
PMC:1920263 / 34409-34655
Annnotations
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12841 | 45-48 | Protein | denotes | Sp1 |
T12842 | 52-55 | Protein | denotes | Sp3 |
T12843 | 114-117 | Protein | denotes | Sp1 |
T12844 | 160-163 | Protein | denotes | Sp3 |
T12845 | 178-185 | Negative_regulation | denotes | reduced |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13139 | 0-13 | NN | denotes | Functionality |
T13140 | 14-16 | IN | denotes | of |
T13141 | 17-20 | DT | denotes | the |
T13142 | 21-27 | NNPS | denotes | siRNAs |
T13143 | 28-36 | VBD | denotes | directed |
T13144 | 37-44 | IN | denotes | against |
T13145 | 45-48 | NNP | denotes | Sp1 |
T13146 | 49-51 | CC | denotes | or |
T13147 | 52-55 | NNP | denotes | Sp3 |
T13148 | 56-59 | VBD | denotes | was |
T13149 | 60-69 | VBN | denotes | confirmed |
T13150 | 70-72 | IN | denotes | by |
T13151 | 73-80 | JJ | denotes | western |
T13152 | 81-85 | NN | denotes | blot |
T13153 | 86-94 | NN | denotes | analysis |
T13154 | 94-95 | : | denotes | : |
T13155 | 96-103 | NN | denotes | protein |
T13156 | 104-110 | NNS | denotes | levels |
T13157 | 111-113 | IN | denotes | of |
T13158 | 114-117 | NNP | denotes | Sp1 |
T13159 | 118-120 | RB | denotes | as |
T13160 | 121-125 | RB | denotes | well |
T13161 | 126-128 | IN | denotes | as |
T13162 | 129-132 | DT | denotes | the |
T13163 | 133-137 | JJ | denotes | long |
T13164 | 138-141 | CC | denotes | and |
T13165 | 142-147 | JJ | denotes | short |
T13166 | 148-156 | NNS | denotes | isoforms |
T13167 | 157-159 | IN | denotes | of |
T13168 | 160-163 | JJ | denotes | Sp3 |
T13169 | 164-168 | VBD | denotes | were |
T13170 | 169-177 | RB | denotes | strongly |
T13171 | 178-185 | VBN | denotes | reduced |
T13172 | 186-188 | IN | denotes | in |
T13173 | 189-192 | DT | denotes | the |
T13174 | 193-201 | NN | denotes | presence |
T13175 | 202-204 | IN | denotes | of |
T13176 | 205-208 | CD | denotes | 150 |
T13177 | 209-211 | CC | denotes | or |
T13178 | 212-215 | CD | denotes | 300 |
T13179 | 216-218 | NN | denotes | ng |
T13180 | 219-227 | JJ | denotes | specific |
T13181 | 228-233 | NNP | denotes | siRNA |
T13182 | 234-235 | -LRB- | denotes | ( |
T13183 | 235-241 | NNP | denotes | Figure |
T13184 | 242-244 | NN | denotes | 7A |
T13185 | 244-245 | -RRB- | denotes | ) |
T13186 | 245-246 | . | denotes | . |
R10642 | T13139 | T13143 | nsubj | Functionality,directed |
R10643 | T13140 | T13139 | prep | of,Functionality |
R10644 | T13141 | T13142 | det | the,siRNAs |
R10645 | T13142 | T13140 | pobj | siRNAs,of |
R10646 | T13143 | T13143 | ROOT | directed,directed |
R10647 | T13144 | T13143 | prep | against,directed |
R10648 | T13145 | T13144 | pobj | Sp1,against |
R10649 | T13146 | T13145 | cc | or,Sp1 |
R10650 | T13147 | T13145 | conj | Sp3,Sp1 |
R10651 | T13148 | T13149 | auxpass | was,confirmed |
R10652 | T13149 | T13143 | advcl | confirmed,directed |
R10653 | T13150 | T13149 | agent | by,confirmed |
R10654 | T13151 | T13153 | amod | western,analysis |
R10655 | T13152 | T13153 | compound | blot,analysis |
R10656 | T13153 | T13150 | pobj | analysis,by |
R10657 | T13154 | T13143 | punct | :,directed |
R10658 | T13155 | T13156 | compound | protein,levels |
R10659 | T13156 | T13171 | nsubjpass | levels,reduced |
R10660 | T13157 | T13156 | prep | of,levels |
R10661 | T13158 | T13157 | pobj | Sp1,of |
R10662 | T13159 | T13161 | advmod | as,as |
R10663 | T13160 | T13161 | advmod | well,as |
R10664 | T13161 | T13156 | cc | as,levels |
R10665 | T13162 | T13166 | det | the,isoforms |
R10666 | T13163 | T13166 | amod | long,isoforms |
R10667 | T13164 | T13163 | cc | and,long |
R10668 | T13165 | T13163 | conj | short,long |
R10669 | T13166 | T13156 | conj | isoforms,levels |
R10670 | T13167 | T13166 | prep | of,isoforms |
R10671 | T13168 | T13167 | pobj | Sp3,of |
R10672 | T13169 | T13171 | auxpass | were,reduced |
R10673 | T13170 | T13171 | advmod | strongly,reduced |
R10674 | T13171 | T13143 | conj | reduced,directed |
R10675 | T13172 | T13171 | prep | in,reduced |
R10676 | T13173 | T13174 | det | the,presence |
R10677 | T13174 | T13172 | pobj | presence,in |
R10678 | T13175 | T13174 | prep | of,presence |
R10679 | T13176 | T13179 | nummod | 150,ng |
R10680 | T13177 | T13176 | cc | or,150 |
R10681 | T13178 | T13176 | conj | 300,150 |
R10682 | T13179 | T13175 | pobj | ng,of |
R10683 | T13180 | T13181 | amod | specific,siRNA |
R10684 | T13181 | T13179 | appos | siRNA,ng |
R10685 | T13182 | T13184 | punct | (,7A |
R10686 | T13183 | T13184 | compound | Figure,7A |
R10687 | T13184 | T13181 | appos | 7A,siRNA |
R10688 | T13185 | T13184 | punct | ),7A |
R10689 | T13186 | T13171 | punct | .,reduced |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12885 | 0-246 | Sentence | denotes | Functionality of the siRNAs directed against Sp1 or Sp3 was confirmed by western blot analysis: protein levels of Sp1 as well as the long and short isoforms of Sp3 were strongly reduced in the presence of 150 or 300 ng specific siRNA (Figure 7A). |
T241 | 0-246 | Sentence | denotes | Functionality of the siRNAs directed against Sp1 or Sp3 was confirmed by western blot analysis: protein levels of Sp1 as well as the long and short isoforms of Sp3 were strongly reduced in the presence of 150 or 300 ng specific siRNA (Figure 7A). |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12932 | 0-13 | NN | denotes | Functionality |
T12933 | 14-16 | IN | denotes | of |
T12934 | 17-20 | DT | denotes | the |
T12935 | 21-27 | NN | denotes | siRNAs |
T12936 | 28-36 | VB | denotes | directed |
T12937 | 37-44 | IN | denotes | against |
T12938 | 45-48 | NN | denotes | Sp1 |
T12939 | 49-51 | CC | denotes | or |
T12940 | 52-55 | NN | denotes | Sp3 |
T12941 | 56-59 | VB | denotes | was |
T12942 | 60-69 | VB | denotes | confirmed |
T12943 | 70-72 | IN | denotes | by |
T12944 | 73-80 | JJ | denotes | western |
T12945 | 81-85 | NN | denotes | blot |
T12946 | 86-94 | NN | denotes | analysis |
T12947 | 94-95 | -COLON- | denotes | : |
T12948 | 96-103 | NN | denotes | protein |
T12949 | 104-110 | NN | denotes | levels |
T12950 | 111-113 | IN | denotes | of |
T12951 | 114-117 | NN | denotes | Sp1 |
T12952 | 118-120 | RB | denotes | as |
T12953 | 121-125 | RB | denotes | well |
T12954 | 126-128 | IN | denotes | as |
T12955 | 129-132 | DT | denotes | the |
T12956 | 133-137 | JJ | denotes | long |
T12957 | 138-141 | CC | denotes | and |
T12958 | 142-147 | JJ | denotes | short |
T12959 | 148-156 | NN | denotes | isoforms |
T12960 | 157-159 | IN | denotes | of |
T12961 | 160-163 | NN | denotes | Sp3 |
T12962 | 164-168 | VB | denotes | were |
T12963 | 169-177 | RB | denotes | strongly |
T12964 | 178-185 | VB | denotes | reduced |
T12965 | 186-188 | IN | denotes | in |
T12966 | 189-192 | DT | denotes | the |
T12967 | 193-201 | NN | denotes | presence |
T12968 | 202-204 | IN | denotes | of |
T12969 | 205-208 | CD | denotes | 150 |
T12970 | 209-211 | CC | denotes | or |
T12971 | 212-218 | CD | denotes | 300 ng |
T12972 | 219-227 | JJ | denotes | specific |
T12973 | 228-233 | NN | denotes | siRNA |
T12974 | 234-235 | -LRB- | denotes | ( |
T12975 | 235-241 | NN | denotes | Figure |
T12976 | 242-244 | NN | denotes | 7A |
T12977 | 244-245 | -RRB- | denotes | ) |
R10461 | T12932 | T12933 | arg1Of | Functionality,of |
R10462 | T12932 | T12941 | arg1Of | Functionality,was |
R10463 | T12932 | T12942 | arg2Of | Functionality,confirmed |
R10464 | T12935 | T12933 | arg2Of | siRNAs,of |
R10465 | T12935 | T12934 | arg1Of | siRNAs,the |
R10466 | T12935 | T12936 | arg2Of | siRNAs,directed |
R10467 | T12936 | T12937 | arg1Of | directed,against |
R10468 | T12938 | T12939 | arg1Of | Sp1,or |
R10469 | T12939 | T12937 | arg2Of | or,against |
R10470 | T12940 | T12939 | arg2Of | Sp3,or |
R10471 | T12942 | T12941 | arg2Of | confirmed,was |
R10472 | T12946 | T12942 | arg1Of | analysis,confirmed |
R10473 | T12946 | T12943 | arg2Of | analysis,by |
R10474 | T12946 | T12944 | arg1Of | analysis,western |
R10475 | T12946 | T12945 | arg1Of | analysis,blot |
R10476 | T12946 | T12962 | modOf | analysis,were |
R10477 | T12949 | T12948 | arg1Of | levels,protein |
R10478 | T12949 | T12950 | arg1Of | levels,of |
R10479 | T12949 | T12954 | arg1Of | levels,as |
R10480 | T12951 | T12950 | arg2Of | Sp1,of |
R10481 | T12954 | T12952 | arg1Of | as,as |
R10482 | T12954 | T12953 | arg1Of | as,well |
R10483 | T12954 | T12962 | arg1Of | as,were |
R10484 | T12954 | T12964 | arg2Of | as,reduced |
R10485 | T12956 | T12957 | arg1Of | long,and |
R10486 | T12958 | T12957 | arg2Of | short,and |
R10487 | T12959 | T12954 | arg2Of | isoforms,as |
R10488 | T12959 | T12955 | arg1Of | isoforms,the |
R10489 | T12959 | T12956 | arg1Of | isoforms,long |
R10490 | T12959 | T12958 | arg1Of | isoforms,short |
R10491 | T12959 | T12960 | arg1Of | isoforms,of |
R10492 | T12961 | T12960 | arg2Of | Sp3,of |
R10493 | T12964 | T12947 | arg1Of | reduced,: |
R10494 | T12964 | T12962 | arg2Of | reduced,were |
R10495 | T12964 | T12963 | arg1Of | reduced,strongly |
R10496 | T12964 | T12965 | arg1Of | reduced,in |
R10497 | T12967 | T12965 | arg2Of | presence,in |
R10498 | T12967 | T12966 | arg1Of | presence,the |
R10499 | T12967 | T12968 | arg1Of | presence,of |
R10500 | T12969 | T12970 | arg1Of | 150,or |
R10501 | T12971 | T12970 | arg2Of | 300 ng,or |
R10502 | T12972 | T12969 | arg1Of | specific,150 |
R10503 | T12972 | T12971 | arg1Of | specific,300 ng |
R10504 | T12973 | T12968 | arg2Of | siRNA,of |
R10505 | T12973 | T12972 | arg1Of | siRNA,specific |
R10506 | T12973 | T12974 | arg1Of | siRNA,( |
R10507 | T12976 | T12974 | arg2Of | 7A,( |
R10508 | T12976 | T12975 | arg1Of | 7A,Figure |
R10509 | T12977 | T12974 | arg3Of | ),( |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13431 | 45-48 | Protein | denotes | Sp1 |
T13432 | 52-55 | Protein | denotes | Sp3 |
T13433 | 96-110 | Gene_expression | denotes | protein levels |
T13434 | 96-110 | Gene_expression | denotes | protein levels |
T13435 | 114-117 | Protein | denotes | Sp1 |
T13436 | 160-163 | Protein | denotes | Sp3 |
T13437 | 178-185 | Negative_regulation | denotes | reduced |
T13438 | 178-185 | Negative_regulation | denotes | reduced |
R10851 | T13433 | T13438 | themeOf | protein levels,reduced |
R10852 | T13434 | T13437 | themeOf | protein levels,reduced |
R10853 | T13435 | T13433 | themeOf | Sp1,protein levels |
R10854 | T13436 | T13434 | themeOf | Sp3,protein levels |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13461 | 45-48 | Protein | denotes | Sp1 |
T13462 | 52-55 | Protein | denotes | Sp3 |
T13463 | 114-117 | Protein | denotes | Sp1 |
T13464 | 160-163 | Protein | denotes | Sp3 |
T13465 | 104-110 | Gene_expression | denotes | levels |
T13466 | 104-110 | Gene_expression | denotes | levels |
T13467 | 178-185 | Negative_regulation | denotes | reduced |
T13468 | 178-185 | Negative_regulation | denotes | reduced |
R10869 | T13463 | T13465 | themeOf | Sp1,levels |
R10870 | T13464 | T13466 | themeOf | Sp3,levels |
R10871 | T13465 | T13467 | themeOf | levels,reduced |
R10872 | T13466 | T13468 | themeOf | levels,reduced |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T12868 | 114-117 | Protein | denotes | Sp1 |
T12869 | 160-163 | Protein | denotes | Sp3 |
T12870 | 178-185 | Negative_regulation | denotes | reduced |
T12871 | 178-185 | Negative_regulation | denotes | reduced |
T12864 | 45-48 | Protein | denotes | Sp1 |
T12865 | 52-55 | Protein | denotes | Sp3 |
T12866 | 96-110 | Gene_expression | denotes | protein levels |
T12867 | 96-110 | Gene_expression | denotes | protein levels |
R10423 | T12869 | T12867 | themeOf | Sp3,protein levels |
R10420 | T12866 | T12871 | themeOf | protein levels,reduced |
R10421 | T12867 | T12870 | themeOf | protein levels,reduced |
R10422 | T12868 | T12866 | themeOf | Sp1,protein levels |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T13085 | 45-48 | P08047 | denotes | Sp1 |
T13086 | 52-55 | Q02447 | denotes | Sp3 |
T13087 | 114-117 | P08047 | denotes | Sp1 |
T13088 | 160-163 | Q02447 | denotes | Sp3 |