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PMC:1920263 / 3417-4152 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T782 46-49 Protein denotes A3G
T783 71-80 Gene_expression denotes expressed
T784 254-265 Positive_regulation denotes upregulates
T785 266-269 Protein denotes A3G
T786 354-357 Protein denotes A3G
T787 437-440 Protein denotes A3G
T788 525-528 Protein denotes A3G
T789 624-627 Protein denotes A3G
R626 T782 T783 themeOf A3G,expressed
R627 T785 T784 themeOf A3G,upregulates

GO-CC

Id Subject Object Predicate Lexical cue
T1986 86-91 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1987 248-253 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1988 487-492 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1989 708-713 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-BP

Id Subject Object Predicate Lexical cue
T870 688-701 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T877 4-11 http://purl.obolibrary.org/obo/GO_0051235 denotes storage
T878 19-30 http://purl.obolibrary.org/obo/GO_0006412 denotes translating
T879 165-175 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T880 471-481 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1804 0-3 CC denotes and
T1805 4-11 NN denotes storage
T1806 12-14 IN denotes of
T1807 15-30 JJ denotes non-translating
T1808 31-36 NNS denotes mRNAs
T1809 37-38 -LRB- denotes (
T1810 38-43 CD denotes 30,31
T1811 43-44 -RRB- denotes )
T1812 44-45 . denotes .
T1813 46-49 CD denotes A3G
T1814 50-53 VBZ denotes has
T1815 54-58 VBN denotes been
T1816 59-64 VBN denotes shown
T1817 65-67 TO denotes to
T1818 68-70 VB denotes be
T1819 71-80 VBN denotes expressed
T1820 81-83 IN denotes in
T1821 84-85 NNP denotes T
T1822 86-91 NNS denotes cells
T1823 91-92 , denotes ,
T1824 93-94 DT denotes a
T1825 95-103 JJ denotes relevant
T1826 104-108 NN denotes cell
T1827 109-115 NN denotes target
T1828 116-119 IN denotes for
T1829 120-125 NNP denotes HIV-1
T1830 126-128 IN denotes in
T1831 129-133 NN denotes vivo
T1832 133-134 , denotes ,
T1833 135-138 CC denotes but
T1834 139-145 RB denotes little
T1835 146-148 VBZ denotes is
T1836 149-154 VBN denotes known
T1837 155-160 IN denotes about
T1838 161-164 PRP$ denotes its
T1839 165-175 NN denotes regulation
T1840 176-177 -LRB- denotes (
T1841 177-184 CD denotes 4,29,32
T1842 184-185 -RRB- denotes )
T1843 185-186 . denotes .
T1844 187-192 EX denotes There
T1845 193-195 VBZ denotes is
T1846 196-197 DT denotes a
T1847 198-204 NN denotes report
T1848 205-215 VBG denotes describing
T1849 216-220 IN denotes that
T1850 221-230 JJ denotes mitogenic
T1851 231-242 NN denotes stimulation
T1852 243-245 IN denotes of
T1853 246-247 NNP denotes T
T1854 248-253 NNS denotes cells
T1855 254-265 VBZ denotes upregulates
T1856 266-269 NNP denotes A3G
T1857 270-274 NNP denotes mRNA
T1858 275-281 NNS denotes levels
T1859 281-282 , denotes ,
T1860 283-286 CC denotes but
T1861 287-291 DT denotes this
T1862 292-295 VBD denotes was
T1863 296-299 RB denotes not
T1864 300-308 VBN denotes analyzed
T1865 309-311 IN denotes on
T1866 312-315 DT denotes the
T1867 316-331 JJ denotes transcriptional
T1868 332-337 NN denotes level
T1869 338-339 -LRB- denotes (
T1870 339-341 CD denotes 33
T1871 341-342 -RRB- denotes )
T1872 342-343 . denotes .
T1873 344-349 IN denotes Since
T1874 350-353 DT denotes the
T1875 354-357 NNP denotes A3G
T1876 358-366 NN denotes promoter
T1877 367-370 VBZ denotes has
T1878 371-374 RB denotes not
T1879 375-379 VBN denotes been
T1880 380-394 RB denotes systematically
T1881 395-403 VBN denotes analyzed
T1882 404-406 RB denotes so
T1883 407-410 RB denotes far
T1884 410-411 , denotes ,
T1885 412-415 PRP$ denotes our
T1886 416-419 NN denotes aim
T1887 420-423 VBD denotes was
T1888 424-426 TO denotes to
T1889 427-432 VB denotes clone
T1890 433-436 DT denotes the
T1891 437-440 NNP denotes A3G
T1892 441-449 NN denotes promoter
T1893 450-453 CC denotes and
T1894 454-466 VB denotes characterize
T1895 467-470 PRP$ denotes its
T1896 471-481 NN denotes regulation
T1897 482-484 IN denotes in
T1898 485-486 NNP denotes T
T1899 487-492 NNS denotes cells
T1900 492-493 . denotes .
T1901 494-496 IN denotes In
T1902 497-500 PRP$ denotes our
T1903 501-506 NN denotes study
T1904 506-507 , denotes ,
T1905 508-510 PRP denotes we
T1906 511-519 VBD denotes observed
T1907 520-524 IN denotes that
T1908 525-528 NNP denotes A3G
T1909 529-533 VBZ denotes uses
T1910 534-542 JJ denotes multiple
T1911 543-558 JJ denotes transcriptional
T1912 559-564 NN denotes start
T1913 565-570 NNS denotes sites
T1914 571-572 -LRB- denotes (
T1915 572-575 NNP denotes TSS
T1916 575-576 -RRB- denotes )
T1917 576-577 . denotes .
T1918 578-580 IN denotes By
T1919 581-591 VBG denotes generating
T1920 592-593 DT denotes a
T1921 594-600 NN denotes series
T1922 601-603 IN denotes of
T1923 604-605 CD denotes 5
T1924 605-606 CD denotes ′
T1925 607-616 NNS denotes deletions
T1926 617-619 IN denotes of
T1927 620-623 DT denotes the
T1928 624-627 NNP denotes A3G
T1929 628-636 NN denotes promoter
T1930 636-637 , denotes ,
T1931 638-640 PRP denotes we
T1932 641-651 VBD denotes identified
T1933 652-653 DT denotes a
T1934 654-657 CD denotes 180
T1935 658-660 NN denotes bp
T1936 661-667 NN denotes region
T1937 668-672 WDT denotes that
T1938 673-681 VBD denotes mediated
T1939 682-687 JJ denotes basal
T1940 688-701 NN denotes transcription
T1941 701-702 . denotes .
T1942 703-705 IN denotes In
T1943 706-707 NNP denotes T
T1944 708-713 NNS denotes cells
T1945 713-714 , denotes ,
T1946 715-730 JJ denotes transcriptional
R1516 T1844 T1845 expl There,is
R1519 T1845 T1845 ROOT is,is
R1523 T1846 T1847 det a,report
R1526 T1847 T1845 attr report,is
R1530 T1848 T1847 acl describing,report
R1535 T1849 T1851 det that,stimulation
R1538 T1850 T1851 amod mitogenic,stimulation
R1542 T1851 T1848 dobj stimulation,describing
R1546 T1852 T1851 prep of,stimulation
R1549 T1853 T1854 compound T,cells
R1553 T1854 T1852 pobj cells,of
R1561 T1855 T1845 dep upregulates,is
R1565 T1856 T1857 compound A3G,mRNA
R1569 T1807 T1808 amod non-translating,mRNAs
R1570 T1857 T1858 compound mRNA,levels
R1571 T1808 T1806 pobj mRNAs,of
R1572 T1809 T1808 punct (,mRNAs
R1573 T1858 T1855 dobj levels,upregulates
R1574 T1810 T1808 appos "30,31",mRNAs
R1575 T1811 T1808 punct ),mRNAs
R1577 T1859 T1845 punct ",",is
R1578 T1813 T1816 nsubjpass A3G,shown
R1579 T1814 T1816 aux has,shown
R1580 T1860 T1845 cc but,is
R1581 T1815 T1816 auxpass been,shown
R1582 T1861 T1864 nsubjpass this,analyzed
R1583 T1816 T1816 ROOT shown,shown
R1584 T1817 T1819 aux to,expressed
R1585 T1862 T1864 auxpass was,analyzed
R1586 T1818 T1819 auxpass be,expressed
R1587 T1819 T1816 xcomp expressed,shown
R1588 T1820 T1819 prep in,expressed
R1589 T1863 T1864 neg not,analyzed
R1590 T1821 T1822 compound T,cells
R1591 T1822 T1820 pobj cells,in
R1592 T1864 T1845 conj analyzed,is
R1593 T1823 T1819 punct ",",expressed
R1594 T1824 T1827 det a,target
R1595 T1825 T1827 amod relevant,target
R1596 T1865 T1864 prep on,analyzed
R1597 T1826 T1827 compound cell,target
R1598 T1866 T1868 det the,level
R1599 T1827 T1816 dobj target,shown
R1600 T1828 T1827 prep for,target
R1601 T1829 T1828 pobj HIV-1,for
R1602 T1830 T1816 prep in,shown
R1603 T1867 T1868 amod transcriptional,level
R1604 T1831 T1830 pobj vivo,in
R1605 T1832 T1816 punct ",",shown
R1606 T1833 T1816 cc but,shown
R1607 T1834 T1836 advmod little,known
R1608 T1835 T1836 auxpass is,known
R1609 T1836 T1816 conj known,shown
R1610 T1837 T1836 prep about,known
R1611 T1868 T1865 pobj level,on
R1612 T1838 T1839 poss its,regulation
R1613 T1839 T1837 pobj regulation,about
R1614 T1840 T1839 punct (,regulation
R1615 T1869 T1868 punct (,level
R1616 T1841 T1839 appos "4,29,32",regulation
R1617 T1842 T1839 punct ),regulation
R1618 T1843 T1816 punct .,shown
R1619 T1870 T1868 appos 33,level
R1620 T1871 T1868 punct ),level
R1621 T1872 T1864 punct .,analyzed
R1622 T1873 T1881 mark Since,analyzed
R1623 T1940 T1938 dobj transcription,mediated
R1624 T1941 T1932 punct .,identified
R1626 T1874 T1876 det the,promoter
R1627 T1943 T1944 compound T,cells
R1628 T1944 T1942 pobj cells,In
R1629 T1875 T1876 compound A3G,promoter
R1630 T1876 T1881 nsubj promoter,analyzed
R1631 T1877 T1881 aux has,analyzed
R1633 T1878 T1881 neg not,analyzed
R1637 T1879 T1881 auxpass been,analyzed
R1640 T1880 T1881 advmod systematically,analyzed
R1644 T1881 T1887 advcl analyzed,was
R1648 T1882 T1883 advmod so,far
R1652 T1883 T1881 advmod far,analyzed
R1655 T1884 T1887 punct ",",was
R1662 T1885 T1886 poss our,aim
R1667 T1886 T1887 nsubj aim,was
R1668 T1887 T1887 ROOT was,was
R1670 T1888 T1889 aux to,clone
R1673 T1889 T1887 xcomp clone,was
R1677 T1890 T1892 det the,promoter
R1680 T1891 T1892 compound A3G,promoter
R1684 T1892 T1889 dobj promoter,clone
R1685 T1893 T1889 cc and,clone
R1686 T1894 T1889 conj characterize,clone
R1687 T1895 T1896 poss its,regulation
R1688 T1896 T1894 dobj regulation,characterize
R1689 T1897 T1896 prep in,regulation
R1690 T1898 T1899 compound T,cells
R1691 T1899 T1897 pobj cells,in
R1692 T1900 T1887 punct .,was
R1693 T1901 T1906 prep In,observed
R1694 T1902 T1903 poss our,study
R1695 T1903 T1901 pobj study,In
R1696 T1904 T1906 punct ",",observed
R1697 T1905 T1906 nsubj we,observed
R1698 T1906 T1906 ROOT observed,observed
R1699 T1907 T1909 mark that,uses
R1700 T1908 T1909 nsubj A3G,uses
R1701 T1909 T1906 ccomp uses,observed
R1702 T1910 T1913 amod multiple,sites
R1703 T1911 T1912 amod transcriptional,start
R1704 T1912 T1913 compound start,sites
R1705 T1913 T1909 dobj sites,uses
R1706 T1914 T1915 punct (,TSS
R1707 T1915 T1909 npadvmod TSS,uses
R1710 T1916 T1915 punct ),TSS
R1712 T1917 T1906 punct .,observed
R1713 T1918 T1932 prep By,identified
R1714 T1919 T1918 pcomp generating,By
R1716 T1920 T1921 det a,series
R1717 T1921 T1919 dobj series,generating
R1721 T1922 T1921 prep of,series
R1724 T1923 T1925 nummod 5,deletions
R1726 T1924 T1925 nummod ′,deletions
R1731 T1925 T1922 pobj deletions,of
R1733 T1926 T1925 prep of,deletions
R1735 T1927 T1929 det the,promoter
R1738 T1928 T1929 compound A3G,promoter
R1739 T1929 T1926 pobj promoter,of
R1743 T1930 T1932 punct ",",identified
R1746 T1931 T1932 nsubj we,identified
R1747 T1932 T1932 ROOT identified,identified
R1748 T1933 T1936 det a,region
R1749 T1934 T1936 nummod 180,region
R1750 T1935 T1936 compound bp,region
R1751 T1936 T1932 dobj region,identified
R1752 T1937 T1938 nsubj that,mediated
R1753 T1938 T1936 relcl mediated,region
R1754 T1939 T1940 amod basal,transcription

sentences

Id Subject Object Predicate Lexical cue
T860 46-186 Sentence denotes A3G has been shown to be expressed in T cells, a relevant cell target for HIV-1 in vivo, but little is known about its regulation (4,29,32).
T861 187-343 Sentence denotes There is a report describing that mitogenic stimulation of T cells upregulates A3G mRNA levels, but this was not analyzed on the transcriptional level (33).
T862 344-493 Sentence denotes Since the A3G promoter has not been systematically analyzed so far, our aim was to clone the A3G promoter and characterize its regulation in T cells.
T863 494-577 Sentence denotes In our study, we observed that A3G uses multiple transcriptional start sites (TSS).
T864 578-702 Sentence denotes By generating a series of 5′ deletions of the A3G promoter, we identified a 180 bp region that mediated basal transcription.
T24 46-186 Sentence denotes A3G has been shown to be expressed in T cells, a relevant cell target for HIV-1 in vivo, but little is known about its regulation (4,29,32).
T25 187-343 Sentence denotes There is a report describing that mitogenic stimulation of T cells upregulates A3G mRNA levels, but this was not analyzed on the transcriptional level (33).
T26 344-493 Sentence denotes Since the A3G promoter has not been systematically analyzed so far, our aim was to clone the A3G promoter and characterize its regulation in T cells.
T27 494-577 Sentence denotes In our study, we observed that A3G uses multiple transcriptional start sites (TSS).
T28 578-702 Sentence denotes By generating a series of 5′ deletions of the A3G promoter, we identified a 180 bp region that mediated basal transcription.

2_test

Id Subject Object Predicate Lexical cue
17517765-16699599-77155593 38-40 16699599 denotes 30
17517765-17166910-77155594 41-43 17166910 denotes 31
17517765-12167863-77155595 177-178 12167863 denotes 4
17517765-15152192-77155596 179-181 15152192 denotes 29
17517765-11863358-77155597 182-184 11863358 denotes 32
17517765-15297452-77155598 339-341 15297452 denotes 33

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1224 0-3 CC denotes and
T1225 4-11 NN denotes storage
T1226 12-14 IN denotes of
T1227 15-30 JJ denotes non-translating
T1228 31-36 NN denotes mRNAs
T1229 37-38 -LRB- denotes (
T1230 38-43 CD denotes 30,31
T1231 43-44 -RRB- denotes )
T1232 46-49 NN denotes A3G
T1233 50-53 VB denotes has
T1234 54-58 VB denotes been
T1235 59-64 VB denotes shown
T1236 65-67 TO denotes to
T1237 68-70 VB denotes be
T1238 71-80 VB denotes expressed
T1239 81-83 IN denotes in
T1240 84-85 NN denotes T
T1241 86-91 NN denotes cells
T1242 91-92 -COMMA- denotes ,
T1243 93-94 DT denotes a
T1244 95-103 JJ denotes relevant
T1245 104-108 NN denotes cell
T1246 109-115 NN denotes target
T1247 116-119 IN denotes for
T1248 120-125 NN denotes HIV-1
T1249 126-128 FW denotes in
T1250 129-133 FW denotes vivo
T1251 133-134 -COMMA- denotes ,
T1252 135-138 CC denotes but
T1253 139-145 JJ denotes little
T1254 146-148 VB denotes is
T1255 149-154 VB denotes known
T1256 155-160 IN denotes about
T1257 161-164 PRP-DOLLAR- denotes its
T1258 165-175 NN denotes regulation
T1259 176-177 -LRB- denotes (
T1260 177-184 CD denotes 4,29,32
T1261 184-185 -RRB- denotes )
T1262 187-192 EX denotes There
T1263 193-195 VB denotes is
T1264 196-197 DT denotes a
T1265 198-204 NN denotes report
T1266 205-215 VB denotes describing
T1267 216-220 IN denotes that
T1268 221-230 JJ denotes mitogenic
T1269 231-242 NN denotes stimulation
T1270 243-245 IN denotes of
T1271 246-247 NN denotes T
T1272 248-253 NN denotes cells
T1273 254-265 VB denotes upregulates
T1274 266-269 NN denotes A3G
T1275 270-274 NN denotes mRNA
T1276 275-281 NN denotes levels
T1277 281-282 -COMMA- denotes ,
T1278 283-286 CC denotes but
T1279 287-291 DT denotes this
T1280 292-295 VB denotes was
T1281 296-299 RB denotes not
T1282 300-308 VB denotes analyzed
T1283 309-311 IN denotes on
T1284 312-315 DT denotes the
T1285 316-331 JJ denotes transcriptional
T1286 332-337 NN denotes level
T1287 338-339 -LRB- denotes (
T1288 339-341 CD denotes 33
T1289 341-342 -RRB- denotes )
T1290 344-349 IN denotes Since
T1291 350-353 DT denotes the
T1292 354-357 NN denotes A3G
T1293 358-366 NN denotes promoter
T1294 367-370 VB denotes has
T1295 371-374 RB denotes not
T1296 375-379 VB denotes been
T1297 380-394 RB denotes systematically
T1298 395-403 VB denotes analyzed
T1299 404-406 RB denotes so
T1300 407-410 RB denotes far
T1301 410-411 -COMMA- denotes ,
T1302 412-415 PRP-DOLLAR- denotes our
T1303 416-419 NN denotes aim
T1304 420-423 VB denotes was
T1305 424-426 TO denotes to
T1306 427-432 VB denotes clone
T1307 433-436 DT denotes the
T1308 437-440 NN denotes A3G
T1309 441-449 NN denotes promoter
T1310 450-453 CC denotes and
T1311 454-466 VB denotes characterize
T1312 467-470 PRP-DOLLAR- denotes its
T1313 471-481 NN denotes regulation
T1314 482-484 IN denotes in
T1315 485-486 NN denotes T
T1316 487-492 NN denotes cells
T1317 494-496 IN denotes In
T1318 497-500 PRP-DOLLAR- denotes our
T1319 501-506 NN denotes study
T1320 506-507 -COMMA- denotes ,
T1321 508-510 PRP denotes we
T1322 511-519 VB denotes observed
T1323 520-524 IN denotes that
T1324 525-528 NN denotes A3G
T1325 529-533 VB denotes uses
T1326 534-542 JJ denotes multiple
T1327 543-558 JJ denotes transcriptional
T1328 559-564 NN denotes start
T1329 565-570 NN denotes sites
T1330 571-572 -LRB- denotes (
T1331 572-575 NN denotes TSS
T1332 575-576 -RRB- denotes )
T1333 578-580 IN denotes By
T1334 581-591 VB denotes generating
T1335 592-593 DT denotes a
T1336 594-600 NN denotes series
T1337 601-603 IN denotes of
T1338 604-606 CD denotes 5′
T1339 607-616 NN denotes deletions
T1340 617-619 IN denotes of
T1341 620-623 DT denotes the
T1342 624-627 NN denotes A3G
T1343 628-636 NN denotes promoter
T1344 636-637 -COMMA- denotes ,
T1345 638-640 PRP denotes we
T1346 641-651 VB denotes identified
T1347 652-653 DT denotes a
T1348 654-660 NN denotes 180 bp
T1349 661-667 NN denotes region
T1350 668-672 IN denotes that
T1351 673-681 VB denotes mediated
T1352 682-687 JJ denotes basal
T1353 688-701 NN denotes transcription
T1354 703-705 IN denotes In
T1355 706-707 NN denotes T
T1356 708-713 NN denotes cells
T1357 713-714 -COMMA- denotes ,
T1358 715-730 JJ denotes transcriptional
R1013 T1224 T1226 arg1Of and,of
R1014 T1225 T1224 arg2Of storage,and
R1015 T1228 T1226 arg2Of mRNAs,of
R1016 T1228 T1227 arg1Of mRNAs,non-translating
R1017 T1228 T1229 arg1Of mRNAs,(
R1018 T1230 T1229 arg2Of "30,31",(
R1019 T1231 T1229 arg3Of ),(
R1020 T1232 T1233 arg1Of A3G,has
R1021 T1232 T1234 arg1Of A3G,been
R1022 T1232 T1235 arg2Of A3G,shown
R1023 T1232 T1237 arg1Of A3G,be
R1024 T1232 T1238 arg2Of A3G,expressed
R1025 T1235 T1233 arg2Of shown,has
R1026 T1235 T1234 arg2Of shown,been
R1027 T1235 T1252 arg1Of shown,but
R1028 T1238 T1235 arg3Of expressed,shown
R1029 T1238 T1236 arg1Of expressed,to
R1030 T1238 T1237 arg2Of expressed,be
R1031 T1238 T1239 arg1Of expressed,in
R1032 T1241 T1239 arg2Of cells,in
R1033 T1241 T1240 arg1Of cells,T
R1034 T1241 T1242 arg1Of cells,","
R1035 T1246 T1242 arg2Of target,","
R1036 T1246 T1243 arg1Of target,a
R1037 T1246 T1244 arg1Of target,relevant
R1038 T1246 T1245 arg1Of target,cell
R1039 T1246 T1247 arg1Of target,for
R1040 T1248 T1247 arg2Of HIV-1,for
R1041 T1248 T1250 arg1Of HIV-1,vivo
R1042 T1250 T1249 arg1Of vivo,in
R1043 T1252 T1251 arg1Of but,","
R1044 T1253 T1254 arg1Of little,is
R1045 T1253 T1255 arg2Of little,known
R1046 T1255 T1252 arg2Of known,but
R1047 T1255 T1254 arg2Of known,is
R1048 T1255 T1256 arg1Of known,about
R1049 T1258 T1256 arg2Of regulation,about
R1050 T1258 T1257 arg1Of regulation,its
R1051 T1258 T1259 arg1Of regulation,(
R1052 T1260 T1259 arg2Of "4,29,32",(
R1053 T1261 T1259 arg3Of ),(
R1054 T1262 T1263 arg1Of There,is
R1055 T1263 T1266 modOf is,describing
R1056 T1263 T1278 arg1Of is,but
R1057 T1265 T1264 arg1Of report,a
R1058 T1265 T1266 arg1Of report,describing
R1059 T1269 T1266 arg2Of stimulation,describing
R1060 T1269 T1267 arg1Of stimulation,that
R1061 T1269 T1268 arg1Of stimulation,mitogenic
R1062 T1269 T1270 arg1Of stimulation,of
R1063 T1272 T1270 arg2Of cells,of
R1064 T1272 T1271 arg1Of cells,T
R1065 T1276 T1263 arg2Of levels,is
R1066 T1276 T1273 arg1Of levels,upregulates
R1067 T1276 T1274 arg1Of levels,A3G
R1068 T1276 T1275 arg1Of levels,mRNA
R1069 T1278 T1277 arg1Of but,","
R1070 T1279 T1280 arg1Of this,was
R1071 T1279 T1282 arg2Of this,analyzed
R1072 T1282 T1278 arg2Of analyzed,but
R1073 T1282 T1280 arg2Of analyzed,was
R1074 T1282 T1281 arg1Of analyzed,not
R1075 T1282 T1283 arg1Of analyzed,on
R1076 T1286 T1283 arg2Of level,on
R1077 T1286 T1284 arg1Of level,the
R1078 T1286 T1285 arg1Of level,transcriptional
R1079 T1286 T1287 arg1Of level,(
R1080 T1288 T1287 arg2Of 33,(
R1081 T1289 T1287 arg3Of ),(
R1082 T1293 T1291 arg1Of promoter,the
R1083 T1293 T1292 arg1Of promoter,A3G
R1084 T1293 T1294 arg1Of promoter,has
R1085 T1293 T1296 arg1Of promoter,been
R1086 T1293 T1298 arg2Of promoter,analyzed
R1087 T1298 T1290 arg2Of analyzed,Since
R1088 T1298 T1294 arg2Of analyzed,has
R1089 T1298 T1295 arg1Of analyzed,not
R1090 T1298 T1296 arg2Of analyzed,been
R1091 T1298 T1297 arg1Of analyzed,systematically
R1092 T1298 T1300 arg1Of analyzed,far
R1093 T1300 T1299 arg1Of far,so
R1094 T1303 T1302 arg1Of aim,our
R1095 T1303 T1304 arg1Of aim,was
R1096 T1304 T1290 arg1Of was,Since
R1097 T1304 T1301 arg1Of was,","
R1098 T1306 T1310 arg1Of clone,and
R1099 T1309 T1306 arg2Of promoter,clone
R1100 T1309 T1307 arg1Of promoter,the
R1101 T1309 T1308 arg1Of promoter,A3G
R1102 T1310 T1304 arg2Of and,was
R1103 T1310 T1305 arg1Of and,to
R1104 T1311 T1310 arg2Of characterize,and
R1105 T1313 T1311 arg2Of regulation,characterize
R1106 T1313 T1312 arg1Of regulation,its
R1107 T1313 T1314 arg1Of regulation,in
R1108 T1316 T1314 arg2Of cells,in
R1109 T1316 T1315 arg1Of cells,T
R1110 T1319 T1317 arg2Of study,In
R1111 T1319 T1318 arg1Of study,our
R1112 T1321 T1322 arg1Of we,observed
R1113 T1322 T1317 arg1Of observed,In
R1114 T1322 T1320 arg1Of observed,","
R1115 T1324 T1325 arg1Of A3G,uses
R1116 T1325 T1322 arg2Of uses,observed
R1117 T1325 T1323 arg1Of uses,that
R1118 T1329 T1325 arg2Of sites,uses
R1119 T1329 T1326 arg1Of sites,multiple
R1120 T1329 T1327 arg1Of sites,transcriptional
R1121 T1329 T1328 arg1Of sites,start
R1122 T1329 T1330 arg1Of sites,(
R1123 T1331 T1330 arg2Of TSS,(
R1124 T1332 T1330 arg3Of ),(
R1125 T1334 T1333 arg2Of generating,By
R1126 T1336 T1334 arg2Of series,generating
R1127 T1336 T1335 arg1Of series,a
R1128 T1336 T1337 arg1Of series,of
R1129 T1339 T1337 arg2Of deletions,of
R1130 T1339 T1338 arg1Of deletions,5′
R1131 T1339 T1340 arg1Of deletions,of
R1132 T1343 T1340 arg2Of promoter,of
R1133 T1343 T1341 arg1Of promoter,the
R1134 T1343 T1342 arg1Of promoter,A3G
R1135 T1345 T1334 arg1Of we,generating
R1136 T1345 T1346 arg1Of we,identified
R1137 T1346 T1333 arg1Of identified,By
R1138 T1346 T1344 arg1Of identified,","
R1139 T1353 T1346 arg2Of transcription,identified
R1140 T1353 T1347 arg1Of transcription,a
R1141 T1353 T1348 arg1Of transcription,180 bp
R1142 T1353 T1349 arg1Of transcription,region
R1143 T1353 T1350 arg1Of transcription,that
R1144 T1353 T1351 arg2Of transcription,mediated
R1145 T1353 T1352 arg1Of transcription,basal
R1146 T1356 T1354 arg2Of cells,In
R1147 T1356 T1355 arg1Of cells,T

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T1397 161-164 Anaphor denotes its
T1398 46-49 Antecedent denotes A3G
T1399 467-470 Anaphor denotes its
T1400 441-449 Antecedent denotes promoter
R1192 T1397 T1398 boundBy its,A3G
R1193 T1399 T1400 boundBy its,promoter

events-check-again

Id Subject Object Predicate Lexical cue
T2263 46-49 Protein denotes A3G
T2264 71-80 Gene_expression denotes expressed
T2265 165-175 Regulation denotes regulation
T2266 254-265 Positive_regulation denotes upregulates
T2267 266-269 Protein denotes A3G
T2268 270-281 Gene_expression denotes mRNA levels
T2269 354-357 Protein denotes A3G
T2270 437-440 Protein denotes A3G
T2271 441-449 Entity denotes promoter
T2272 471-481 Regulation denotes regulation
T2273 525-528 Protein denotes A3G
T2274 624-627 Protein denotes A3G
R1845 T2263 T2264 themeOf A3G,expressed
R1846 T2263 T2265 themeOf A3G,regulation
R1848 T2267 T2268 themeOf A3G,mRNA levels
R1849 T2268 T2266 themeOf mRNA levels,upregulates
R1851 T2271 T2272 themeOf promoter,regulation
R1852 T2271 T2270 partOf promoter,A3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2295 46-49 Protein denotes A3G
T2296 71-80 Gene_expression denotes expressed
T2297 165-175 Regulation denotes regulation
T2298 266-274 Protein denotes A3G mRNA
T2299 254-265 Positive_regulation denotes upregulates
T2300 354-366 Protein denotes A3G promoter
T2301 437-449 Protein denotes A3G promoter
T2302 471-481 Regulation denotes regulation
T2303 624-636 Protein denotes A3G promoter
R1847 T2295 T2296 themeOf A3G,expressed
R1850 T2295 T2297 themeOf A3G,regulation
R1853 T2298 T2299 themeOf A3G mRNA,upregulates
R1857 T2301 T2302 themeOf A3G promoter,regulation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T830 46-49 Protein denotes A3G
T831 71-80 Gene_expression denotes expressed
T832 165-175 Regulation denotes regulation
T833 254-265 Positive_regulation denotes upregulates
T834 266-269 Protein denotes A3G
T835 270-281 Gene_expression denotes mRNA levels
T836 354-357 Protein denotes A3G
T837 437-440 Protein denotes A3G
T838 441-449 Entity denotes promoter
T839 471-481 Regulation denotes regulation
T840 525-528 Protein denotes A3G
T841 624-627 Protein denotes A3G
R647 T830 T831 themeOf A3G,expressed
R648 T830 T832 themeOf A3G,regulation
R649 T834 T835 themeOf A3G,mRNA levels
R650 T835 T833 themeOf mRNA levels,upregulates
R651 T838 T839 themeOf promoter,regulation
R652 T838 T837 partOf promoter,A3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1419 46-49 Q9HC16 denotes A3G
T1420 266-269 Q9HC16 denotes A3G
T1421 354-357 Q9HC16 denotes A3G
T1422 416-419 P26358 denotes aim
T1423 437-440 Q9HC16 denotes A3G
T1424 525-528 Q9HC16 denotes A3G
T1425 624-627 Q9HC16 denotes A3G