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PMC:1920263 / 32355-33538 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T20657 10-13 Protein denotes Sp1
T20658 18-21 Protein denotes Sp3
T20659 22-26 Binding denotes bind
T20660 34-40 Entity denotes GC-box
T20661 56-59 Protein denotes A3G
T20662 153-156 Protein denotes Sp1
T20663 279-282 Protein denotes A3G
T20664 297-300 Protein denotes Sp1
T20665 301-302 Protein denotes 3
T20666 311-314 Protein denotes Sp1
T20667 315-319 Protein denotes 3mut
T20668 496-499 Protein denotes Sp1
T20669 500-501 Protein denotes 3
T20670 543-546 Protein denotes Sp1
T20671 547-551 Protein denotes 3mut
T20672 598-601 Protein denotes Sp1
T20673 607-610 Protein denotes Sp3
T20674 890-893 Protein denotes Sp1
T20675 895-898 Protein denotes Sp3
T20676 902-907 Protein denotes actin
T20677 943-946 Protein denotes A3G
T20678 977-980 Protein denotes A3G
R16530 T20657 T20659 themeOf Sp1,bind
R16531 T20658 T20659 themeOf Sp3,bind
R16532 T20660 T20659 themeOf GC-box,bind
R16533 T20660 T20661 partOf GC-box,A3G

GO-CC

Id Subject Object Predicate Lexical cue
T21213 102-107 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21214 825-830 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T21215 322-343 http://purl.obolibrary.org/obo/GO_0001114 denotes Protein–DNA complexes
T21216 322-343 http://purl.obolibrary.org/obo/GO_0032993 denotes Protein–DNA complexes
T21217 322-343 http://purl.obolibrary.org/obo/GO_0097522 denotes Protein–DNA complexes
T21218 620-630 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T21219 871-881 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T21220 620-630 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T21221 871-881 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies

GO-MF

Id Subject Object Predicate Lexical cue
T21199 247-249 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T21200 247-249 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T21201 247-249 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T21202 247-249 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T21203 247-249 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T21204 247-249 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T21205 247-249 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T21206 247-249 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T21207 247-249 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T21208 247-249 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T21209 247-249 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T21210 247-249 http://purl.obolibrary.org/obo/GO_0061658 denotes E2
T21211 620-630 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T21212 871-881 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-BP

Id Subject Object Predicate Lexical cue
T20708 247-249 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T20709 247-249 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T20710 247-249 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T20711 247-249 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T20712 247-249 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T20713 247-249 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T20714 247-249 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T20715 247-249 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T20716 247-249 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T20717 247-249 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T20718 247-249 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T20719 247-249 http://purl.obolibrary.org/obo/GO_0061658 denotes E2

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20957 10-13 CD denotes Sp1
T20958 14-17 CC denotes and
T20959 18-21 JJ denotes Sp3
T20960 22-26 NN denotes bind
T20961 27-29 TO denotes to
T20962 30-33 DT denotes the
T20963 34-40 NNP denotes GC-box
T20964 41-48 NN denotes present
T20965 49-51 IN denotes in
T20966 52-55 DT denotes the
T20967 56-59 NNP denotes A3G
T20968 60-68 NN denotes promoter
T20969 68-69 . denotes .
T20970 70-71 -LRB- denotes (
T20971 71-72 NNP denotes A
T20972 72-73 -RRB- denotes )
T20973 74-81 NNP denotes Nuclear
T20974 82-90 NNS denotes extracts
T20975 91-93 IN denotes of
T20976 94-96 CD denotes A3
T20977 96-99 CD denotes .01
T20978 100-101 NNP denotes T
T20979 102-107 NNS denotes cells
T20980 108-112 VBD denotes were
T20981 113-122 VBN denotes incubated
T20982 123-127 IN denotes with
T20983 128-129 DT denotes a
T20984 130-141 JJ denotes 32P-labeled
T20985 142-152 JJ denotes commercial
T20986 153-156 JJ denotes Sp1
T20987 157-172 NN denotes oligonucleotide
T20988 173-178 NN denotes probe
T20989 179-180 -LRB- denotes (
T20990 180-187 NNS denotes Sp1cons
T20991 187-188 -RRB- denotes )
T20992 189-191 CC denotes or
T20993 192-199 VBN denotes labeled
T20994 200-206 NNS denotes probes
T20995 207-217 RB denotes homologous
T20996 218-220 TO denotes to
T20997 221-224 DT denotes the
T20998 225-235 JJ denotes unmodified
T20999 236-238 CC denotes or
T21000 239-246 VBN denotes mutated
T21001 247-249 CD denotes E2
T21002 250-256 NN denotes region
T21003 257-258 -LRB- denotes (
T21004 258-261 VB denotes see
T21005 262-268 NN denotes Figure
T21006 269-270 CD denotes 1
T21007 270-271 -RRB- denotes )
T21008 272-274 IN denotes of
T21009 275-278 DT denotes the
T21010 279-282 NNP denotes A3G
T21011 283-291 NN denotes promoter
T21012 292-293 -LRB- denotes (
T21013 293-300 JJ denotes APO-Sp1
T21014 300-301 NN denotes /
T21015 301-302 CD denotes 3
T21016 303-306 CC denotes and
T21017 307-314 NNP denotes APO-Sp1
T21018 314-315 VBD denotes /
T21019 315-319 CD denotes 3mut
T21020 319-320 -RRB- denotes )
T21021 320-321 . denotes .
T21022 322-329 NN denotes Protein
T21023 330-333 NNP denotes DNA
T21024 334-343 NNS denotes complexes
T21025 344-348 VBD denotes were
T21026 349-358 VBN denotes separated
T21027 359-361 IN denotes by
T21028 362-376 NN denotes polyacrylamide
T21029 377-392 NN denotes electrophoresis
T21030 393-396 CC denotes and
T21031 397-405 VBN denotes detected
T21032 406-408 IN denotes by
T21033 409-424 NN denotes autoradiography
T21034 424-425 . denotes .
T21035 426-430 NNP denotes EMSA
T21036 431-434 VBD denotes was
T21037 435-444 VBN denotes performed
T21038 445-449 IN denotes with
T21039 450-451 DT denotes a
T21040 452-453 CD denotes 1
T21041 453-454 : denotes -
T21042 455-457 CC denotes or
T21043 458-465 JJ denotes 30-fold
T21044 466-471 NN denotes molar
T21045 472-478 NN denotes excess
T21046 479-481 IN denotes of
T21047 482-491 JJ denotes unlabeled
T21048 492-499 JJ denotes APO-Sp1
T21049 499-500 NN denotes /
T21050 500-501 CD denotes 3
T21051 502-507 NN denotes probe
T21052 508-509 -LRB- denotes (
T21053 509-519 NN denotes competitor
T21054 519-520 , denotes ,
T21055 521-526 NNS denotes lanes
T21056 527-528 CD denotes 6
T21057 529-532 CC denotes and
T21058 533-534 CD denotes 7
T21059 534-535 -RRB- denotes )
T21060 536-538 CC denotes or
T21061 539-546 JJ denotes APO-Sp1
T21062 546-547 NN denotes /
T21063 547-551 CD denotes 3mut
T21064 552-557 NN denotes probe
T21065 558-559 -LRB- denotes (
T21066 559-569 NN denotes competitor
T21067 570-574 NN denotes mut.
T21068 574-575 , denotes ,
T21069 576-581 NNS denotes lanes
T21070 582-584 CD denotes 12
T21071 585-588 CC denotes and
T21072 589-591 CD denotes 13
T21073 591-592 -RRB- denotes )
T21074 592-593 . denotes .
T21075 594-595 -LRB- denotes (
T21076 595-596 NNP denotes B
T21077 596-597 -RRB- denotes )
T21078 598-601 SYM denotes Sp1
T21079 601-602 : denotes -
T21080 603-606 CC denotes and
T21081 607-619 JJ denotes Sp3-specific
T21082 620-630 NNS denotes antibodies
T21083 631-635 VBD denotes were
T21084 636-641 VBN denotes added
T21085 642-644 TO denotes to
T21086 645-648 DT denotes the
T21087 649-653 NNP denotes EMSA
T21088 654-663 NNS denotes reactions
T21089 664-673 VBG denotes resulting
T21090 674-676 IN denotes in
T21091 677-678 DT denotes a
T21092 679-689 NN denotes supershift
T21093 690-691 -LRB- denotes (
T21094 691-693 FW denotes ss
T21095 693-694 -RRB- denotes )
T21096 695-697 IN denotes of
T21097 698-701 DT denotes the
T21098 702-712 JJ denotes respective
T21099 713-721 NN denotes antibody
T21100 722-729 NN denotes protein
T21101 730-735 NN denotes oligo
T21102 736-745 NNS denotes complexes
T21103 746-747 -LRB- denotes (
T21104 747-752 NNS denotes lanes
T21105 753-754 CD denotes 3
T21106 754-755 , denotes ,
T21107 756-757 CD denotes 4
T21108 757-758 , denotes ,
T21109 759-760 CD denotes 7
T21110 760-761 , denotes ,
T21111 762-763 CD denotes 8
T21112 763-764 , denotes ,
T21113 765-767 CD denotes 11
T21114 767-768 , denotes ,
T21115 769-771 CD denotes 12
T21116 771-772 -RRB- denotes )
T21117 772-773 . denotes .
T21118 774-775 -LRB- denotes (
T21119 775-776 NNP denotes C
T21120 776-777 -RRB- denotes )
T21121 778-782 NNP denotes ChIP
T21122 783-788 NN denotes assay
T21123 789-792 VBD denotes was
T21124 793-802 VBN denotes performed
T21125 803-807 IN denotes with
T21126 808-811 NNP denotes DNA
T21127 812-816 IN denotes from
T21128 817-819 NNP denotes A3
T21129 819-822 CD denotes .01
T21130 823-824 NNP denotes T
T21131 825-830 NNS denotes cells
T21132 830-831 . denotes .
T21133 832-851 NNP denotes Immunoprecipitation
T21134 852-855 VBD denotes was
T21135 856-865 VBN denotes performed
T21136 866-870 IN denotes with
T21137 871-881 NNS denotes antibodies
T21138 882-889 IN denotes against
T21139 890-893 NNP denotes Sp1
T21140 893-894 , denotes ,
T21141 895-898 NNP denotes Sp3
T21142 899-901 CC denotes or
T21143 902-907 NN denotes actin
T21144 907-908 . denotes .
T21145 909-912 NNP denotes PCR
T21146 913-919 NN denotes primer
T21147 920-925 NNS denotes pairs
T21148 926-934 JJ denotes specific
T21149 935-938 IN denotes for
T21150 939-942 DT denotes the
T21151 943-946 NNP denotes A3G
T21152 947-955 NN denotes promoter
T21153 956-957 -LRB- denotes (
T21154 957-962 JJ denotes upper
T21155 963-968 NN denotes panel
T21156 968-969 -RRB- denotes )
T21157 970-972 CC denotes or
T21158 973-976 DT denotes the
T21159 977-980 NNP denotes A3G
T21160 981-985 NN denotes gene
T21161 986-987 -LRB- denotes (
T21162 987-992 JJR denotes lower
T21163 993-998 NN denotes panel
T21164 998-999 -RRB- denotes )
T21165 1000-1004 VBD denotes were
T21166 1005-1009 VBN denotes used
T21167 1009-1010 . denotes .
T21168 1011-1013 IN denotes As
T21169 1014-1022 JJ denotes positive
T21170 1023-1031 NNS denotes controls
T21171 1031-1032 , denotes ,
T21172 1033-1036 DT denotes the
T21173 1037-1044 JJ denotes sheared
T21174 1045-1048 CC denotes and
T21175 1049-1061 JJ denotes cross-linked
T21176 1062-1065 NN denotes DNA
T21177 1066-1072 IN denotes before
T21178 1073-1076 DT denotes the
T21179 1077-1096 NN denotes immunoprecipitation
T21180 1097-1101 NN denotes step
T21181 1102-1103 -LRB- denotes (
T21182 1103-1108 NN denotes input
T21183 1108-1109 -RRB- denotes )
T21184 1110-1112 CC denotes or
T21185 1113-1114 DT denotes a
T21186 1115-1122 JJ denotes plasmid
T21187 1123-1131 VBG denotes carrying
T21188 1132-1135 DT denotes the
T21189 1136-1142 NN denotes target
T21190 1143-1151 NN denotes sequence
T21191 1152-1153 -LRB- denotes (
T21192 1153-1160 NN denotes plasmid
T21193 1160-1161 -RRB- denotes )
T21194 1162-1165 VBD denotes was
T21195 1166-1170 VBN denotes used
T21196 1171-1173 IN denotes as
T21197 1174-1182 NN denotes template
T21198 1182-1183 . denotes .
R16754 T20957 T20960 nummod Sp1,bind
R16755 T20958 T20957 cc and,Sp1
R16756 T20959 T20960 amod Sp3,bind
R16757 T20960 T20960 ROOT bind,bind
R16758 T20961 T20960 prep to,bind
R16759 T20962 T20964 det the,present
R16760 T20963 T20964 compound GC-box,present
R16761 T20964 T20961 pobj present,to
R16762 T20965 T20964 prep in,present
R16763 T20966 T20968 det the,promoter
R16764 T20967 T20968 compound A3G,promoter
R16765 T20968 T20965 pobj promoter,in
R16766 T20969 T20960 punct .,bind
R16767 T20970 T20974 punct (,extracts
R16768 T20971 T20974 nmod A,extracts
R16769 T20972 T20971 punct ),A
R16770 T20973 T20974 compound Nuclear,extracts
R16771 T20974 T20981 nsubjpass extracts,incubated
R16772 T20975 T20974 prep of,extracts
R16773 T20976 T20979 nummod A3,cells
R16774 T20977 T20979 nummod .01,cells
R16775 T20978 T20979 compound T,cells
R16776 T20979 T20975 pobj cells,of
R16777 T20980 T20981 auxpass were,incubated
R16778 T20981 T20981 ROOT incubated,incubated
R16779 T20982 T20981 prep with,incubated
R16780 T20983 T20988 det a,probe
R16781 T20984 T20988 amod 32P-labeled,probe
R16782 T20985 T20988 amod commercial,probe
R16783 T20986 T20988 nmod Sp1,probe
R16784 T20987 T20988 compound oligonucleotide,probe
R16785 T20988 T20982 pobj probe,with
R16786 T20989 T20990 punct (,Sp1cons
R16787 T20990 T20988 appos Sp1cons,probe
R16788 T20991 T20990 punct ),Sp1cons
R16789 T20992 T20990 cc or,Sp1cons
R16790 T20993 T20994 amod labeled,probes
R16791 T20994 T20990 conj probes,Sp1cons
R16792 T20995 T20994 amod homologous,probes
R16793 T20996 T20990 prep to,Sp1cons
R16794 T20997 T20998 det the,unmodified
R16795 T20998 T21002 amod unmodified,region
R16796 T20999 T20998 cc or,unmodified
R16797 T21000 T20998 conj mutated,unmodified
R16798 T21001 T21002 nummod E2,region
R16799 T21002 T20996 pobj region,to
R16800 T21003 T21004 punct (,see
R16801 T21004 T20990 parataxis see,Sp1cons
R16802 T21005 T21004 dobj Figure,see
R16803 T21006 T21005 nummod 1,Figure
R16804 T21007 T21004 punct ),see
R16805 T21008 T20990 prep of,Sp1cons
R16806 T21009 T21011 det the,promoter
R16807 T21010 T21011 compound A3G,promoter
R16808 T21011 T21008 pobj promoter,of
R16809 T21012 T21014 punct (,/
R16810 T21013 T21014 compound APO-Sp1,/
R16811 T21014 T21011 parataxis /,promoter
R16812 T21015 T21014 nummod 3,/
R16813 T21016 T21014 cc and,/
R16814 T21017 T21018 nsubj APO-Sp1,/
R16815 T21018 T21014 parataxis /,/
R16816 T21019 T21018 nummod 3mut,/
R16817 T21020 T21014 punct ),/
R16818 T21021 T20981 punct .,incubated
R16819 T21022 T21022 ROOT Protein,Protein
R16820 T21023 T21024 compound DNA,complexes
R16821 T21024 T21026 nsubjpass complexes,separated
R16822 T21025 T21026 auxpass were,separated
R16823 T21026 T21026 ROOT separated,separated
R16824 T21027 T21026 agent by,separated
R16825 T21028 T21029 compound polyacrylamide,electrophoresis
R16826 T21029 T21027 pobj electrophoresis,by
R16827 T21030 T21026 cc and,separated
R16828 T21031 T21026 conj detected,separated
R16829 T21032 T21031 agent by,detected
R16830 T21033 T21032 pobj autoradiography,by
R16831 T21034 T21026 punct .,separated
R16832 T21035 T21037 nsubjpass EMSA,performed
R16833 T21036 T21037 auxpass was,performed
R16834 T21037 T21037 ROOT performed,performed
R16835 T21038 T21037 prep with,performed
R16836 T21039 T21045 det a,excess
R16837 T21040 T21045 nummod 1,excess
R16838 T21041 T21040 punct -,1
R16839 T21042 T21040 cc or,1
R16840 T21043 T21040 conj 30-fold,1
R16841 T21044 T21045 compound molar,excess
R16842 T21045 T21038 pobj excess,with
R16843 T21046 T21045 prep of,excess
R16844 T21047 T21049 amod unlabeled,/
R16845 T21048 T21049 compound APO-Sp1,/
R16846 T21049 T21051 nmod /,probe
R16847 T21050 T21049 nummod 3,/
R16848 T21051 T21046 pobj probe,of
R16849 T21052 T21053 punct (,competitor
R16850 T21053 T21055 nsubj competitor,lanes
R16851 T21054 T21053 punct ",",competitor
R16852 T21055 T21045 relcl lanes,excess
R16853 T21056 T21055 nummod 6,lanes
R16854 T21057 T21056 cc and,6
R16855 T21058 T21056 conj 7,6
R16856 T21059 T21058 punct ),7
R16857 T21060 T21058 cc or,7
R16858 T21061 T21062 compound APO-Sp1,/
R16859 T21062 T21055 appos /,lanes
R16860 T21063 T21064 nummod 3mut,probe
R16861 T21064 T21055 appos probe,lanes
R16862 T21065 T21067 punct (,mut.
R16863 T21066 T21067 compound competitor,mut.
R16864 T21067 T21064 appos mut.,probe
R16865 T21068 T21067 punct ",",mut.
R16866 T21069 T21067 appos lanes,mut.
R16867 T21070 T21073 nmod 12,)
R16868 T21071 T21070 cc and,12
R16869 T21072 T21070 conj 13,12
R16870 T21073 T21067 punct ),mut.
R16871 T21074 T21037 punct .,performed
R16872 T21075 T21076 punct (,B
R16873 T21076 T21084 nsubjpass B,added
R16874 T21077 T21076 punct ),B
R16875 T21078 T21076 punct Sp1,B
R16876 T21079 T21078 punct -,Sp1
R16877 T21080 T21078 cc and,Sp1
R16878 T21081 T21082 amod Sp3-specific,antibodies
R16879 T21082 T21084 nsubjpass antibodies,added
R16880 T21083 T21084 auxpass were,added
R16881 T21084 T21084 ROOT added,added
R16882 T21085 T21084 prep to,added
R16883 T21086 T21088 det the,reactions
R16884 T21087 T21088 compound EMSA,reactions
R16885 T21088 T21085 pobj reactions,to
R16886 T21089 T21088 acl resulting,reactions
R16887 T21090 T21089 prep in,resulting
R16888 T21091 T21092 det a,supershift
R16889 T21092 T21090 pobj supershift,in
R16890 T21093 T21094 punct (,ss
R16891 T21094 T21092 appos ss,supershift
R16892 T21095 T21092 punct ),supershift
R16893 T21096 T21092 prep of,supershift
R16894 T21097 T21099 det the,antibody
R16895 T21098 T21099 amod respective,antibody
R16896 T21099 T21096 pobj antibody,of
R16897 T21100 T21102 nmod protein,complexes
R16898 T21101 T21102 compound oligo,complexes
R16899 T21102 T21085 pobj complexes,to
R16900 T21103 T21102 punct (,complexes
R16901 T21104 T21102 appos lanes,complexes
R16902 T21105 T21102 appos 3,complexes
R16903 T21106 T21105 punct ",",3
R16904 T21107 T21105 appos 4,3
R16905 T21108 T21105 punct ",",3
R16906 T21109 T21105 appos 7,3
R16907 T21110 T21109 punct ",",7
R16908 T21111 T21109 conj 8,7
R16909 T21112 T21111 punct ",",8
R16910 T21113 T21111 conj 11,8
R16911 T21114 T21111 punct ",",8
R16912 T21115 T21111 conj 12,8
R16913 T21116 T21111 punct ),8
R16914 T21117 T21084 punct .,added
R16915 T21118 T21124 punct (,performed
R16916 T21119 T21122 compound C,assay
R16917 T21120 T21121 punct ),ChIP
R16918 T21121 T21122 compound ChIP,assay
R16919 T21122 T21124 nsubjpass assay,performed
R16920 T21123 T21124 auxpass was,performed
R16921 T21124 T21124 ROOT performed,performed
R16922 T21125 T21124 prep with,performed
R16923 T21126 T21125 pobj DNA,with
R16924 T21127 T21126 prep from,DNA
R16925 T21128 T21127 pobj A3,from
R16926 T21129 T21131 nummod .01,cells
R16927 T21130 T21131 compound T,cells
R16928 T21131 T21125 pobj cells,with
R16929 T21132 T21124 punct .,performed
R16930 T21133 T21135 nsubjpass Immunoprecipitation,performed
R16931 T21134 T21135 auxpass was,performed
R16932 T21135 T21135 ROOT performed,performed
R16933 T21136 T21135 prep with,performed
R16934 T21137 T21136 pobj antibodies,with
R16935 T21138 T21135 prep against,performed
R16936 T21139 T21138 pobj Sp1,against
R16937 T21140 T21139 punct ",",Sp1
R16938 T21141 T21139 conj Sp3,Sp1
R16939 T21142 T21141 cc or,Sp3
R16940 T21143 T21141 conj actin,Sp3
R16941 T21144 T21135 punct .,performed
R16942 T21145 T21146 compound PCR,primer
R16943 T21146 T21147 compound primer,pairs
R16944 T21147 T21148 npadvmod pairs,specific
R16945 T21148 T21166 nsubjpass specific,used
R16946 T21149 T21148 prep for,specific
R16947 T21150 T21152 det the,promoter
R16948 T21151 T21152 compound A3G,promoter
R16949 T21152 T21149 pobj promoter,for
R16950 T21153 T21152 punct (,promoter
R16951 T21154 T21155 amod upper,panel
R16952 T21155 T21152 appos panel,promoter
R16953 T21156 T21152 punct ),promoter
R16954 T21157 T21152 cc or,promoter
R16955 T21158 T21160 det the,gene
R16956 T21159 T21160 compound A3G,gene
R16957 T21160 T21152 conj gene,promoter
R16958 T21161 T21163 punct (,panel
R16959 T21162 T21163 amod lower,panel
R16960 T21163 T21160 appos panel,gene
R16961 T21164 T21160 punct ),gene
R16962 T21165 T21166 auxpass were,used
R16963 T21166 T21166 ROOT used,used
R16964 T21167 T21166 punct .,used
R16965 T21168 T21195 prep As,used
R16966 T21169 T21170 amod positive,controls
R16967 T21170 T21168 pobj controls,As
R16968 T21171 T21195 punct ",",used
R16969 T21172 T21176 det the,DNA
R16970 T21173 T21176 amod sheared,DNA
R16971 T21174 T21173 cc and,sheared
R16972 T21175 T21173 conj cross-linked,sheared
R16973 T21176 T21195 nsubjpass DNA,used
R16974 T21177 T21176 prep before,DNA
R16975 T21178 T21180 det the,step
R16976 T21179 T21180 compound immunoprecipitation,step
R16977 T21180 T21177 pobj step,before
R16978 T21181 T21180 punct (,step
R16979 T21182 T21180 appos input,step
R16980 T21183 T21180 punct ),step
R16981 T21184 T21180 cc or,step
R16982 T21185 T21186 det a,plasmid
R16983 T21186 T21176 appos plasmid,DNA
R16984 T21187 T21186 acl carrying,plasmid
R16985 T21188 T21190 det the,sequence
R16986 T21189 T21190 compound target,sequence
R16987 T21190 T21187 dobj sequence,carrying
R16988 T21191 T21190 punct (,sequence
R16989 T21192 T21190 appos plasmid,sequence
R16990 T21193 T21190 punct ),sequence
R16991 T21194 T21195 auxpass was,used
R16992 T21195 T21195 ROOT used,used
R16993 T21196 T21195 prep as,used
R16994 T21197 T21196 pobj template,as
R16995 T21198 T21195 punct .,used

sentences

Id Subject Object Predicate Lexical cue
T20702 10-321 Sentence denotes Sp1 and Sp3 bind to the GC-box present in the A3G promoter. (A) Nuclear extracts of A3.01 T cells were incubated with a 32P-labeled commercial Sp1 oligonucleotide probe (Sp1cons) or labeled probes homologous to the unmodified or mutated E2 region (see Figure 1) of the A3G promoter (APO-Sp1/3 and APO-Sp1/3mut).
T20703 322-425 Sentence denotes Protein–DNA complexes were separated by polyacrylamide electrophoresis and detected by autoradiography.
T20704 426-831 Sentence denotes EMSA was performed with a 1- or 30-fold molar excess of unlabeled APO-Sp1/3 probe (competitor, lanes 6 and 7) or APO-Sp1/3mut probe (competitor mut., lanes 12 and 13). (B) Sp1- and Sp3-specific antibodies were added to the EMSA reactions resulting in a supershift (ss) of the respective antibody–protein–oligo complexes (lanes 3, 4, 7, 8, 11, 12). (C) ChIP assay was performed with DNA from A3.01 T cells.
T20705 832-908 Sentence denotes Immunoprecipitation was performed with antibodies against Sp1, Sp3 or actin.
T20706 909-1010 Sentence denotes PCR primer pairs specific for the A3G promoter (upper panel) or the A3G gene (lower panel) were used.
T20707 1011-1183 Sentence denotes As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template.
T227 0-9 Sentence denotes Figure 6.
T228 10-321 Sentence denotes Sp1 and Sp3 bind to the GC-box present in the A3G promoter. (A) Nuclear extracts of A3.01 T cells were incubated with a 32P-labeled commercial Sp1 oligonucleotide probe (Sp1cons) or labeled probes homologous to the unmodified or mutated E2 region (see Figure 1) of the A3G promoter (APO-Sp1/3 and APO-Sp1/3mut).
T229 322-425 Sentence denotes Protein–DNA complexes were separated by polyacrylamide electrophoresis and detected by autoradiography.
T230 426-831 Sentence denotes EMSA was performed with a 1- or 30-fold molar excess of unlabeled APO-Sp1/3 probe (competitor, lanes 6 and 7) or APO-Sp1/3mut probe (competitor mut., lanes 12 and 13). (B) Sp1- and Sp3-specific antibodies were added to the EMSA reactions resulting in a supershift (ss) of the respective antibody–protein–oligo complexes (lanes 3, 4, 7, 8, 11, 12). (C) ChIP assay was performed with DNA from A3.01 T cells.
T231 832-908 Sentence denotes Immunoprecipitation was performed with antibodies against Sp1, Sp3 or actin.
T232 909-1010 Sentence denotes PCR primer pairs specific for the A3G promoter (upper panel) or the A3G gene (lower panel) were used.
T233 1011-1183 Sentence denotes As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T20720 10-13 NN denotes Sp1
T20721 14-17 CC denotes and
T20722 18-21 NN denotes Sp3
T20723 22-26 VB denotes bind
T20724 27-29 TO denotes to
T20725 30-33 DT denotes the
T20726 34-40 NN denotes GC-box
T20727 41-48 JJ denotes present
T20728 49-51 IN denotes in
T20729 52-55 DT denotes the
T20730 56-59 NN denotes A3G
T20731 60-69 NN denotes promoter.
T20732 70-71 -LRB- denotes (
T20733 71-72 NN denotes A
T20734 72-73 -RRB- denotes )
T20735 74-81 JJ denotes Nuclear
T20736 82-90 NN denotes extracts
T20737 91-93 IN denotes of
T20738 94-101 NN denotes A3.01 T
T20739 102-107 NN denotes cells
T20740 108-112 VB denotes were
T20741 113-122 VB denotes incubated
T20742 123-127 IN denotes with
T20743 128-129 DT denotes a
T20744 130-141 JJ denotes 32P-labeled
T20745 142-152 JJ denotes commercial
T20746 153-156 NN denotes Sp1
T20747 157-172 NN denotes oligonucleotide
T20748 173-178 NN denotes probe
T20749 179-180 -LRB- denotes (
T20750 180-187 NN denotes Sp1cons
T20751 187-188 -RRB- denotes )
T20752 189-191 CC denotes or
T20753 192-199 VB denotes labeled
T20754 200-206 NN denotes probes
T20755 207-217 JJ denotes homologous
T20756 218-220 TO denotes to
T20757 221-224 DT denotes the
T20758 225-235 JJ denotes unmodified
T20759 236-238 CC denotes or
T20760 239-246 VB denotes mutated
T20761 247-249 NN denotes E2
T20762 250-256 NN denotes region
T20763 257-258 -LRB- denotes (
T20764 258-261 VB denotes see
T20765 262-268 NN denotes Figure
T20766 269-270 CD denotes 1
T20767 270-271 -RRB- denotes )
T20768 272-274 IN denotes of
T20769 275-278 DT denotes the
T20770 279-282 NN denotes A3G
T20771 283-291 NN denotes promoter
T20772 292-293 -LRB- denotes (
T20773 293-302 NN denotes APO-Sp1/3
T20774 303-306 CC denotes and
T20775 307-319 NN denotes APO-Sp1/3mut
T20776 319-320 -RRB- denotes )
T20777 322-333 NN denotes Protein–DNA
T20778 334-343 NN denotes complexes
T20779 344-348 VB denotes were
T20780 349-358 VB denotes separated
T20781 359-361 IN denotes by
T20782 362-376 NN denotes polyacrylamide
T20783 377-392 NN denotes electrophoresis
T20784 393-396 CC denotes and
T20785 397-405 VB denotes detected
T20786 406-408 IN denotes by
T20787 409-424 NN denotes autoradiography
T20788 426-430 NN denotes EMSA
T20789 431-434 VB denotes was
T20790 435-444 VB denotes performed
T20791 445-449 IN denotes with
T20792 450-451 DT denotes a
T20793 452-454 NN denotes 1-
T20794 455-457 CC denotes or
T20795 458-465 RB denotes 30-fold
T20796 466-471 JJ denotes molar
T20797 472-478 NN denotes excess
T20798 479-481 IN denotes of
T20799 482-491 JJ denotes unlabeled
T20800 492-501 NN denotes APO-Sp1/3
T20801 502-507 NN denotes probe
T20802 508-509 -LRB- denotes (
T20803 509-519 NN denotes competitor
T20804 519-520 -COMMA- denotes ,
T20805 521-526 NN denotes lanes
T20806 527-528 CD denotes 6
T20807 529-532 CC denotes and
T20808 533-534 CD denotes 7
T20809 534-535 -RRB- denotes )
T20810 536-538 CC denotes or
T20811 539-551 NN denotes APO-Sp1/3mut
T20812 552-557 NN denotes probe
T20813 558-559 -LRB- denotes (
T20814 559-569 NN denotes competitor
T20815 570-574 NN denotes mut.
T20816 574-575 -COMMA- denotes ,
T20817 576-581 NN denotes lanes
T20818 582-584 CD denotes 12
T20819 585-588 CC denotes and
T20820 589-591 CD denotes 13
T20821 591-592 -RRB- denotes )
T20822 592-593 -LRB- denotes .
T20823 594-595 NN denotes (
T20824 595-596 -RRB- denotes B
T20825 596-600 NN denotes ) Sp
T20826 600-603 CC denotes 1-
T20827 603-615 JJ denotes and Sp3-spec
T20828 615-625 NN denotes ific antib
T20829 625-629 VB denotes odie
T20830 629-634 VB denotes s wer
T20831 634-636 TO denotes e
T20832 636-639 DT denotes add
T20833 639-643 NN denotes ed t
T20834 643-652 NN denotes o the EMS
T20835 652-661 VB denotes A reactio
T20836 661-663 IN denotes ns
T20837 664-665 DT denotes r
T20838 665-675 NN denotes esulting i
T20839 675-676 -LRB- denotes n
T20840 677-679 NN denotes a
T20841 679-680 -RRB- denotes s
T20842 680-682 IN denotes up
T20843 682-685 DT denotes ers
T20844 685-695 JJ denotes hift (ss)
T20845 695-717 JJ denotes of the respective anti
T20846 717-726 NN denotes body–prot
T20847 726-727 -LRB- denotes e
T20848 727-732 NN denotes in–ol
T20849 732-733 CD denotes i
T20850 733-734 -COMMA- denotes g
T20851 734-735 CD denotes o
T20852 736-737 -COMMA- denotes c
T20853 737-738 CD denotes o
T20854 738-739 -COMMA- denotes m
T20855 739-740 CD denotes p
T20856 740-741 -COMMA- denotes l
T20857 741-743 CD denotes ex
T20858 743-744 -COMMA- denotes e
T20859 744-746 CD denotes s
T20860 746-747 -RRB- denotes (
T20861 747-748 -LRB- denotes l
T20862 748-749 NN denotes a
T20863 749-750 -RRB- denotes n
T20864 750-754 NN denotes es 3
T20865 754-759 NN denotes , 4,
T20866 759-762 VB denotes 7,
T20867 762-771 VB denotes 8, 11, 12
T20868 771-775 IN denotes ). (
T20869 775-778 NN denotes C)
T20870 778-782 IN denotes ChIP
T20871 783-790 NN denotes assay w
T20872 790-795 NN denotes as pe
T20873 832-851 NN denotes Immunoprecipitation
T20874 852-855 VB denotes was
T20875 856-865 VB denotes performed
T20876 866-870 IN denotes with
T20877 871-881 NN denotes antibodies
T20878 882-889 IN denotes against
T20879 890-893 NN denotes Sp1
T20880 893-894 -COMMA- denotes ,
T20881 895-898 NN denotes Sp3
T20882 899-901 CC denotes or
T20883 902-907 NN denotes actin
T20884 909-912 NN denotes PCR
T20885 913-919 NN denotes primer
T20886 920-925 NN denotes pairs
T20887 926-934 JJ denotes specific
T20888 935-938 IN denotes for
T20889 939-942 DT denotes the
T20890 943-946 NN denotes A3G
T20891 947-955 NN denotes promoter
T20892 956-957 -LRB- denotes (
T20893 957-962 JJ denotes upper
T20894 963-968 NN denotes panel
T20895 968-969 -RRB- denotes )
T20896 970-972 CC denotes or
T20897 973-976 DT denotes the
T20898 977-980 NN denotes A3G
T20899 981-985 NN denotes gene
T20900 986-987 -LRB- denotes (
T20901 987-992 JJ denotes lower
T20902 993-998 NN denotes panel
T20903 998-999 -RRB- denotes )
T20904 1000-1004 VB denotes were
T20905 1005-1009 VB denotes used
T20906 1011-1013 IN denotes As
T20907 1014-1022 JJ denotes positive
T20908 1023-1031 NN denotes controls
T20909 1031-1032 -COMMA- denotes ,
T20910 1033-1036 DT denotes the
T20911 1037-1044 JJ denotes sheared
T20912 1045-1048 CC denotes and
T20913 1049-1061 JJ denotes cross-linked
T20914 1062-1065 NN denotes DNA
T20915 1066-1072 IN denotes before
T20916 1073-1076 DT denotes the
T20917 1077-1096 NN denotes immunoprecipitation
T20918 1097-1101 NN denotes step
T20919 1102-1103 -LRB- denotes (
T20920 1103-1108 NN denotes input
T20921 1108-1109 -RRB- denotes )
T20922 1110-1112 CC denotes or
T20923 1113-1114 DT denotes a
T20924 1115-1122 NN denotes plasmid
T20925 1123-1131 VB denotes carrying
T20926 1132-1135 DT denotes the
T20927 1136-1142 NN denotes target
T20928 1143-1151 NN denotes sequence
T20929 1152-1153 -LRB- denotes (
T20930 1153-1160 NN denotes plasmid
T20931 1160-1161 -RRB- denotes )
T20932 1162-1165 VB denotes was
T20933 1166-1170 VB denotes used
T20934 1171-1173 IN denotes as
T20935 1174-1182 NN denotes template
R16539 T20720 T20721 arg1Of Sp1,and
R16540 T20721 T20723 arg1Of and,bind
R16541 T20722 T20721 arg2Of Sp3,and
R16542 T20723 T20724 arg1Of bind,to
R16543 T20726 T20724 arg2Of GC-box,to
R16544 T20726 T20725 arg1Of GC-box,the
R16545 T20726 T20727 arg1Of GC-box,present
R16546 T20727 T20728 arg1Of present,in
R16547 T20731 T20728 arg2Of promoter.,in
R16548 T20731 T20729 arg1Of promoter.,the
R16549 T20731 T20730 arg1Of promoter.,A3G
R16550 T20731 T20732 arg1Of promoter.,(
R16551 T20731 T20740 modOf promoter.,were
R16552 T20731 T20768 arg1Of promoter.,of
R16553 T20731 T20772 arg1Of promoter.,(
R16554 T20733 T20732 arg2Of A,(
R16555 T20734 T20732 arg3Of ),(
R16556 T20736 T20735 arg1Of extracts,Nuclear
R16557 T20736 T20737 arg1Of extracts,of
R16558 T20736 T20740 arg1Of extracts,were
R16559 T20736 T20741 arg2Of extracts,incubated
R16560 T20739 T20737 arg2Of cells,of
R16561 T20739 T20738 arg1Of cells,A3.01 T
R16562 T20741 T20740 arg2Of incubated,were
R16563 T20741 T20742 arg1Of incubated,with
R16564 T20741 T20763 arg1Of incubated,(
R16565 T20748 T20743 arg1Of probe,a
R16566 T20748 T20744 arg1Of probe,32P-labeled
R16567 T20748 T20745 arg1Of probe,commercial
R16568 T20748 T20746 arg1Of probe,Sp1
R16569 T20748 T20747 arg1Of probe,oligonucleotide
R16570 T20748 T20749 arg1Of probe,(
R16571 T20748 T20752 arg1Of probe,or
R16572 T20750 T20749 arg2Of Sp1cons,(
R16573 T20751 T20749 arg3Of ),(
R16574 T20752 T20742 arg2Of or,with
R16575 T20754 T20752 arg2Of probes,or
R16576 T20754 T20753 arg2Of probes,labeled
R16577 T20754 T20755 arg1Of probes,homologous
R16578 T20755 T20756 arg1Of homologous,to
R16579 T20762 T20756 arg2Of region,to
R16580 T20762 T20757 arg1Of region,the
R16581 T20762 T20758 arg1Of region,unmodified
R16582 T20762 T20759 arg1Of region,or
R16583 T20762 T20760 arg2Of region,mutated
R16584 T20762 T20761 arg1Of region,E2
R16585 T20764 T20763 arg2Of see,(
R16586 T20765 T20764 arg2Of Figure,see
R16587 T20765 T20766 arg1Of Figure,1
R16588 T20767 T20763 arg3Of ),(
R16589 T20771 T20768 arg2Of promoter,of
R16590 T20771 T20769 arg1Of promoter,the
R16591 T20771 T20770 arg1Of promoter,A3G
R16592 T20773 T20774 arg1Of APO-Sp1/3,and
R16593 T20774 T20772 arg2Of and,(
R16594 T20775 T20774 arg2Of APO-Sp1/3mut,and
R16595 T20776 T20772 arg3Of ),(
R16596 T20778 T20777 arg1Of complexes,Protein–DNA
R16597 T20778 T20779 arg1Of complexes,were
R16598 T20778 T20780 arg2Of complexes,separated
R16599 T20778 T20785 arg2Of complexes,detected
R16600 T20780 T20784 arg1Of separated,and
R16601 T20783 T20780 arg1Of electrophoresis,separated
R16602 T20783 T20781 arg2Of electrophoresis,by
R16603 T20783 T20782 arg1Of electrophoresis,polyacrylamide
R16604 T20784 T20779 arg2Of and,were
R16605 T20785 T20784 arg2Of detected,and
R16606 T20787 T20785 arg1Of autoradiography,detected
R16607 T20787 T20786 arg2Of autoradiography,by
R16608 T20788 T20789 arg1Of EMSA,was
R16609 T20788 T20790 arg2Of EMSA,performed
R16610 T20790 T20789 arg2Of performed,was
R16611 T20790 T20791 arg1Of performed,with
R16612 T20793 T20791 arg2Of 1-,with
R16613 T20793 T20792 arg1Of 1-,a
R16614 T20796 T20795 arg1Of molar,30-fold
R16615 T20797 T20794 arg2Of excess,or
R16616 T20797 T20796 arg1Of excess,molar
R16617 T20797 T20798 arg1Of excess,of
R16618 T20801 T20799 arg1Of probe,unlabeled
R16619 T20801 T20800 arg1Of probe,APO-Sp1/3
R16620 T20801 T20802 arg1Of probe,(
R16621 T20801 T20810 arg1Of probe,or
R16622 T20803 T20802 arg2Of competitor,(
R16623 T20803 T20804 arg1Of competitor,","
R16624 T20806 T20807 arg1Of 6,and
R16625 T20807 T20804 arg2Of and,","
R16626 T20807 T20805 arg1Of and,lanes
R16627 T20808 T20807 arg2Of 7,and
R16628 T20809 T20802 arg3Of ),(
R16629 T20810 T20798 arg2Of or,of
R16630 T20812 T20810 arg2Of probe,or
R16631 T20812 T20811 arg1Of probe,APO-Sp1/3mut
R16632 T20812 T20813 arg1Of probe,(
R16633 T20815 T20813 arg2Of mut.,(
R16634 T20815 T20814 arg1Of mut.,competitor
R16635 T20815 T20816 arg1Of mut.,","
R16636 T20818 T20819 arg1Of 12,and
R16637 T20819 T20816 arg2Of and,","
R16638 T20819 T20817 arg1Of and,lanes
R16639 T20820 T20819 arg2Of 13,and
R16640 T20821 T20813 arg3Of ),(
R16641 T20823 T20822 arg2Of (,.
R16642 T20824 T20822 arg3Of B,.
R16643 T20825 T20826 arg1Of ) Sp,1-
R16644 T20827 T20826 arg2Of and Sp3-spec,1-
R16645 T20828 T20822 arg1Of ific antib,.
R16646 T20828 T20825 arg1Of ific antib,) Sp
R16647 T20828 T20827 arg1Of ific antib,and Sp3-spec
R16648 T20828 T20829 arg1Of ific antib,odie
R16649 T20828 T20830 arg2Of ific antib,s wer
R16650 T20830 T20829 arg2Of s wer,odie
R16651 T20830 T20831 arg1Of s wer,e
R16652 T20834 T20831 arg2Of o the EMS,e
R16653 T20834 T20832 arg1Of o the EMS,add
R16654 T20834 T20833 arg1Of o the EMS,ed t
R16655 T20835 T20836 arg1Of A reactio,ns
R16656 T20838 T20836 arg2Of esulting i,ns
R16657 T20838 T20837 arg1Of esulting i,r
R16658 T20838 T20839 arg1Of esulting i,n
R16659 T20838 T20842 arg1Of esulting i,up
R16660 T20840 T20839 arg2Of a ,n
R16661 T20841 T20839 arg3Of s,n
R16662 T20846 T20842 arg2Of body–prot,up
R16663 T20846 T20843 arg1Of body–prot,ers
R16664 T20846 T20844 arg1Of body–prot,hift (ss)
R16665 T20846 T20845 arg1Of body–prot,of the respective anti
R16666 T20849 T20850 arg1Of i,g
R16667 T20850 T20852 arg1Of g,c
R16668 T20851 T20850 arg2Of o,g
R16669 T20852 T20854 arg1Of c,m
R16670 T20853 T20852 arg2Of o,c
R16671 T20854 T20856 arg1Of m,l
R16672 T20855 T20854 arg2Of p,m
R16673 T20856 T20847 arg2Of l,e
R16674 T20856 T20848 arg1Of l,in–ol
R16675 T20856 T20858 arg1Of l,e
R16676 T20857 T20856 arg2Of ex,l
R16677 T20859 T20858 arg2Of s ,e
R16678 T20860 T20847 arg3Of (,e
R16679 T20862 T20861 arg2Of a,l
R16680 T20863 T20861 arg3Of n,l
R16681 T20865 T20864 arg1Of ", 4, ",es 3
R16682 T20865 T20866 arg1Of ", 4, ","7, "
R16683 T20865 T20867 arg2Of ", 4, ","8, 11, 12"
R16684 T20867 T20866 arg2Of "8, 11, 12","7, "
R16685 T20867 T20868 arg1Of "8, 11, 12",). (
R16686 T20869 T20868 arg2Of C) ,). (
R16687 T20869 T20870 arg1Of C) ,ChIP
R16688 T20872 T20870 arg2Of as pe,ChIP
R16689 T20872 T20871 arg1Of as pe,assay w
R16690 T20873 T20874 arg1Of Immunoprecipitation,was
R16691 T20873 T20875 arg2Of Immunoprecipitation,performed
R16692 T20875 T20874 arg2Of performed,was
R16693 T20875 T20876 arg1Of performed,with
R16694 T20877 T20876 arg2Of antibodies,with
R16695 T20877 T20878 arg1Of antibodies,against
R16696 T20879 T20880 arg1Of Sp1,","
R16697 T20880 T20882 arg1Of ",",or
R16698 T20881 T20880 arg2Of Sp3,","
R16699 T20882 T20878 arg2Of or,against
R16700 T20883 T20882 arg2Of actin,or
R16701 T20886 T20884 arg1Of pairs,PCR
R16702 T20886 T20885 arg1Of pairs,primer
R16703 T20886 T20887 arg1Of pairs,specific
R16704 T20886 T20904 arg1Of pairs,were
R16705 T20886 T20905 arg2Of pairs,used
R16706 T20887 T20888 arg1Of specific,for
R16707 T20891 T20889 arg1Of promoter,the
R16708 T20891 T20890 arg1Of promoter,A3G
R16709 T20891 T20892 arg1Of promoter,(
R16710 T20891 T20896 arg1Of promoter,or
R16711 T20894 T20892 arg2Of panel,(
R16712 T20894 T20893 arg1Of panel,upper
R16713 T20895 T20892 arg3Of ),(
R16714 T20896 T20888 arg2Of or,for
R16715 T20899 T20896 arg2Of gene,or
R16716 T20899 T20897 arg1Of gene,the
R16717 T20899 T20898 arg1Of gene,A3G
R16718 T20899 T20900 arg1Of gene,(
R16719 T20902 T20900 arg2Of panel,(
R16720 T20902 T20901 arg1Of panel,lower
R16721 T20903 T20900 arg3Of ),(
R16722 T20905 T20904 arg2Of used,were
R16723 T20908 T20906 arg2Of controls,As
R16724 T20908 T20907 arg1Of controls,positive
R16725 T20911 T20912 arg1Of sheared,and
R16726 T20913 T20912 arg2Of cross-linked,and
R16727 T20914 T20910 arg1Of DNA,the
R16728 T20914 T20911 arg1Of DNA,sheared
R16729 T20914 T20913 arg1Of DNA,cross-linked
R16730 T20914 T20915 arg1Of DNA,before
R16731 T20914 T20932 arg1Of DNA,was
R16732 T20914 T20933 arg2Of DNA,used
R16733 T20918 T20916 arg1Of step,the
R16734 T20918 T20917 arg1Of step,immunoprecipitation
R16735 T20918 T20919 arg1Of step,(
R16736 T20918 T20922 arg1Of step,or
R16737 T20920 T20919 arg2Of input,(
R16738 T20921 T20919 arg3Of ),(
R16739 T20922 T20915 arg2Of or,before
R16740 T20924 T20922 arg2Of plasmid,or
R16741 T20924 T20923 arg1Of plasmid,a
R16742 T20924 T20925 arg1Of plasmid,carrying
R16743 T20928 T20925 arg2Of sequence,carrying
R16744 T20928 T20926 arg1Of sequence,the
R16745 T20928 T20927 arg1Of sequence,target
R16746 T20928 T20929 arg1Of sequence,(
R16747 T20930 T20929 arg2Of plasmid,(
R16748 T20931 T20929 arg3Of ),(
R16749 T20933 T20906 arg1Of used,As
R16750 T20933 T20909 arg1Of used,","
R16751 T20933 T20932 arg2Of used,was
R16752 T20933 T20934 arg1Of used,as
R16753 T20935 T20934 arg2Of template,as

events-check-again

Id Subject Object Predicate Lexical cue
T21335 10-13 Protein denotes Sp1
T21336 18-21 Protein denotes Sp3
T21337 22-26 Binding denotes bind
T21338 22-26 Binding denotes bind
T21339 34-40 Entity denotes GC-box
T21340 56-59 Protein denotes A3G
T21341 153-156 Protein denotes Sp1
T21342 279-282 Protein denotes A3G
T21343 297-300 Protein denotes Sp1
T21344 301-302 Protein denotes 3
T21345 311-314 Protein denotes Sp1
T21346 315-316 Protein denotes 3
T21347 496-499 Protein denotes Sp1
T21348 500-501 Protein denotes 3
T21349 543-546 Protein denotes Sp1
T21350 547-548 Protein denotes 3
T21351 598-601 Protein denotes Sp1
T21352 607-610 Protein denotes Sp3
T21353 890-893 Protein denotes Sp1
T21354 895-898 Protein denotes Sp3
T21355 902-907 Protein denotes actin
T21356 943-946 Protein denotes A3G
T21357 977-980 Protein denotes A3G
R17018 T21335 T21337 themeOf Sp1,bind
R17019 T21336 T21338 themeOf Sp3,bind
R17020 T21339 T21337 themeOf GC-box,bind
R17021 T21339 T21340 partOf GC-box,A3G
R17022 T21339 T21338 themeOf GC-box,bind

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T21358 10-13 Protein denotes Sp1
T21359 18-21 Protein denotes Sp3
T21360 56-68 Protein denotes A3G promoter
T21361 34-40 Entity denotes GC-box
T21362 22-26 Binding denotes bind
T21363 22-26 Binding denotes bind
T21364 22-26 Binding denotes bind
T21365 22-26 Binding denotes bind
T21366 22-26 Binding denotes bind
T21367 142-188 Protein denotes commercial Sp1 oligonucleotide probe (Sp1cons)
T21368 279-291 Protein denotes A3G promoter
T21369 293-296 Protein denotes APO
T21370 297-300 Protein denotes Sp1
T21371 307-310 Protein denotes APO
T21372 311-319 Protein denotes Sp1/3mut
T21373 492-495 Protein denotes APO
T21374 496-499 Protein denotes Sp1
T21375 539-542 Protein denotes APO
T21376 543-546 Protein denotes Sp1
T21377 598-601 Protein denotes Sp1
T21378 607-630 Protein denotes Sp3-specific antibodies
T21379 890-893 Protein denotes Sp1
T21380 895-898 Protein denotes Sp3
T21381 902-907 Protein denotes actin
R17023 T21358 T21362 themeOf Sp1,bind
R17024 T21358 T21365 themeOf Sp1,bind
R17025 T21359 T21363 themeOf Sp3,bind
R17026 T21359 T21366 themeOf Sp3,bind
R17027 T21360 T21364 themeOf A3G promoter,bind
R17028 T21360 T21365 themeOf A3G promoter,bind
R17029 T21360 T21366 themeOf A3G promoter,bind
R17030 T21360 T21361 partOf A3G promoter,GC-box
R17031 T21361 T21362 Site GC-box,bind
R17032 T21361 T21363 Site GC-box,bind
R17033 T21361 T21364 Site GC-box,bind
R17034 T21361 T21365 Site GC-box,bind
R17035 T21361 T21366 Site GC-box,bind

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T20690 315-316 Protein denotes 3
T20691 496-499 Protein denotes Sp1
T20692 500-501 Protein denotes 3
T20693 543-546 Protein denotes Sp1
T20694 547-548 Protein denotes 3
T20695 598-601 Protein denotes Sp1
T20696 607-610 Protein denotes Sp3
T20697 890-893 Protein denotes Sp1
T20698 895-898 Protein denotes Sp3
T20699 902-907 Protein denotes actin
T20700 943-946 Protein denotes A3G
T20701 977-980 Protein denotes A3G
T20679 10-13 Protein denotes Sp1
T20680 18-21 Protein denotes Sp3
T20681 22-26 Binding denotes bind
T20682 22-26 Binding denotes bind
T20683 34-40 Entity denotes GC-box
T20684 56-59 Protein denotes A3G
T20685 153-156 Protein denotes Sp1
T20686 279-282 Protein denotes A3G
T20687 297-300 Protein denotes Sp1
T20688 301-302 Protein denotes 3
T20689 311-314 Protein denotes Sp1
R16534 T20679 T20681 themeOf Sp1,bind
R16535 T20680 T20682 themeOf Sp3,bind
R16536 T20683 T20681 themeOf GC-box,bind
R16537 T20683 T20684 partOf GC-box,A3G
R16538 T20683 T20682 themeOf GC-box,bind

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T20936 10-13 P08047 denotes Sp1
T20937 18-21 Q02447 denotes Sp3
T20938 56-59 Q9HC16 denotes A3G
T20939 153-156 P08047 denotes Sp1
T20940 279-282 Q9HC16 denotes A3G
T20941 297-300 P08047 denotes Sp1
T20942 311-314 P08047 denotes Sp1
T20943 496-499 P08047 denotes Sp1
T20944 543-546 P08047 denotes Sp1
T20945 598-601 P08047 denotes Sp1
T20946 607-610 Q02447 denotes Sp3
T20947 890-893 P08047 denotes Sp1
T20948 895-898 Q02447 denotes Sp3
T20949 943-946 Q9HC16 denotes A3G
T20950 977-980 Q9HC16 denotes A3G