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PMC:1920263 / 33366-33538 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21168 0-2 IN denotes As
T21169 3-11 JJ denotes positive
T21170 12-20 NNS denotes controls
T21171 20-21 , denotes ,
T21172 22-25 DT denotes the
T21173 26-33 JJ denotes sheared
T21174 34-37 CC denotes and
T21175 38-50 JJ denotes cross-linked
T21176 51-54 NN denotes DNA
T21177 55-61 IN denotes before
T21178 62-65 DT denotes the
T21179 66-85 NN denotes immunoprecipitation
T21180 86-90 NN denotes step
T21181 91-92 -LRB- denotes (
T21182 92-97 NN denotes input
T21183 97-98 -RRB- denotes )
T21184 99-101 CC denotes or
T21185 102-103 DT denotes a
T21186 104-111 JJ denotes plasmid
T21187 112-120 VBG denotes carrying
T21188 121-124 DT denotes the
T21189 125-131 NN denotes target
T21190 132-140 NN denotes sequence
T21191 141-142 -LRB- denotes (
T21192 142-149 NN denotes plasmid
T21193 149-150 -RRB- denotes )
T21194 151-154 VBD denotes was
T21195 155-159 VBN denotes used
T21196 160-162 IN denotes as
T21197 163-171 NN denotes template
T21198 171-172 . denotes .
R16965 T21168 T21195 prep As,used
R16966 T21169 T21170 amod positive,controls
R16967 T21170 T21168 pobj controls,As
R16968 T21171 T21195 punct ",",used
R16969 T21172 T21176 det the,DNA
R16970 T21173 T21176 amod sheared,DNA
R16971 T21174 T21173 cc and,sheared
R16972 T21175 T21173 conj cross-linked,sheared
R16973 T21176 T21195 nsubjpass DNA,used
R16974 T21177 T21176 prep before,DNA
R16975 T21178 T21180 det the,step
R16976 T21179 T21180 compound immunoprecipitation,step
R16977 T21180 T21177 pobj step,before
R16978 T21181 T21180 punct (,step
R16979 T21182 T21180 appos input,step
R16980 T21183 T21180 punct ),step
R16981 T21184 T21180 cc or,step
R16982 T21185 T21186 det a,plasmid
R16983 T21186 T21176 appos plasmid,DNA
R16984 T21187 T21186 acl carrying,plasmid
R16985 T21188 T21190 det the,sequence
R16986 T21189 T21190 compound target,sequence
R16987 T21190 T21187 dobj sequence,carrying
R16988 T21191 T21190 punct (,sequence
R16989 T21192 T21190 appos plasmid,sequence
R16990 T21193 T21190 punct ),sequence
R16991 T21194 T21195 auxpass was,used
R16992 T21195 T21195 ROOT used,used
R16993 T21196 T21195 prep as,used
R16994 T21197 T21196 pobj template,as
R16995 T21198 T21195 punct .,used

sentences

Id Subject Object Predicate Lexical cue
T20707 0-172 Sentence denotes As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template.
T233 0-172 Sentence denotes As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20906 0-2 IN denotes As
T20907 3-11 JJ denotes positive
T20908 12-20 NN denotes controls
T20909 20-21 -COMMA- denotes ,
T20910 22-25 DT denotes the
T20911 26-33 JJ denotes sheared
T20912 34-37 CC denotes and
T20913 38-50 JJ denotes cross-linked
T20914 51-54 NN denotes DNA
T20915 55-61 IN denotes before
T20916 62-65 DT denotes the
T20917 66-85 NN denotes immunoprecipitation
T20918 86-90 NN denotes step
T20919 91-92 -LRB- denotes (
T20920 92-97 NN denotes input
T20921 97-98 -RRB- denotes )
T20922 99-101 CC denotes or
T20923 102-103 DT denotes a
T20924 104-111 NN denotes plasmid
T20925 112-120 VB denotes carrying
T20926 121-124 DT denotes the
T20927 125-131 NN denotes target
T20928 132-140 NN denotes sequence
T20929 141-142 -LRB- denotes (
T20930 142-149 NN denotes plasmid
T20931 149-150 -RRB- denotes )
T20932 151-154 VB denotes was
T20933 155-159 VB denotes used
T20934 160-162 IN denotes as
T20935 163-171 NN denotes template
R16723 T20908 T20906 arg2Of controls,As
R16724 T20908 T20907 arg1Of controls,positive
R16725 T20911 T20912 arg1Of sheared,and
R16726 T20913 T20912 arg2Of cross-linked,and
R16727 T20914 T20910 arg1Of DNA,the
R16728 T20914 T20911 arg1Of DNA,sheared
R16729 T20914 T20913 arg1Of DNA,cross-linked
R16730 T20914 T20915 arg1Of DNA,before
R16731 T20914 T20932 arg1Of DNA,was
R16732 T20914 T20933 arg2Of DNA,used
R16733 T20918 T20916 arg1Of step,the
R16734 T20918 T20917 arg1Of step,immunoprecipitation
R16735 T20918 T20919 arg1Of step,(
R16736 T20918 T20922 arg1Of step,or
R16737 T20920 T20919 arg2Of input,(
R16738 T20921 T20919 arg3Of ),(
R16739 T20922 T20915 arg2Of or,before
R16740 T20924 T20922 arg2Of plasmid,or
R16741 T20924 T20923 arg1Of plasmid,a
R16742 T20924 T20925 arg1Of plasmid,carrying
R16743 T20928 T20925 arg2Of sequence,carrying
R16744 T20928 T20926 arg1Of sequence,the
R16745 T20928 T20927 arg1Of sequence,target
R16746 T20928 T20929 arg1Of sequence,(
R16747 T20930 T20929 arg2Of plasmid,(
R16748 T20931 T20929 arg3Of ),(
R16749 T20933 T20906 arg1Of used,As
R16750 T20933 T20909 arg1Of used,","
R16751 T20933 T20932 arg2Of used,was
R16752 T20933 T20934 arg1Of used,as
R16753 T20935 T20934 arg2Of template,as