3G
T303 186-194 Q04864 denotes relative
T304 294-297 Q9HC16 denotes A3G