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PMC:1920263 / 34409-34655 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T12841 45-48 Protein denotes Sp1
T12842 52-55 Protein denotes Sp3
T12843 114-117 Protein denotes Sp1
T12844 160-163 Protein denotes Sp3
T12845 178-185 Negative_regulation denotes reduced

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13139 0-13 NN denotes Functionality
T13140 14-16 IN denotes of
T13141 17-20 DT denotes the
T13142 21-27 NNPS denotes siRNAs
T13143 28-36 VBD denotes directed
T13144 37-44 IN denotes against
T13145 45-48 NNP denotes Sp1
T13146 49-51 CC denotes or
T13147 52-55 NNP denotes Sp3
T13148 56-59 VBD denotes was
T13149 60-69 VBN denotes confirmed
T13150 70-72 IN denotes by
T13151 73-80 JJ denotes western
T13152 81-85 NN denotes blot
T13153 86-94 NN denotes analysis
T13154 94-95 : denotes :
T13155 96-103 NN denotes protein
T13156 104-110 NNS denotes levels
T13157 111-113 IN denotes of
T13158 114-117 NNP denotes Sp1
T13159 118-120 RB denotes as
T13160 121-125 RB denotes well
T13161 126-128 IN denotes as
T13162 129-132 DT denotes the
T13163 133-137 JJ denotes long
T13164 138-141 CC denotes and
T13165 142-147 JJ denotes short
T13166 148-156 NNS denotes isoforms
T13167 157-159 IN denotes of
T13168 160-163 JJ denotes Sp3
T13169 164-168 VBD denotes were
T13170 169-177 RB denotes strongly
T13171 178-185 VBN denotes reduced
T13172 186-188 IN denotes in
T13173 189-192 DT denotes the
T13174 193-201 NN denotes presence
T13175 202-204 IN denotes of
T13176 205-208 CD denotes 150
T13177 209-211 CC denotes or
T13178 212-215 CD denotes 300
T13179 216-218 NN denotes ng
T13180 219-227 JJ denotes specific
T13181 228-233 NNP denotes siRNA
T13182 234-235 -LRB- denotes (
T13183 235-241 NNP denotes Figure
T13184 242-244 NN denotes 7A
T13185 244-245 -RRB- denotes )
T13186 245-246 . denotes .
R10642 T13139 T13143 nsubj Functionality,directed
R10643 T13140 T13139 prep of,Functionality
R10644 T13141 T13142 det the,siRNAs
R10645 T13142 T13140 pobj siRNAs,of
R10646 T13143 T13143 ROOT directed,directed
R10647 T13144 T13143 prep against,directed
R10648 T13145 T13144 pobj Sp1,against
R10649 T13146 T13145 cc or,Sp1
R10650 T13147 T13145 conj Sp3,Sp1
R10651 T13148 T13149 auxpass was,confirmed
R10652 T13149 T13143 advcl confirmed,directed
R10653 T13150 T13149 agent by,confirmed
R10654 T13151 T13153 amod western,analysis
R10655 T13152 T13153 compound blot,analysis
R10656 T13153 T13150 pobj analysis,by
R10657 T13154 T13143 punct :,directed
R10658 T13155 T13156 compound protein,levels
R10659 T13156 T13171 nsubjpass levels,reduced
R10660 T13157 T13156 prep of,levels
R10661 T13158 T13157 pobj Sp1,of
R10662 T13159 T13161 advmod as,as
R10663 T13160 T13161 advmod well,as
R10664 T13161 T13156 cc as,levels
R10665 T13162 T13166 det the,isoforms
R10666 T13163 T13166 amod long,isoforms
R10667 T13164 T13163 cc and,long
R10668 T13165 T13163 conj short,long
R10669 T13166 T13156 conj isoforms,levels
R10670 T13167 T13166 prep of,isoforms
R10671 T13168 T13167 pobj Sp3,of
R10672 T13169 T13171 auxpass were,reduced
R10673 T13170 T13171 advmod strongly,reduced
R10674 T13171 T13143 conj reduced,directed
R10675 T13172 T13171 prep in,reduced
R10676 T13173 T13174 det the,presence
R10677 T13174 T13172 pobj presence,in
R10678 T13175 T13174 prep of,presence
R10679 T13176 T13179 nummod 150,ng
R10680 T13177 T13176 cc or,150
R10681 T13178 T13176 conj 300,150
R10682 T13179 T13175 pobj ng,of
R10683 T13180 T13181 amod specific,siRNA
R10684 T13181 T13179 appos siRNA,ng
R10685 T13182 T13184 punct (,7A
R10686 T13183 T13184 compound Figure,7A
R10687 T13184 T13181 appos 7A,siRNA
R10688 T13185 T13184 punct ),7A
R10689 T13186 T13171 punct .,reduced

sentences

Id Subject Object Predicate Lexical cue
T12885 0-246 Sentence denotes Functionality of the siRNAs directed against Sp1 or Sp3 was confirmed by western blot analysis: protein levels of Sp1 as well as the long and short isoforms of Sp3 were strongly reduced in the presence of 150 or 300 ng specific siRNA (Figure 7A).
T241 0-246 Sentence denotes Functionality of the siRNAs directed against Sp1 or Sp3 was confirmed by western blot analysis: protein levels of Sp1 as well as the long and short isoforms of Sp3 were strongly reduced in the presence of 150 or 300 ng specific siRNA (Figure 7A).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12932 0-13 NN denotes Functionality
T12933 14-16 IN denotes of
T12934 17-20 DT denotes the
T12935 21-27 NN denotes siRNAs
T12936 28-36 VB denotes directed
T12937 37-44 IN denotes against
T12938 45-48 NN denotes Sp1
T12939 49-51 CC denotes or
T12940 52-55 NN denotes Sp3
T12941 56-59 VB denotes was
T12942 60-69 VB denotes confirmed
T12943 70-72 IN denotes by
T12944 73-80 JJ denotes western
T12945 81-85 NN denotes blot
T12946 86-94 NN denotes analysis
T12947 94-95 -COLON- denotes :
T12948 96-103 NN denotes protein
T12949 104-110 NN denotes levels
T12950 111-113 IN denotes of
T12951 114-117 NN denotes Sp1
T12952 118-120 RB denotes as
T12953 121-125 RB denotes well
T12954 126-128 IN denotes as
T12955 129-132 DT denotes the
T12956 133-137 JJ denotes long
T12957 138-141 CC denotes and
T12958 142-147 JJ denotes short
T12959 148-156 NN denotes isoforms
T12960 157-159 IN denotes of
T12961 160-163 NN denotes Sp3
T12962 164-168 VB denotes were
T12963 169-177 RB denotes strongly
T12964 178-185 VB denotes reduced
T12965 186-188 IN denotes in
T12966 189-192 DT denotes the
T12967 193-201 NN denotes presence
T12968 202-204 IN denotes of
T12969 205-208 CD denotes 150
T12970 209-211 CC denotes or
T12971 212-218 CD denotes 300 ng
T12972 219-227 JJ denotes specific
T12973 228-233 NN denotes siRNA
T12974 234-235 -LRB- denotes (
T12975 235-241 NN denotes Figure
T12976 242-244 NN denotes 7A
T12977 244-245 -RRB- denotes )
R10461 T12932 T12933 arg1Of Functionality,of
R10462 T12932 T12941 arg1Of Functionality,was
R10463 T12932 T12942 arg2Of Functionality,confirmed
R10464 T12935 T12933 arg2Of siRNAs,of
R10465 T12935 T12934 arg1Of siRNAs,the
R10466 T12935 T12936 arg2Of siRNAs,directed
R10467 T12936 T12937 arg1Of directed,against
R10468 T12938 T12939 arg1Of Sp1,or
R10469 T12939 T12937 arg2Of or,against
R10470 T12940 T12939 arg2Of Sp3,or
R10471 T12942 T12941 arg2Of confirmed,was
R10472 T12946 T12942 arg1Of analysis,confirmed
R10473 T12946 T12943 arg2Of analysis,by
R10474 T12946 T12944 arg1Of analysis,western
R10475 T12946 T12945 arg1Of analysis,blot
R10476 T12946 T12962 modOf analysis,were
R10477 T12949 T12948 arg1Of levels,protein
R10478 T12949 T12950 arg1Of levels,of
R10479 T12949 T12954 arg1Of levels,as
R10480 T12951 T12950 arg2Of Sp1,of
R10481 T12954 T12952 arg1Of as,as
R10482 T12954 T12953 arg1Of as,well
R10483 T12954 T12962 arg1Of as,were
R10484 T12954 T12964 arg2Of as,reduced
R10485 T12956 T12957 arg1Of long,and
R10486 T12958 T12957 arg2Of short,and
R10487 T12959 T12954 arg2Of isoforms,as
R10488 T12959 T12955 arg1Of isoforms,the
R10489 T12959 T12956 arg1Of isoforms,long
R10490 T12959 T12958 arg1Of isoforms,short
R10491 T12959 T12960 arg1Of isoforms,of
R10492 T12961 T12960 arg2Of Sp3,of
R10493 T12964 T12947 arg1Of reduced,:
R10494 T12964 T12962 arg2Of reduced,were
R10495 T12964 T12963 arg1Of reduced,strongly
R10496 T12964 T12965 arg1Of reduced,in
R10497 T12967 T12965 arg2Of presence,in
R10498 T12967 T12966 arg1Of presence,the
R10499 T12967 T12968 arg1Of presence,of
R10500 T12969 T12970 arg1Of 150,or
R10501 T12971 T12970 arg2Of 300 ng,or
R10502 T12972 T12969 arg1Of specific,150
R10503 T12972 T12971 arg1Of specific,300 ng
R10504 T12973 T12968 arg2Of siRNA,of
R10505 T12973 T12972 arg1Of siRNA,specific
R10506 T12973 T12974 arg1Of siRNA,(
R10507 T12976 T12974 arg2Of 7A,(
R10508 T12976 T12975 arg1Of 7A,Figure
R10509 T12977 T12974 arg3Of ),(

events-check-again

Id Subject Object Predicate Lexical cue
T13431 45-48 Protein denotes Sp1
T13432 52-55 Protein denotes Sp3
T13433 96-110 Gene_expression denotes protein levels
T13434 96-110 Gene_expression denotes protein levels
T13435 114-117 Protein denotes Sp1
T13436 160-163 Protein denotes Sp3
T13437 178-185 Negative_regulation denotes reduced
T13438 178-185 Negative_regulation denotes reduced
R10851 T13433 T13438 themeOf protein levels,reduced
R10852 T13434 T13437 themeOf protein levels,reduced
R10853 T13435 T13433 themeOf Sp1,protein levels
R10854 T13436 T13434 themeOf Sp3,protein levels

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T13461 45-48 Protein denotes Sp1
T13462 52-55 Protein denotes Sp3
T13463 114-117 Protein denotes Sp1
T13464 160-163 Protein denotes Sp3
T13465 104-110 Gene_expression denotes levels
T13466 104-110 Gene_expression denotes levels
T13467 178-185 Negative_regulation denotes reduced
T13468 178-185 Negative_regulation denotes reduced
R10869 T13463 T13465 themeOf Sp1,levels
R10870 T13464 T13466 themeOf Sp3,levels
R10871 T13465 T13467 themeOf levels,reduced
R10872 T13466 T13468 themeOf levels,reduced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T12868 114-117 Protein denotes Sp1
T12869 160-163 Protein denotes Sp3
T12870 178-185 Negative_regulation denotes reduced
T12871 178-185 Negative_regulation denotes reduced
T12864 45-48 Protein denotes Sp1
T12865 52-55 Protein denotes Sp3
T12866 96-110 Gene_expression denotes protein levels
T12867 96-110 Gene_expression denotes protein levels
R10423 T12869 T12867 themeOf Sp3,protein levels
R10420 T12866 T12871 themeOf protein levels,reduced
R10421 T12867 T12870 themeOf protein levels,reduced
R10422 T12868 T12866 themeOf Sp1,protein levels

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13085 45-48 P08047 denotes Sp1
T13086 52-55 Q02447 denotes Sp3
T13087 114-117 P08047 denotes Sp1
T13088 160-163 Q02447 denotes Sp3