PMC:1920263 / 32355-33538
Annnotations
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20657 | 10-13 | Protein | denotes | Sp1 |
T20658 | 18-21 | Protein | denotes | Sp3 |
T20659 | 22-26 | Binding | denotes | bind |
T20660 | 34-40 | Entity | denotes | GC-box |
T20661 | 56-59 | Protein | denotes | A3G |
T20662 | 153-156 | Protein | denotes | Sp1 |
T20663 | 279-282 | Protein | denotes | A3G |
T20664 | 297-300 | Protein | denotes | Sp1 |
T20665 | 301-302 | Protein | denotes | 3 |
T20666 | 311-314 | Protein | denotes | Sp1 |
T20667 | 315-319 | Protein | denotes | 3mut |
T20668 | 496-499 | Protein | denotes | Sp1 |
T20669 | 500-501 | Protein | denotes | 3 |
T20670 | 543-546 | Protein | denotes | Sp1 |
T20671 | 547-551 | Protein | denotes | 3mut |
T20672 | 598-601 | Protein | denotes | Sp1 |
T20673 | 607-610 | Protein | denotes | Sp3 |
T20674 | 890-893 | Protein | denotes | Sp1 |
T20675 | 895-898 | Protein | denotes | Sp3 |
T20676 | 902-907 | Protein | denotes | actin |
T20677 | 943-946 | Protein | denotes | A3G |
T20678 | 977-980 | Protein | denotes | A3G |
R16530 | T20657 | T20659 | themeOf | Sp1,bind |
R16531 | T20658 | T20659 | themeOf | Sp3,bind |
R16532 | T20660 | T20659 | themeOf | GC-box,bind |
R16533 | T20660 | T20661 | partOf | GC-box,A3G |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21213 | 102-107 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T21214 | 825-830 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T21215 | 322-343 | http://purl.obolibrary.org/obo/GO_0001114 | denotes | Protein–DNA complexes |
T21216 | 322-343 | http://purl.obolibrary.org/obo/GO_0032993 | denotes | Protein–DNA complexes |
T21217 | 322-343 | http://purl.obolibrary.org/obo/GO_0097522 | denotes | Protein–DNA complexes |
T21218 | 620-630 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
T21219 | 871-881 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibodies |
T21220 | 620-630 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
T21221 | 871-881 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibodies |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21199 | 247-249 | http://purl.obolibrary.org/obo/GO_0004842 | denotes | E2 |
T21200 | 247-249 | http://purl.obolibrary.org/obo/GO_0019787 | denotes | E2 |
T21201 | 247-249 | http://purl.obolibrary.org/obo/GO_0061631 | denotes | E2 |
T21202 | 247-249 | http://purl.obolibrary.org/obo/GO_0061650 | denotes | E2 |
T21203 | 247-249 | http://purl.obolibrary.org/obo/GO_0061651 | denotes | E2 |
T21204 | 247-249 | http://purl.obolibrary.org/obo/GO_0061652 | denotes | E2 |
T21205 | 247-249 | http://purl.obolibrary.org/obo/GO_0061653 | denotes | E2 |
T21206 | 247-249 | http://purl.obolibrary.org/obo/GO_0061654 | denotes | E2 |
T21207 | 247-249 | http://purl.obolibrary.org/obo/GO_0061655 | denotes | E2 |
T21208 | 247-249 | http://purl.obolibrary.org/obo/GO_0061656 | denotes | E2 |
T21209 | 247-249 | http://purl.obolibrary.org/obo/GO_0061657 | denotes | E2 |
T21210 | 247-249 | http://purl.obolibrary.org/obo/GO_0061658 | denotes | E2 |
T21211 | 620-630 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
T21212 | 871-881 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibodies |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20708 | 247-249 | http://purl.obolibrary.org/obo/GO_0004842 | denotes | E2 |
T20709 | 247-249 | http://purl.obolibrary.org/obo/GO_0019787 | denotes | E2 |
T20710 | 247-249 | http://purl.obolibrary.org/obo/GO_0061631 | denotes | E2 |
T20711 | 247-249 | http://purl.obolibrary.org/obo/GO_0061650 | denotes | E2 |
T20712 | 247-249 | http://purl.obolibrary.org/obo/GO_0061651 | denotes | E2 |
T20713 | 247-249 | http://purl.obolibrary.org/obo/GO_0061652 | denotes | E2 |
T20714 | 247-249 | http://purl.obolibrary.org/obo/GO_0061653 | denotes | E2 |
T20715 | 247-249 | http://purl.obolibrary.org/obo/GO_0061654 | denotes | E2 |
T20716 | 247-249 | http://purl.obolibrary.org/obo/GO_0061655 | denotes | E2 |
T20717 | 247-249 | http://purl.obolibrary.org/obo/GO_0061656 | denotes | E2 |
T20718 | 247-249 | http://purl.obolibrary.org/obo/GO_0061657 | denotes | E2 |
T20719 | 247-249 | http://purl.obolibrary.org/obo/GO_0061658 | denotes | E2 |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20957 | 10-13 | CD | denotes | Sp1 |
T20958 | 14-17 | CC | denotes | and |
T20959 | 18-21 | JJ | denotes | Sp3 |
T20960 | 22-26 | NN | denotes | bind |
T20961 | 27-29 | TO | denotes | to |
T20962 | 30-33 | DT | denotes | the |
T20963 | 34-40 | NNP | denotes | GC-box |
T20964 | 41-48 | NN | denotes | present |
T20965 | 49-51 | IN | denotes | in |
T20966 | 52-55 | DT | denotes | the |
T20967 | 56-59 | NNP | denotes | A3G |
T20968 | 60-68 | NN | denotes | promoter |
T20969 | 68-69 | . | denotes | . |
T20970 | 70-71 | -LRB- | denotes | ( |
T20971 | 71-72 | NNP | denotes | A |
T20972 | 72-73 | -RRB- | denotes | ) |
T20973 | 74-81 | NNP | denotes | Nuclear |
T20974 | 82-90 | NNS | denotes | extracts |
T20975 | 91-93 | IN | denotes | of |
T20976 | 94-96 | CD | denotes | A3 |
T20977 | 96-99 | CD | denotes | .01 |
T20978 | 100-101 | NNP | denotes | T |
T20979 | 102-107 | NNS | denotes | cells |
T20980 | 108-112 | VBD | denotes | were |
T20981 | 113-122 | VBN | denotes | incubated |
T20982 | 123-127 | IN | denotes | with |
T20983 | 128-129 | DT | denotes | a |
T20984 | 130-141 | JJ | denotes | 32P-labeled |
T20985 | 142-152 | JJ | denotes | commercial |
T20986 | 153-156 | JJ | denotes | Sp1 |
T20987 | 157-172 | NN | denotes | oligonucleotide |
T20988 | 173-178 | NN | denotes | probe |
T20989 | 179-180 | -LRB- | denotes | ( |
T20990 | 180-187 | NNS | denotes | Sp1cons |
T20991 | 187-188 | -RRB- | denotes | ) |
T20992 | 189-191 | CC | denotes | or |
T20993 | 192-199 | VBN | denotes | labeled |
T20994 | 200-206 | NNS | denotes | probes |
T20995 | 207-217 | RB | denotes | homologous |
T20996 | 218-220 | TO | denotes | to |
T20997 | 221-224 | DT | denotes | the |
T20998 | 225-235 | JJ | denotes | unmodified |
T20999 | 236-238 | CC | denotes | or |
T21000 | 239-246 | VBN | denotes | mutated |
T21001 | 247-249 | CD | denotes | E2 |
T21002 | 250-256 | NN | denotes | region |
T21003 | 257-258 | -LRB- | denotes | ( |
T21004 | 258-261 | VB | denotes | see |
T21005 | 262-268 | NN | denotes | Figure |
T21006 | 269-270 | CD | denotes | 1 |
T21007 | 270-271 | -RRB- | denotes | ) |
T21008 | 272-274 | IN | denotes | of |
T21009 | 275-278 | DT | denotes | the |
T21010 | 279-282 | NNP | denotes | A3G |
T21011 | 283-291 | NN | denotes | promoter |
T21012 | 292-293 | -LRB- | denotes | ( |
T21013 | 293-300 | JJ | denotes | APO-Sp1 |
T21014 | 300-301 | NN | denotes | / |
T21015 | 301-302 | CD | denotes | 3 |
T21016 | 303-306 | CC | denotes | and |
T21017 | 307-314 | NNP | denotes | APO-Sp1 |
T21018 | 314-315 | VBD | denotes | / |
T21019 | 315-319 | CD | denotes | 3mut |
T21020 | 319-320 | -RRB- | denotes | ) |
T21021 | 320-321 | . | denotes | . |
T21022 | 322-329 | NN | denotes | Protein |
T21023 | 330-333 | NNP | denotes | DNA |
T21024 | 334-343 | NNS | denotes | complexes |
T21025 | 344-348 | VBD | denotes | were |
T21026 | 349-358 | VBN | denotes | separated |
T21027 | 359-361 | IN | denotes | by |
T21028 | 362-376 | NN | denotes | polyacrylamide |
T21029 | 377-392 | NN | denotes | electrophoresis |
T21030 | 393-396 | CC | denotes | and |
T21031 | 397-405 | VBN | denotes | detected |
T21032 | 406-408 | IN | denotes | by |
T21033 | 409-424 | NN | denotes | autoradiography |
T21034 | 424-425 | . | denotes | . |
T21035 | 426-430 | NNP | denotes | EMSA |
T21036 | 431-434 | VBD | denotes | was |
T21037 | 435-444 | VBN | denotes | performed |
T21038 | 445-449 | IN | denotes | with |
T21039 | 450-451 | DT | denotes | a |
T21040 | 452-453 | CD | denotes | 1 |
T21041 | 453-454 | : | denotes | - |
T21042 | 455-457 | CC | denotes | or |
T21043 | 458-465 | JJ | denotes | 30-fold |
T21044 | 466-471 | NN | denotes | molar |
T21045 | 472-478 | NN | denotes | excess |
T21046 | 479-481 | IN | denotes | of |
T21047 | 482-491 | JJ | denotes | unlabeled |
T21048 | 492-499 | JJ | denotes | APO-Sp1 |
T21049 | 499-500 | NN | denotes | / |
T21050 | 500-501 | CD | denotes | 3 |
T21051 | 502-507 | NN | denotes | probe |
T21052 | 508-509 | -LRB- | denotes | ( |
T21053 | 509-519 | NN | denotes | competitor |
T21054 | 519-520 | , | denotes | , |
T21055 | 521-526 | NNS | denotes | lanes |
T21056 | 527-528 | CD | denotes | 6 |
T21057 | 529-532 | CC | denotes | and |
T21058 | 533-534 | CD | denotes | 7 |
T21059 | 534-535 | -RRB- | denotes | ) |
T21060 | 536-538 | CC | denotes | or |
T21061 | 539-546 | JJ | denotes | APO-Sp1 |
T21062 | 546-547 | NN | denotes | / |
T21063 | 547-551 | CD | denotes | 3mut |
T21064 | 552-557 | NN | denotes | probe |
T21065 | 558-559 | -LRB- | denotes | ( |
T21066 | 559-569 | NN | denotes | competitor |
T21067 | 570-574 | NN | denotes | mut. |
T21068 | 574-575 | , | denotes | , |
T21069 | 576-581 | NNS | denotes | lanes |
T21070 | 582-584 | CD | denotes | 12 |
T21071 | 585-588 | CC | denotes | and |
T21072 | 589-591 | CD | denotes | 13 |
T21073 | 591-592 | -RRB- | denotes | ) |
T21074 | 592-593 | . | denotes | . |
T21075 | 594-595 | -LRB- | denotes | ( |
T21076 | 595-596 | NNP | denotes | B |
T21077 | 596-597 | -RRB- | denotes | ) |
T21078 | 598-601 | SYM | denotes | Sp1 |
T21079 | 601-602 | : | denotes | - |
T21080 | 603-606 | CC | denotes | and |
T21081 | 607-619 | JJ | denotes | Sp3-specific |
T21082 | 620-630 | NNS | denotes | antibodies |
T21083 | 631-635 | VBD | denotes | were |
T21084 | 636-641 | VBN | denotes | added |
T21085 | 642-644 | TO | denotes | to |
T21086 | 645-648 | DT | denotes | the |
T21087 | 649-653 | NNP | denotes | EMSA |
T21088 | 654-663 | NNS | denotes | reactions |
T21089 | 664-673 | VBG | denotes | resulting |
T21090 | 674-676 | IN | denotes | in |
T21091 | 677-678 | DT | denotes | a |
T21092 | 679-689 | NN | denotes | supershift |
T21093 | 690-691 | -LRB- | denotes | ( |
T21094 | 691-693 | FW | denotes | ss |
T21095 | 693-694 | -RRB- | denotes | ) |
T21096 | 695-697 | IN | denotes | of |
T21097 | 698-701 | DT | denotes | the |
T21098 | 702-712 | JJ | denotes | respective |
T21099 | 713-721 | NN | denotes | antibody |
T21100 | 722-729 | NN | denotes | protein |
T21101 | 730-735 | NN | denotes | oligo |
T21102 | 736-745 | NNS | denotes | complexes |
T21103 | 746-747 | -LRB- | denotes | ( |
T21104 | 747-752 | NNS | denotes | lanes |
T21105 | 753-754 | CD | denotes | 3 |
T21106 | 754-755 | , | denotes | , |
T21107 | 756-757 | CD | denotes | 4 |
T21108 | 757-758 | , | denotes | , |
T21109 | 759-760 | CD | denotes | 7 |
T21110 | 760-761 | , | denotes | , |
T21111 | 762-763 | CD | denotes | 8 |
T21112 | 763-764 | , | denotes | , |
T21113 | 765-767 | CD | denotes | 11 |
T21114 | 767-768 | , | denotes | , |
T21115 | 769-771 | CD | denotes | 12 |
T21116 | 771-772 | -RRB- | denotes | ) |
T21117 | 772-773 | . | denotes | . |
T21118 | 774-775 | -LRB- | denotes | ( |
T21119 | 775-776 | NNP | denotes | C |
T21120 | 776-777 | -RRB- | denotes | ) |
T21121 | 778-782 | NNP | denotes | ChIP |
T21122 | 783-788 | NN | denotes | assay |
T21123 | 789-792 | VBD | denotes | was |
T21124 | 793-802 | VBN | denotes | performed |
T21125 | 803-807 | IN | denotes | with |
T21126 | 808-811 | NNP | denotes | DNA |
T21127 | 812-816 | IN | denotes | from |
T21128 | 817-819 | NNP | denotes | A3 |
T21129 | 819-822 | CD | denotes | .01 |
T21130 | 823-824 | NNP | denotes | T |
T21131 | 825-830 | NNS | denotes | cells |
T21132 | 830-831 | . | denotes | . |
T21133 | 832-851 | NNP | denotes | Immunoprecipitation |
T21134 | 852-855 | VBD | denotes | was |
T21135 | 856-865 | VBN | denotes | performed |
T21136 | 866-870 | IN | denotes | with |
T21137 | 871-881 | NNS | denotes | antibodies |
T21138 | 882-889 | IN | denotes | against |
T21139 | 890-893 | NNP | denotes | Sp1 |
T21140 | 893-894 | , | denotes | , |
T21141 | 895-898 | NNP | denotes | Sp3 |
T21142 | 899-901 | CC | denotes | or |
T21143 | 902-907 | NN | denotes | actin |
T21144 | 907-908 | . | denotes | . |
T21145 | 909-912 | NNP | denotes | PCR |
T21146 | 913-919 | NN | denotes | primer |
T21147 | 920-925 | NNS | denotes | pairs |
T21148 | 926-934 | JJ | denotes | specific |
T21149 | 935-938 | IN | denotes | for |
T21150 | 939-942 | DT | denotes | the |
T21151 | 943-946 | NNP | denotes | A3G |
T21152 | 947-955 | NN | denotes | promoter |
T21153 | 956-957 | -LRB- | denotes | ( |
T21154 | 957-962 | JJ | denotes | upper |
T21155 | 963-968 | NN | denotes | panel |
T21156 | 968-969 | -RRB- | denotes | ) |
T21157 | 970-972 | CC | denotes | or |
T21158 | 973-976 | DT | denotes | the |
T21159 | 977-980 | NNP | denotes | A3G |
T21160 | 981-985 | NN | denotes | gene |
T21161 | 986-987 | -LRB- | denotes | ( |
T21162 | 987-992 | JJR | denotes | lower |
T21163 | 993-998 | NN | denotes | panel |
T21164 | 998-999 | -RRB- | denotes | ) |
T21165 | 1000-1004 | VBD | denotes | were |
T21166 | 1005-1009 | VBN | denotes | used |
T21167 | 1009-1010 | . | denotes | . |
T21168 | 1011-1013 | IN | denotes | As |
T21169 | 1014-1022 | JJ | denotes | positive |
T21170 | 1023-1031 | NNS | denotes | controls |
T21171 | 1031-1032 | , | denotes | , |
T21172 | 1033-1036 | DT | denotes | the |
T21173 | 1037-1044 | JJ | denotes | sheared |
T21174 | 1045-1048 | CC | denotes | and |
T21175 | 1049-1061 | JJ | denotes | cross-linked |
T21176 | 1062-1065 | NN | denotes | DNA |
T21177 | 1066-1072 | IN | denotes | before |
T21178 | 1073-1076 | DT | denotes | the |
T21179 | 1077-1096 | NN | denotes | immunoprecipitation |
T21180 | 1097-1101 | NN | denotes | step |
T21181 | 1102-1103 | -LRB- | denotes | ( |
T21182 | 1103-1108 | NN | denotes | input |
T21183 | 1108-1109 | -RRB- | denotes | ) |
T21184 | 1110-1112 | CC | denotes | or |
T21185 | 1113-1114 | DT | denotes | a |
T21186 | 1115-1122 | JJ | denotes | plasmid |
T21187 | 1123-1131 | VBG | denotes | carrying |
T21188 | 1132-1135 | DT | denotes | the |
T21189 | 1136-1142 | NN | denotes | target |
T21190 | 1143-1151 | NN | denotes | sequence |
T21191 | 1152-1153 | -LRB- | denotes | ( |
T21192 | 1153-1160 | NN | denotes | plasmid |
T21193 | 1160-1161 | -RRB- | denotes | ) |
T21194 | 1162-1165 | VBD | denotes | was |
T21195 | 1166-1170 | VBN | denotes | used |
T21196 | 1171-1173 | IN | denotes | as |
T21197 | 1174-1182 | NN | denotes | template |
T21198 | 1182-1183 | . | denotes | . |
R16754 | T20957 | T20960 | nummod | Sp1,bind |
R16755 | T20958 | T20957 | cc | and,Sp1 |
R16756 | T20959 | T20960 | amod | Sp3,bind |
R16757 | T20960 | T20960 | ROOT | bind,bind |
R16758 | T20961 | T20960 | prep | to,bind |
R16759 | T20962 | T20964 | det | the,present |
R16760 | T20963 | T20964 | compound | GC-box,present |
R16761 | T20964 | T20961 | pobj | present,to |
R16762 | T20965 | T20964 | prep | in,present |
R16763 | T20966 | T20968 | det | the,promoter |
R16764 | T20967 | T20968 | compound | A3G,promoter |
R16765 | T20968 | T20965 | pobj | promoter,in |
R16766 | T20969 | T20960 | punct | .,bind |
R16767 | T20970 | T20974 | punct | (,extracts |
R16768 | T20971 | T20974 | nmod | A,extracts |
R16769 | T20972 | T20971 | punct | ),A |
R16770 | T20973 | T20974 | compound | Nuclear,extracts |
R16771 | T20974 | T20981 | nsubjpass | extracts,incubated |
R16772 | T20975 | T20974 | prep | of,extracts |
R16773 | T20976 | T20979 | nummod | A3,cells |
R16774 | T20977 | T20979 | nummod | .01,cells |
R16775 | T20978 | T20979 | compound | T,cells |
R16776 | T20979 | T20975 | pobj | cells,of |
R16777 | T20980 | T20981 | auxpass | were,incubated |
R16778 | T20981 | T20981 | ROOT | incubated,incubated |
R16779 | T20982 | T20981 | prep | with,incubated |
R16780 | T20983 | T20988 | det | a,probe |
R16781 | T20984 | T20988 | amod | 32P-labeled,probe |
R16782 | T20985 | T20988 | amod | commercial,probe |
R16783 | T20986 | T20988 | nmod | Sp1,probe |
R16784 | T20987 | T20988 | compound | oligonucleotide,probe |
R16785 | T20988 | T20982 | pobj | probe,with |
R16786 | T20989 | T20990 | punct | (,Sp1cons |
R16787 | T20990 | T20988 | appos | Sp1cons,probe |
R16788 | T20991 | T20990 | punct | ),Sp1cons |
R16789 | T20992 | T20990 | cc | or,Sp1cons |
R16790 | T20993 | T20994 | amod | labeled,probes |
R16791 | T20994 | T20990 | conj | probes,Sp1cons |
R16792 | T20995 | T20994 | amod | homologous,probes |
R16793 | T20996 | T20990 | prep | to,Sp1cons |
R16794 | T20997 | T20998 | det | the,unmodified |
R16795 | T20998 | T21002 | amod | unmodified,region |
R16796 | T20999 | T20998 | cc | or,unmodified |
R16797 | T21000 | T20998 | conj | mutated,unmodified |
R16798 | T21001 | T21002 | nummod | E2,region |
R16799 | T21002 | T20996 | pobj | region,to |
R16800 | T21003 | T21004 | punct | (,see |
R16801 | T21004 | T20990 | parataxis | see,Sp1cons |
R16802 | T21005 | T21004 | dobj | Figure,see |
R16803 | T21006 | T21005 | nummod | 1,Figure |
R16804 | T21007 | T21004 | punct | ),see |
R16805 | T21008 | T20990 | prep | of,Sp1cons |
R16806 | T21009 | T21011 | det | the,promoter |
R16807 | T21010 | T21011 | compound | A3G,promoter |
R16808 | T21011 | T21008 | pobj | promoter,of |
R16809 | T21012 | T21014 | punct | (,/ |
R16810 | T21013 | T21014 | compound | APO-Sp1,/ |
R16811 | T21014 | T21011 | parataxis | /,promoter |
R16812 | T21015 | T21014 | nummod | 3,/ |
R16813 | T21016 | T21014 | cc | and,/ |
R16814 | T21017 | T21018 | nsubj | APO-Sp1,/ |
R16815 | T21018 | T21014 | parataxis | /,/ |
R16816 | T21019 | T21018 | nummod | 3mut,/ |
R16817 | T21020 | T21014 | punct | ),/ |
R16818 | T21021 | T20981 | punct | .,incubated |
R16819 | T21022 | T21022 | ROOT | Protein,Protein |
R16820 | T21023 | T21024 | compound | DNA,complexes |
R16821 | T21024 | T21026 | nsubjpass | complexes,separated |
R16822 | T21025 | T21026 | auxpass | were,separated |
R16823 | T21026 | T21026 | ROOT | separated,separated |
R16824 | T21027 | T21026 | agent | by,separated |
R16825 | T21028 | T21029 | compound | polyacrylamide,electrophoresis |
R16826 | T21029 | T21027 | pobj | electrophoresis,by |
R16827 | T21030 | T21026 | cc | and,separated |
R16828 | T21031 | T21026 | conj | detected,separated |
R16829 | T21032 | T21031 | agent | by,detected |
R16830 | T21033 | T21032 | pobj | autoradiography,by |
R16831 | T21034 | T21026 | punct | .,separated |
R16832 | T21035 | T21037 | nsubjpass | EMSA,performed |
R16833 | T21036 | T21037 | auxpass | was,performed |
R16834 | T21037 | T21037 | ROOT | performed,performed |
R16835 | T21038 | T21037 | prep | with,performed |
R16836 | T21039 | T21045 | det | a,excess |
R16837 | T21040 | T21045 | nummod | 1,excess |
R16838 | T21041 | T21040 | punct | -,1 |
R16839 | T21042 | T21040 | cc | or,1 |
R16840 | T21043 | T21040 | conj | 30-fold,1 |
R16841 | T21044 | T21045 | compound | molar,excess |
R16842 | T21045 | T21038 | pobj | excess,with |
R16843 | T21046 | T21045 | prep | of,excess |
R16844 | T21047 | T21049 | amod | unlabeled,/ |
R16845 | T21048 | T21049 | compound | APO-Sp1,/ |
R16846 | T21049 | T21051 | nmod | /,probe |
R16847 | T21050 | T21049 | nummod | 3,/ |
R16848 | T21051 | T21046 | pobj | probe,of |
R16849 | T21052 | T21053 | punct | (,competitor |
R16850 | T21053 | T21055 | nsubj | competitor,lanes |
R16851 | T21054 | T21053 | punct | ",",competitor |
R16852 | T21055 | T21045 | relcl | lanes,excess |
R16853 | T21056 | T21055 | nummod | 6,lanes |
R16854 | T21057 | T21056 | cc | and,6 |
R16855 | T21058 | T21056 | conj | 7,6 |
R16856 | T21059 | T21058 | punct | ),7 |
R16857 | T21060 | T21058 | cc | or,7 |
R16858 | T21061 | T21062 | compound | APO-Sp1,/ |
R16859 | T21062 | T21055 | appos | /,lanes |
R16860 | T21063 | T21064 | nummod | 3mut,probe |
R16861 | T21064 | T21055 | appos | probe,lanes |
R16862 | T21065 | T21067 | punct | (,mut. |
R16863 | T21066 | T21067 | compound | competitor,mut. |
R16864 | T21067 | T21064 | appos | mut.,probe |
R16865 | T21068 | T21067 | punct | ",",mut. |
R16866 | T21069 | T21067 | appos | lanes,mut. |
R16867 | T21070 | T21073 | nmod | 12,) |
R16868 | T21071 | T21070 | cc | and,12 |
R16869 | T21072 | T21070 | conj | 13,12 |
R16870 | T21073 | T21067 | punct | ),mut. |
R16871 | T21074 | T21037 | punct | .,performed |
R16872 | T21075 | T21076 | punct | (,B |
R16873 | T21076 | T21084 | nsubjpass | B,added |
R16874 | T21077 | T21076 | punct | ),B |
R16875 | T21078 | T21076 | punct | Sp1,B |
R16876 | T21079 | T21078 | punct | -,Sp1 |
R16877 | T21080 | T21078 | cc | and,Sp1 |
R16878 | T21081 | T21082 | amod | Sp3-specific,antibodies |
R16879 | T21082 | T21084 | nsubjpass | antibodies,added |
R16880 | T21083 | T21084 | auxpass | were,added |
R16881 | T21084 | T21084 | ROOT | added,added |
R16882 | T21085 | T21084 | prep | to,added |
R16883 | T21086 | T21088 | det | the,reactions |
R16884 | T21087 | T21088 | compound | EMSA,reactions |
R16885 | T21088 | T21085 | pobj | reactions,to |
R16886 | T21089 | T21088 | acl | resulting,reactions |
R16887 | T21090 | T21089 | prep | in,resulting |
R16888 | T21091 | T21092 | det | a,supershift |
R16889 | T21092 | T21090 | pobj | supershift,in |
R16890 | T21093 | T21094 | punct | (,ss |
R16891 | T21094 | T21092 | appos | ss,supershift |
R16892 | T21095 | T21092 | punct | ),supershift |
R16893 | T21096 | T21092 | prep | of,supershift |
R16894 | T21097 | T21099 | det | the,antibody |
R16895 | T21098 | T21099 | amod | respective,antibody |
R16896 | T21099 | T21096 | pobj | antibody,of |
R16897 | T21100 | T21102 | nmod | protein,complexes |
R16898 | T21101 | T21102 | compound | oligo,complexes |
R16899 | T21102 | T21085 | pobj | complexes,to |
R16900 | T21103 | T21102 | punct | (,complexes |
R16901 | T21104 | T21102 | appos | lanes,complexes |
R16902 | T21105 | T21102 | appos | 3,complexes |
R16903 | T21106 | T21105 | punct | ",",3 |
R16904 | T21107 | T21105 | appos | 4,3 |
R16905 | T21108 | T21105 | punct | ",",3 |
R16906 | T21109 | T21105 | appos | 7,3 |
R16907 | T21110 | T21109 | punct | ",",7 |
R16908 | T21111 | T21109 | conj | 8,7 |
R16909 | T21112 | T21111 | punct | ",",8 |
R16910 | T21113 | T21111 | conj | 11,8 |
R16911 | T21114 | T21111 | punct | ",",8 |
R16912 | T21115 | T21111 | conj | 12,8 |
R16913 | T21116 | T21111 | punct | ),8 |
R16914 | T21117 | T21084 | punct | .,added |
R16915 | T21118 | T21124 | punct | (,performed |
R16916 | T21119 | T21122 | compound | C,assay |
R16917 | T21120 | T21121 | punct | ),ChIP |
R16918 | T21121 | T21122 | compound | ChIP,assay |
R16919 | T21122 | T21124 | nsubjpass | assay,performed |
R16920 | T21123 | T21124 | auxpass | was,performed |
R16921 | T21124 | T21124 | ROOT | performed,performed |
R16922 | T21125 | T21124 | prep | with,performed |
R16923 | T21126 | T21125 | pobj | DNA,with |
R16924 | T21127 | T21126 | prep | from,DNA |
R16925 | T21128 | T21127 | pobj | A3,from |
R16926 | T21129 | T21131 | nummod | .01,cells |
R16927 | T21130 | T21131 | compound | T,cells |
R16928 | T21131 | T21125 | pobj | cells,with |
R16929 | T21132 | T21124 | punct | .,performed |
R16930 | T21133 | T21135 | nsubjpass | Immunoprecipitation,performed |
R16931 | T21134 | T21135 | auxpass | was,performed |
R16932 | T21135 | T21135 | ROOT | performed,performed |
R16933 | T21136 | T21135 | prep | with,performed |
R16934 | T21137 | T21136 | pobj | antibodies,with |
R16935 | T21138 | T21135 | prep | against,performed |
R16936 | T21139 | T21138 | pobj | Sp1,against |
R16937 | T21140 | T21139 | punct | ",",Sp1 |
R16938 | T21141 | T21139 | conj | Sp3,Sp1 |
R16939 | T21142 | T21141 | cc | or,Sp3 |
R16940 | T21143 | T21141 | conj | actin,Sp3 |
R16941 | T21144 | T21135 | punct | .,performed |
R16942 | T21145 | T21146 | compound | PCR,primer |
R16943 | T21146 | T21147 | compound | primer,pairs |
R16944 | T21147 | T21148 | npadvmod | pairs,specific |
R16945 | T21148 | T21166 | nsubjpass | specific,used |
R16946 | T21149 | T21148 | prep | for,specific |
R16947 | T21150 | T21152 | det | the,promoter |
R16948 | T21151 | T21152 | compound | A3G,promoter |
R16949 | T21152 | T21149 | pobj | promoter,for |
R16950 | T21153 | T21152 | punct | (,promoter |
R16951 | T21154 | T21155 | amod | upper,panel |
R16952 | T21155 | T21152 | appos | panel,promoter |
R16953 | T21156 | T21152 | punct | ),promoter |
R16954 | T21157 | T21152 | cc | or,promoter |
R16955 | T21158 | T21160 | det | the,gene |
R16956 | T21159 | T21160 | compound | A3G,gene |
R16957 | T21160 | T21152 | conj | gene,promoter |
R16958 | T21161 | T21163 | punct | (,panel |
R16959 | T21162 | T21163 | amod | lower,panel |
R16960 | T21163 | T21160 | appos | panel,gene |
R16961 | T21164 | T21160 | punct | ),gene |
R16962 | T21165 | T21166 | auxpass | were,used |
R16963 | T21166 | T21166 | ROOT | used,used |
R16964 | T21167 | T21166 | punct | .,used |
R16965 | T21168 | T21195 | prep | As,used |
R16966 | T21169 | T21170 | amod | positive,controls |
R16967 | T21170 | T21168 | pobj | controls,As |
R16968 | T21171 | T21195 | punct | ",",used |
R16969 | T21172 | T21176 | det | the,DNA |
R16970 | T21173 | T21176 | amod | sheared,DNA |
R16971 | T21174 | T21173 | cc | and,sheared |
R16972 | T21175 | T21173 | conj | cross-linked,sheared |
R16973 | T21176 | T21195 | nsubjpass | DNA,used |
R16974 | T21177 | T21176 | prep | before,DNA |
R16975 | T21178 | T21180 | det | the,step |
R16976 | T21179 | T21180 | compound | immunoprecipitation,step |
R16977 | T21180 | T21177 | pobj | step,before |
R16978 | T21181 | T21180 | punct | (,step |
R16979 | T21182 | T21180 | appos | input,step |
R16980 | T21183 | T21180 | punct | ),step |
R16981 | T21184 | T21180 | cc | or,step |
R16982 | T21185 | T21186 | det | a,plasmid |
R16983 | T21186 | T21176 | appos | plasmid,DNA |
R16984 | T21187 | T21186 | acl | carrying,plasmid |
R16985 | T21188 | T21190 | det | the,sequence |
R16986 | T21189 | T21190 | compound | target,sequence |
R16987 | T21190 | T21187 | dobj | sequence,carrying |
R16988 | T21191 | T21190 | punct | (,sequence |
R16989 | T21192 | T21190 | appos | plasmid,sequence |
R16990 | T21193 | T21190 | punct | ),sequence |
R16991 | T21194 | T21195 | auxpass | was,used |
R16992 | T21195 | T21195 | ROOT | used,used |
R16993 | T21196 | T21195 | prep | as,used |
R16994 | T21197 | T21196 | pobj | template,as |
R16995 | T21198 | T21195 | punct | .,used |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20702 | 10-321 | Sentence | denotes | Sp1 and Sp3 bind to the GC-box present in the A3G promoter. (A) Nuclear extracts of A3.01 T cells were incubated with a 32P-labeled commercial Sp1 oligonucleotide probe (Sp1cons) or labeled probes homologous to the unmodified or mutated E2 region (see Figure 1) of the A3G promoter (APO-Sp1/3 and APO-Sp1/3mut). |
T20703 | 322-425 | Sentence | denotes | Protein–DNA complexes were separated by polyacrylamide electrophoresis and detected by autoradiography. |
T20704 | 426-831 | Sentence | denotes | EMSA was performed with a 1- or 30-fold molar excess of unlabeled APO-Sp1/3 probe (competitor, lanes 6 and 7) or APO-Sp1/3mut probe (competitor mut., lanes 12 and 13). (B) Sp1- and Sp3-specific antibodies were added to the EMSA reactions resulting in a supershift (ss) of the respective antibody–protein–oligo complexes (lanes 3, 4, 7, 8, 11, 12). (C) ChIP assay was performed with DNA from A3.01 T cells. |
T20705 | 832-908 | Sentence | denotes | Immunoprecipitation was performed with antibodies against Sp1, Sp3 or actin. |
T20706 | 909-1010 | Sentence | denotes | PCR primer pairs specific for the A3G promoter (upper panel) or the A3G gene (lower panel) were used. |
T20707 | 1011-1183 | Sentence | denotes | As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template. |
T227 | 0-9 | Sentence | denotes | Figure 6. |
T228 | 10-321 | Sentence | denotes | Sp1 and Sp3 bind to the GC-box present in the A3G promoter. (A) Nuclear extracts of A3.01 T cells were incubated with a 32P-labeled commercial Sp1 oligonucleotide probe (Sp1cons) or labeled probes homologous to the unmodified or mutated E2 region (see Figure 1) of the A3G promoter (APO-Sp1/3 and APO-Sp1/3mut). |
T229 | 322-425 | Sentence | denotes | Protein–DNA complexes were separated by polyacrylamide electrophoresis and detected by autoradiography. |
T230 | 426-831 | Sentence | denotes | EMSA was performed with a 1- or 30-fold molar excess of unlabeled APO-Sp1/3 probe (competitor, lanes 6 and 7) or APO-Sp1/3mut probe (competitor mut., lanes 12 and 13). (B) Sp1- and Sp3-specific antibodies were added to the EMSA reactions resulting in a supershift (ss) of the respective antibody–protein–oligo complexes (lanes 3, 4, 7, 8, 11, 12). (C) ChIP assay was performed with DNA from A3.01 T cells. |
T231 | 832-908 | Sentence | denotes | Immunoprecipitation was performed with antibodies against Sp1, Sp3 or actin. |
T232 | 909-1010 | Sentence | denotes | PCR primer pairs specific for the A3G promoter (upper panel) or the A3G gene (lower panel) were used. |
T233 | 1011-1183 | Sentence | denotes | As positive controls, the sheared and cross-linked DNA before the immunoprecipitation step (input) or a plasmid carrying the target sequence (plasmid) was used as template. |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20720 | 10-13 | NN | denotes | Sp1 |
T20721 | 14-17 | CC | denotes | and |
T20722 | 18-21 | NN | denotes | Sp3 |
T20723 | 22-26 | VB | denotes | bind |
T20724 | 27-29 | TO | denotes | to |
T20725 | 30-33 | DT | denotes | the |
T20726 | 34-40 | NN | denotes | GC-box |
T20727 | 41-48 | JJ | denotes | present |
T20728 | 49-51 | IN | denotes | in |
T20729 | 52-55 | DT | denotes | the |
T20730 | 56-59 | NN | denotes | A3G |
T20731 | 60-69 | NN | denotes | promoter. |
T20732 | 70-71 | -LRB- | denotes | ( |
T20733 | 71-72 | NN | denotes | A |
T20734 | 72-73 | -RRB- | denotes | ) |
T20735 | 74-81 | JJ | denotes | Nuclear |
T20736 | 82-90 | NN | denotes | extracts |
T20737 | 91-93 | IN | denotes | of |
T20738 | 94-101 | NN | denotes | A3.01 T |
T20739 | 102-107 | NN | denotes | cells |
T20740 | 108-112 | VB | denotes | were |
T20741 | 113-122 | VB | denotes | incubated |
T20742 | 123-127 | IN | denotes | with |
T20743 | 128-129 | DT | denotes | a |
T20744 | 130-141 | JJ | denotes | 32P-labeled |
T20745 | 142-152 | JJ | denotes | commercial |
T20746 | 153-156 | NN | denotes | Sp1 |
T20747 | 157-172 | NN | denotes | oligonucleotide |
T20748 | 173-178 | NN | denotes | probe |
T20749 | 179-180 | -LRB- | denotes | ( |
T20750 | 180-187 | NN | denotes | Sp1cons |
T20751 | 187-188 | -RRB- | denotes | ) |
T20752 | 189-191 | CC | denotes | or |
T20753 | 192-199 | VB | denotes | labeled |
T20754 | 200-206 | NN | denotes | probes |
T20755 | 207-217 | JJ | denotes | homologous |
T20756 | 218-220 | TO | denotes | to |
T20757 | 221-224 | DT | denotes | the |
T20758 | 225-235 | JJ | denotes | unmodified |
T20759 | 236-238 | CC | denotes | or |
T20760 | 239-246 | VB | denotes | mutated |
T20761 | 247-249 | NN | denotes | E2 |
T20762 | 250-256 | NN | denotes | region |
T20763 | 257-258 | -LRB- | denotes | ( |
T20764 | 258-261 | VB | denotes | see |
T20765 | 262-268 | NN | denotes | Figure |
T20766 | 269-270 | CD | denotes | 1 |
T20767 | 270-271 | -RRB- | denotes | ) |
T20768 | 272-274 | IN | denotes | of |
T20769 | 275-278 | DT | denotes | the |
T20770 | 279-282 | NN | denotes | A3G |
T20771 | 283-291 | NN | denotes | promoter |
T20772 | 292-293 | -LRB- | denotes | ( |
T20773 | 293-302 | NN | denotes | APO-Sp1/3 |
T20774 | 303-306 | CC | denotes | and |
T20775 | 307-319 | NN | denotes | APO-Sp1/3mut |
T20776 | 319-320 | -RRB- | denotes | ) |
T20777 | 322-333 | NN | denotes | Protein–DNA |
T20778 | 334-343 | NN | denotes | complexes |
T20779 | 344-348 | VB | denotes | were |
T20780 | 349-358 | VB | denotes | separated |
T20781 | 359-361 | IN | denotes | by |
T20782 | 362-376 | NN | denotes | polyacrylamide |
T20783 | 377-392 | NN | denotes | electrophoresis |
T20784 | 393-396 | CC | denotes | and |
T20785 | 397-405 | VB | denotes | detected |
T20786 | 406-408 | IN | denotes | by |
T20787 | 409-424 | NN | denotes | autoradiography |
T20788 | 426-430 | NN | denotes | EMSA |
T20789 | 431-434 | VB | denotes | was |
T20790 | 435-444 | VB | denotes | performed |
T20791 | 445-449 | IN | denotes | with |
T20792 | 450-451 | DT | denotes | a |
T20793 | 452-454 | NN | denotes | 1- |
T20794 | 455-457 | CC | denotes | or |
T20795 | 458-465 | RB | denotes | 30-fold |
T20796 | 466-471 | JJ | denotes | molar |
T20797 | 472-478 | NN | denotes | excess |
T20798 | 479-481 | IN | denotes | of |
T20799 | 482-491 | JJ | denotes | unlabeled |
T20800 | 492-501 | NN | denotes | APO-Sp1/3 |
T20801 | 502-507 | NN | denotes | probe |
T20802 | 508-509 | -LRB- | denotes | ( |
T20803 | 509-519 | NN | denotes | competitor |
T20804 | 519-520 | -COMMA- | denotes | , |
T20805 | 521-526 | NN | denotes | lanes |
T20806 | 527-528 | CD | denotes | 6 |
T20807 | 529-532 | CC | denotes | and |
T20808 | 533-534 | CD | denotes | 7 |
T20809 | 534-535 | -RRB- | denotes | ) |
T20810 | 536-538 | CC | denotes | or |
T20811 | 539-551 | NN | denotes | APO-Sp1/3mut |
T20812 | 552-557 | NN | denotes | probe |
T20813 | 558-559 | -LRB- | denotes | ( |
T20814 | 559-569 | NN | denotes | competitor |
T20815 | 570-574 | NN | denotes | mut. |
T20816 | 574-575 | -COMMA- | denotes | , |
T20817 | 576-581 | NN | denotes | lanes |
T20818 | 582-584 | CD | denotes | 12 |
T20819 | 585-588 | CC | denotes | and |
T20820 | 589-591 | CD | denotes | 13 |
T20821 | 591-592 | -RRB- | denotes | ) |
T20822 | 592-593 | -LRB- | denotes | . |
T20823 | 594-595 | NN | denotes | ( |
T20824 | 595-596 | -RRB- | denotes | B |
T20825 | 596-600 | NN | denotes | ) Sp |
T20826 | 600-603 | CC | denotes | 1- |
T20827 | 603-615 | JJ | denotes | and Sp3-spec |
T20828 | 615-625 | NN | denotes | ific antib |
T20829 | 625-629 | VB | denotes | odie |
T20830 | 629-634 | VB | denotes | s wer |
T20831 | 634-636 | TO | denotes | e |
T20832 | 636-639 | DT | denotes | add |
T20833 | 639-643 | NN | denotes | ed t |
T20834 | 643-652 | NN | denotes | o the EMS |
T20835 | 652-661 | VB | denotes | A reactio |
T20836 | 661-663 | IN | denotes | ns |
T20837 | 664-665 | DT | denotes | r |
T20838 | 665-675 | NN | denotes | esulting i |
T20839 | 675-676 | -LRB- | denotes | n |
T20840 | 677-679 | NN | denotes | a |
T20841 | 679-680 | -RRB- | denotes | s |
T20842 | 680-682 | IN | denotes | up |
T20843 | 682-685 | DT | denotes | ers |
T20844 | 685-695 | JJ | denotes | hift (ss) |
T20845 | 695-717 | JJ | denotes | of the respective anti |
T20846 | 717-726 | NN | denotes | body–prot |
T20847 | 726-727 | -LRB- | denotes | e |
T20848 | 727-732 | NN | denotes | in–ol |
T20849 | 732-733 | CD | denotes | i |
T20850 | 733-734 | -COMMA- | denotes | g |
T20851 | 734-735 | CD | denotes | o |
T20852 | 736-737 | -COMMA- | denotes | c |
T20853 | 737-738 | CD | denotes | o |
T20854 | 738-739 | -COMMA- | denotes | m |
T20855 | 739-740 | CD | denotes | p |
T20856 | 740-741 | -COMMA- | denotes | l |
T20857 | 741-743 | CD | denotes | ex |
T20858 | 743-744 | -COMMA- | denotes | e |
T20859 | 744-746 | CD | denotes | s |
T20860 | 746-747 | -RRB- | denotes | ( |
T20861 | 747-748 | -LRB- | denotes | l |
T20862 | 748-749 | NN | denotes | a |
T20863 | 749-750 | -RRB- | denotes | n |
T20864 | 750-754 | NN | denotes | es 3 |
T20865 | 754-759 | NN | denotes | , 4, |
T20866 | 759-762 | VB | denotes | 7, |
T20867 | 762-771 | VB | denotes | 8, 11, 12 |
T20868 | 771-775 | IN | denotes | ). ( |
T20869 | 775-778 | NN | denotes | C) |
T20870 | 778-782 | IN | denotes | ChIP |
T20871 | 783-790 | NN | denotes | assay w |
T20872 | 790-795 | NN | denotes | as pe |
T20873 | 832-851 | NN | denotes | Immunoprecipitation |
T20874 | 852-855 | VB | denotes | was |
T20875 | 856-865 | VB | denotes | performed |
T20876 | 866-870 | IN | denotes | with |
T20877 | 871-881 | NN | denotes | antibodies |
T20878 | 882-889 | IN | denotes | against |
T20879 | 890-893 | NN | denotes | Sp1 |
T20880 | 893-894 | -COMMA- | denotes | , |
T20881 | 895-898 | NN | denotes | Sp3 |
T20882 | 899-901 | CC | denotes | or |
T20883 | 902-907 | NN | denotes | actin |
T20884 | 909-912 | NN | denotes | PCR |
T20885 | 913-919 | NN | denotes | primer |
T20886 | 920-925 | NN | denotes | pairs |
T20887 | 926-934 | JJ | denotes | specific |
T20888 | 935-938 | IN | denotes | for |
T20889 | 939-942 | DT | denotes | the |
T20890 | 943-946 | NN | denotes | A3G |
T20891 | 947-955 | NN | denotes | promoter |
T20892 | 956-957 | -LRB- | denotes | ( |
T20893 | 957-962 | JJ | denotes | upper |
T20894 | 963-968 | NN | denotes | panel |
T20895 | 968-969 | -RRB- | denotes | ) |
T20896 | 970-972 | CC | denotes | or |
T20897 | 973-976 | DT | denotes | the |
T20898 | 977-980 | NN | denotes | A3G |
T20899 | 981-985 | NN | denotes | gene |
T20900 | 986-987 | -LRB- | denotes | ( |
T20901 | 987-992 | JJ | denotes | lower |
T20902 | 993-998 | NN | denotes | panel |
T20903 | 998-999 | -RRB- | denotes | ) |
T20904 | 1000-1004 | VB | denotes | were |
T20905 | 1005-1009 | VB | denotes | used |
T20906 | 1011-1013 | IN | denotes | As |
T20907 | 1014-1022 | JJ | denotes | positive |
T20908 | 1023-1031 | NN | denotes | controls |
T20909 | 1031-1032 | -COMMA- | denotes | , |
T20910 | 1033-1036 | DT | denotes | the |
T20911 | 1037-1044 | JJ | denotes | sheared |
T20912 | 1045-1048 | CC | denotes | and |
T20913 | 1049-1061 | JJ | denotes | cross-linked |
T20914 | 1062-1065 | NN | denotes | DNA |
T20915 | 1066-1072 | IN | denotes | before |
T20916 | 1073-1076 | DT | denotes | the |
T20917 | 1077-1096 | NN | denotes | immunoprecipitation |
T20918 | 1097-1101 | NN | denotes | step |
T20919 | 1102-1103 | -LRB- | denotes | ( |
T20920 | 1103-1108 | NN | denotes | input |
T20921 | 1108-1109 | -RRB- | denotes | ) |
T20922 | 1110-1112 | CC | denotes | or |
T20923 | 1113-1114 | DT | denotes | a |
T20924 | 1115-1122 | NN | denotes | plasmid |
T20925 | 1123-1131 | VB | denotes | carrying |
T20926 | 1132-1135 | DT | denotes | the |
T20927 | 1136-1142 | NN | denotes | target |
T20928 | 1143-1151 | NN | denotes | sequence |
T20929 | 1152-1153 | -LRB- | denotes | ( |
T20930 | 1153-1160 | NN | denotes | plasmid |
T20931 | 1160-1161 | -RRB- | denotes | ) |
T20932 | 1162-1165 | VB | denotes | was |
T20933 | 1166-1170 | VB | denotes | used |
T20934 | 1171-1173 | IN | denotes | as |
T20935 | 1174-1182 | NN | denotes | template |
R16539 | T20720 | T20721 | arg1Of | Sp1,and |
R16540 | T20721 | T20723 | arg1Of | and,bind |
R16541 | T20722 | T20721 | arg2Of | Sp3,and |
R16542 | T20723 | T20724 | arg1Of | bind,to |
R16543 | T20726 | T20724 | arg2Of | GC-box,to |
R16544 | T20726 | T20725 | arg1Of | GC-box,the |
R16545 | T20726 | T20727 | arg1Of | GC-box,present |
R16546 | T20727 | T20728 | arg1Of | present,in |
R16547 | T20731 | T20728 | arg2Of | promoter.,in |
R16548 | T20731 | T20729 | arg1Of | promoter.,the |
R16549 | T20731 | T20730 | arg1Of | promoter.,A3G |
R16550 | T20731 | T20732 | arg1Of | promoter.,( |
R16551 | T20731 | T20740 | modOf | promoter.,were |
R16552 | T20731 | T20768 | arg1Of | promoter.,of |
R16553 | T20731 | T20772 | arg1Of | promoter.,( |
R16554 | T20733 | T20732 | arg2Of | A,( |
R16555 | T20734 | T20732 | arg3Of | ),( |
R16556 | T20736 | T20735 | arg1Of | extracts,Nuclear |
R16557 | T20736 | T20737 | arg1Of | extracts,of |
R16558 | T20736 | T20740 | arg1Of | extracts,were |
R16559 | T20736 | T20741 | arg2Of | extracts,incubated |
R16560 | T20739 | T20737 | arg2Of | cells,of |
R16561 | T20739 | T20738 | arg1Of | cells,A3.01 T |
R16562 | T20741 | T20740 | arg2Of | incubated,were |
R16563 | T20741 | T20742 | arg1Of | incubated,with |
R16564 | T20741 | T20763 | arg1Of | incubated,( |
R16565 | T20748 | T20743 | arg1Of | probe,a |
R16566 | T20748 | T20744 | arg1Of | probe,32P-labeled |
R16567 | T20748 | T20745 | arg1Of | probe,commercial |
R16568 | T20748 | T20746 | arg1Of | probe,Sp1 |
R16569 | T20748 | T20747 | arg1Of | probe,oligonucleotide |
R16570 | T20748 | T20749 | arg1Of | probe,( |
R16571 | T20748 | T20752 | arg1Of | probe,or |
R16572 | T20750 | T20749 | arg2Of | Sp1cons,( |
R16573 | T20751 | T20749 | arg3Of | ),( |
R16574 | T20752 | T20742 | arg2Of | or,with |
R16575 | T20754 | T20752 | arg2Of | probes,or |
R16576 | T20754 | T20753 | arg2Of | probes,labeled |
R16577 | T20754 | T20755 | arg1Of | probes,homologous |
R16578 | T20755 | T20756 | arg1Of | homologous,to |
R16579 | T20762 | T20756 | arg2Of | region,to |
R16580 | T20762 | T20757 | arg1Of | region,the |
R16581 | T20762 | T20758 | arg1Of | region,unmodified |
R16582 | T20762 | T20759 | arg1Of | region,or |
R16583 | T20762 | T20760 | arg2Of | region,mutated |
R16584 | T20762 | T20761 | arg1Of | region,E2 |
R16585 | T20764 | T20763 | arg2Of | see,( |
R16586 | T20765 | T20764 | arg2Of | Figure,see |
R16587 | T20765 | T20766 | arg1Of | Figure,1 |
R16588 | T20767 | T20763 | arg3Of | ),( |
R16589 | T20771 | T20768 | arg2Of | promoter,of |
R16590 | T20771 | T20769 | arg1Of | promoter,the |
R16591 | T20771 | T20770 | arg1Of | promoter,A3G |
R16592 | T20773 | T20774 | arg1Of | APO-Sp1/3,and |
R16593 | T20774 | T20772 | arg2Of | and,( |
R16594 | T20775 | T20774 | arg2Of | APO-Sp1/3mut,and |
R16595 | T20776 | T20772 | arg3Of | ),( |
R16596 | T20778 | T20777 | arg1Of | complexes,Protein–DNA |
R16597 | T20778 | T20779 | arg1Of | complexes,were |
R16598 | T20778 | T20780 | arg2Of | complexes,separated |
R16599 | T20778 | T20785 | arg2Of | complexes,detected |
R16600 | T20780 | T20784 | arg1Of | separated,and |
R16601 | T20783 | T20780 | arg1Of | electrophoresis,separated |
R16602 | T20783 | T20781 | arg2Of | electrophoresis,by |
R16603 | T20783 | T20782 | arg1Of | electrophoresis,polyacrylamide |
R16604 | T20784 | T20779 | arg2Of | and,were |
R16605 | T20785 | T20784 | arg2Of | detected,and |
R16606 | T20787 | T20785 | arg1Of | autoradiography,detected |
R16607 | T20787 | T20786 | arg2Of | autoradiography,by |
R16608 | T20788 | T20789 | arg1Of | EMSA,was |
R16609 | T20788 | T20790 | arg2Of | EMSA,performed |
R16610 | T20790 | T20789 | arg2Of | performed,was |
R16611 | T20790 | T20791 | arg1Of | performed,with |
R16612 | T20793 | T20791 | arg2Of | 1-,with |
R16613 | T20793 | T20792 | arg1Of | 1-,a |
R16614 | T20796 | T20795 | arg1Of | molar,30-fold |
R16615 | T20797 | T20794 | arg2Of | excess,or |
R16616 | T20797 | T20796 | arg1Of | excess,molar |
R16617 | T20797 | T20798 | arg1Of | excess,of |
R16618 | T20801 | T20799 | arg1Of | probe,unlabeled |
R16619 | T20801 | T20800 | arg1Of | probe,APO-Sp1/3 |
R16620 | T20801 | T20802 | arg1Of | probe,( |
R16621 | T20801 | T20810 | arg1Of | probe,or |
R16622 | T20803 | T20802 | arg2Of | competitor,( |
R16623 | T20803 | T20804 | arg1Of | competitor,"," |
R16624 | T20806 | T20807 | arg1Of | 6,and |
R16625 | T20807 | T20804 | arg2Of | and,"," |
R16626 | T20807 | T20805 | arg1Of | and,lanes |
R16627 | T20808 | T20807 | arg2Of | 7,and |
R16628 | T20809 | T20802 | arg3Of | ),( |
R16629 | T20810 | T20798 | arg2Of | or,of |
R16630 | T20812 | T20810 | arg2Of | probe,or |
R16631 | T20812 | T20811 | arg1Of | probe,APO-Sp1/3mut |
R16632 | T20812 | T20813 | arg1Of | probe,( |
R16633 | T20815 | T20813 | arg2Of | mut.,( |
R16634 | T20815 | T20814 | arg1Of | mut.,competitor |
R16635 | T20815 | T20816 | arg1Of | mut.,"," |
R16636 | T20818 | T20819 | arg1Of | 12,and |
R16637 | T20819 | T20816 | arg2Of | and,"," |
R16638 | T20819 | T20817 | arg1Of | and,lanes |
R16639 | T20820 | T20819 | arg2Of | 13,and |
R16640 | T20821 | T20813 | arg3Of | ),( |
R16641 | T20823 | T20822 | arg2Of | (,. |
R16642 | T20824 | T20822 | arg3Of | B,. |
R16643 | T20825 | T20826 | arg1Of | ) Sp,1- |
R16644 | T20827 | T20826 | arg2Of | and Sp3-spec,1- |
R16645 | T20828 | T20822 | arg1Of | ific antib,. |
R16646 | T20828 | T20825 | arg1Of | ific antib,) Sp |
R16647 | T20828 | T20827 | arg1Of | ific antib,and Sp3-spec |
R16648 | T20828 | T20829 | arg1Of | ific antib,odie |
R16649 | T20828 | T20830 | arg2Of | ific antib,s wer |
R16650 | T20830 | T20829 | arg2Of | s wer,odie |
R16651 | T20830 | T20831 | arg1Of | s wer,e |
R16652 | T20834 | T20831 | arg2Of | o the EMS,e |
R16653 | T20834 | T20832 | arg1Of | o the EMS,add |
R16654 | T20834 | T20833 | arg1Of | o the EMS,ed t |
R16655 | T20835 | T20836 | arg1Of | A reactio,ns |
R16656 | T20838 | T20836 | arg2Of | esulting i,ns |
R16657 | T20838 | T20837 | arg1Of | esulting i,r |
R16658 | T20838 | T20839 | arg1Of | esulting i,n |
R16659 | T20838 | T20842 | arg1Of | esulting i,up |
R16660 | T20840 | T20839 | arg2Of | a ,n |
R16661 | T20841 | T20839 | arg3Of | s,n |
R16662 | T20846 | T20842 | arg2Of | body–prot,up |
R16663 | T20846 | T20843 | arg1Of | body–prot,ers |
R16664 | T20846 | T20844 | arg1Of | body–prot,hift (ss) |
R16665 | T20846 | T20845 | arg1Of | body–prot,of the respective anti |
R16666 | T20849 | T20850 | arg1Of | i,g |
R16667 | T20850 | T20852 | arg1Of | g,c |
R16668 | T20851 | T20850 | arg2Of | o,g |
R16669 | T20852 | T20854 | arg1Of | c,m |
R16670 | T20853 | T20852 | arg2Of | o,c |
R16671 | T20854 | T20856 | arg1Of | m,l |
R16672 | T20855 | T20854 | arg2Of | p,m |
R16673 | T20856 | T20847 | arg2Of | l,e |
R16674 | T20856 | T20848 | arg1Of | l,in–ol |
R16675 | T20856 | T20858 | arg1Of | l,e |
R16676 | T20857 | T20856 | arg2Of | ex,l |
R16677 | T20859 | T20858 | arg2Of | s ,e |
R16678 | T20860 | T20847 | arg3Of | (,e |
R16679 | T20862 | T20861 | arg2Of | a,l |
R16680 | T20863 | T20861 | arg3Of | n,l |
R16681 | T20865 | T20864 | arg1Of | ", 4, ",es 3 |
R16682 | T20865 | T20866 | arg1Of | ", 4, ","7, " |
R16683 | T20865 | T20867 | arg2Of | ", 4, ","8, 11, 12" |
R16684 | T20867 | T20866 | arg2Of | "8, 11, 12","7, " |
R16685 | T20867 | T20868 | arg1Of | "8, 11, 12",). ( |
R16686 | T20869 | T20868 | arg2Of | C) ,). ( |
R16687 | T20869 | T20870 | arg1Of | C) ,ChIP |
R16688 | T20872 | T20870 | arg2Of | as pe,ChIP |
R16689 | T20872 | T20871 | arg1Of | as pe,assay w |
R16690 | T20873 | T20874 | arg1Of | Immunoprecipitation,was |
R16691 | T20873 | T20875 | arg2Of | Immunoprecipitation,performed |
R16692 | T20875 | T20874 | arg2Of | performed,was |
R16693 | T20875 | T20876 | arg1Of | performed,with |
R16694 | T20877 | T20876 | arg2Of | antibodies,with |
R16695 | T20877 | T20878 | arg1Of | antibodies,against |
R16696 | T20879 | T20880 | arg1Of | Sp1,"," |
R16697 | T20880 | T20882 | arg1Of | ",",or |
R16698 | T20881 | T20880 | arg2Of | Sp3,"," |
R16699 | T20882 | T20878 | arg2Of | or,against |
R16700 | T20883 | T20882 | arg2Of | actin,or |
R16701 | T20886 | T20884 | arg1Of | pairs,PCR |
R16702 | T20886 | T20885 | arg1Of | pairs,primer |
R16703 | T20886 | T20887 | arg1Of | pairs,specific |
R16704 | T20886 | T20904 | arg1Of | pairs,were |
R16705 | T20886 | T20905 | arg2Of | pairs,used |
R16706 | T20887 | T20888 | arg1Of | specific,for |
R16707 | T20891 | T20889 | arg1Of | promoter,the |
R16708 | T20891 | T20890 | arg1Of | promoter,A3G |
R16709 | T20891 | T20892 | arg1Of | promoter,( |
R16710 | T20891 | T20896 | arg1Of | promoter,or |
R16711 | T20894 | T20892 | arg2Of | panel,( |
R16712 | T20894 | T20893 | arg1Of | panel,upper |
R16713 | T20895 | T20892 | arg3Of | ),( |
R16714 | T20896 | T20888 | arg2Of | or,for |
R16715 | T20899 | T20896 | arg2Of | gene,or |
R16716 | T20899 | T20897 | arg1Of | gene,the |
R16717 | T20899 | T20898 | arg1Of | gene,A3G |
R16718 | T20899 | T20900 | arg1Of | gene,( |
R16719 | T20902 | T20900 | arg2Of | panel,( |
R16720 | T20902 | T20901 | arg1Of | panel,lower |
R16721 | T20903 | T20900 | arg3Of | ),( |
R16722 | T20905 | T20904 | arg2Of | used,were |
R16723 | T20908 | T20906 | arg2Of | controls,As |
R16724 | T20908 | T20907 | arg1Of | controls,positive |
R16725 | T20911 | T20912 | arg1Of | sheared,and |
R16726 | T20913 | T20912 | arg2Of | cross-linked,and |
R16727 | T20914 | T20910 | arg1Of | DNA,the |
R16728 | T20914 | T20911 | arg1Of | DNA,sheared |
R16729 | T20914 | T20913 | arg1Of | DNA,cross-linked |
R16730 | T20914 | T20915 | arg1Of | DNA,before |
R16731 | T20914 | T20932 | arg1Of | DNA,was |
R16732 | T20914 | T20933 | arg2Of | DNA,used |
R16733 | T20918 | T20916 | arg1Of | step,the |
R16734 | T20918 | T20917 | arg1Of | step,immunoprecipitation |
R16735 | T20918 | T20919 | arg1Of | step,( |
R16736 | T20918 | T20922 | arg1Of | step,or |
R16737 | T20920 | T20919 | arg2Of | input,( |
R16738 | T20921 | T20919 | arg3Of | ),( |
R16739 | T20922 | T20915 | arg2Of | or,before |
R16740 | T20924 | T20922 | arg2Of | plasmid,or |
R16741 | T20924 | T20923 | arg1Of | plasmid,a |
R16742 | T20924 | T20925 | arg1Of | plasmid,carrying |
R16743 | T20928 | T20925 | arg2Of | sequence,carrying |
R16744 | T20928 | T20926 | arg1Of | sequence,the |
R16745 | T20928 | T20927 | arg1Of | sequence,target |
R16746 | T20928 | T20929 | arg1Of | sequence,( |
R16747 | T20930 | T20929 | arg2Of | plasmid,( |
R16748 | T20931 | T20929 | arg3Of | ),( |
R16749 | T20933 | T20906 | arg1Of | used,As |
R16750 | T20933 | T20909 | arg1Of | used,"," |
R16751 | T20933 | T20932 | arg2Of | used,was |
R16752 | T20933 | T20934 | arg1Of | used,as |
R16753 | T20935 | T20934 | arg2Of | template,as |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21335 | 10-13 | Protein | denotes | Sp1 |
T21336 | 18-21 | Protein | denotes | Sp3 |
T21337 | 22-26 | Binding | denotes | bind |
T21338 | 22-26 | Binding | denotes | bind |
T21339 | 34-40 | Entity | denotes | GC-box |
T21340 | 56-59 | Protein | denotes | A3G |
T21341 | 153-156 | Protein | denotes | Sp1 |
T21342 | 279-282 | Protein | denotes | A3G |
T21343 | 297-300 | Protein | denotes | Sp1 |
T21344 | 301-302 | Protein | denotes | 3 |
T21345 | 311-314 | Protein | denotes | Sp1 |
T21346 | 315-316 | Protein | denotes | 3 |
T21347 | 496-499 | Protein | denotes | Sp1 |
T21348 | 500-501 | Protein | denotes | 3 |
T21349 | 543-546 | Protein | denotes | Sp1 |
T21350 | 547-548 | Protein | denotes | 3 |
T21351 | 598-601 | Protein | denotes | Sp1 |
T21352 | 607-610 | Protein | denotes | Sp3 |
T21353 | 890-893 | Protein | denotes | Sp1 |
T21354 | 895-898 | Protein | denotes | Sp3 |
T21355 | 902-907 | Protein | denotes | actin |
T21356 | 943-946 | Protein | denotes | A3G |
T21357 | 977-980 | Protein | denotes | A3G |
R17018 | T21335 | T21337 | themeOf | Sp1,bind |
R17019 | T21336 | T21338 | themeOf | Sp3,bind |
R17020 | T21339 | T21337 | themeOf | GC-box,bind |
R17021 | T21339 | T21340 | partOf | GC-box,A3G |
R17022 | T21339 | T21338 | themeOf | GC-box,bind |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T21358 | 10-13 | Protein | denotes | Sp1 |
T21359 | 18-21 | Protein | denotes | Sp3 |
T21360 | 56-68 | Protein | denotes | A3G promoter |
T21361 | 34-40 | Entity | denotes | GC-box |
T21362 | 22-26 | Binding | denotes | bind |
T21363 | 22-26 | Binding | denotes | bind |
T21364 | 22-26 | Binding | denotes | bind |
T21365 | 22-26 | Binding | denotes | bind |
T21366 | 22-26 | Binding | denotes | bind |
T21367 | 142-188 | Protein | denotes | commercial Sp1 oligonucleotide probe (Sp1cons) |
T21368 | 279-291 | Protein | denotes | A3G promoter |
T21369 | 293-296 | Protein | denotes | APO |
T21370 | 297-300 | Protein | denotes | Sp1 |
T21371 | 307-310 | Protein | denotes | APO |
T21372 | 311-319 | Protein | denotes | Sp1/3mut |
T21373 | 492-495 | Protein | denotes | APO |
T21374 | 496-499 | Protein | denotes | Sp1 |
T21375 | 539-542 | Protein | denotes | APO |
T21376 | 543-546 | Protein | denotes | Sp1 |
T21377 | 598-601 | Protein | denotes | Sp1 |
T21378 | 607-630 | Protein | denotes | Sp3-specific antibodies |
T21379 | 890-893 | Protein | denotes | Sp1 |
T21380 | 895-898 | Protein | denotes | Sp3 |
T21381 | 902-907 | Protein | denotes | actin |
R17023 | T21358 | T21362 | themeOf | Sp1,bind |
R17024 | T21358 | T21365 | themeOf | Sp1,bind |
R17025 | T21359 | T21363 | themeOf | Sp3,bind |
R17026 | T21359 | T21366 | themeOf | Sp3,bind |
R17027 | T21360 | T21364 | themeOf | A3G promoter,bind |
R17028 | T21360 | T21365 | themeOf | A3G promoter,bind |
R17029 | T21360 | T21366 | themeOf | A3G promoter,bind |
R17030 | T21360 | T21361 | partOf | A3G promoter,GC-box |
R17031 | T21361 | T21362 | Site | GC-box,bind |
R17032 | T21361 | T21363 | Site | GC-box,bind |
R17033 | T21361 | T21364 | Site | GC-box,bind |
R17034 | T21361 | T21365 | Site | GC-box,bind |
R17035 | T21361 | T21366 | Site | GC-box,bind |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20690 | 315-316 | Protein | denotes | 3 |
T20691 | 496-499 | Protein | denotes | Sp1 |
T20692 | 500-501 | Protein | denotes | 3 |
T20693 | 543-546 | Protein | denotes | Sp1 |
T20694 | 547-548 | Protein | denotes | 3 |
T20695 | 598-601 | Protein | denotes | Sp1 |
T20696 | 607-610 | Protein | denotes | Sp3 |
T20697 | 890-893 | Protein | denotes | Sp1 |
T20698 | 895-898 | Protein | denotes | Sp3 |
T20699 | 902-907 | Protein | denotes | actin |
T20700 | 943-946 | Protein | denotes | A3G |
T20701 | 977-980 | Protein | denotes | A3G |
T20679 | 10-13 | Protein | denotes | Sp1 |
T20680 | 18-21 | Protein | denotes | Sp3 |
T20681 | 22-26 | Binding | denotes | bind |
T20682 | 22-26 | Binding | denotes | bind |
T20683 | 34-40 | Entity | denotes | GC-box |
T20684 | 56-59 | Protein | denotes | A3G |
T20685 | 153-156 | Protein | denotes | Sp1 |
T20686 | 279-282 | Protein | denotes | A3G |
T20687 | 297-300 | Protein | denotes | Sp1 |
T20688 | 301-302 | Protein | denotes | 3 |
T20689 | 311-314 | Protein | denotes | Sp1 |
R16534 | T20679 | T20681 | themeOf | Sp1,bind |
R16535 | T20680 | T20682 | themeOf | Sp3,bind |
R16536 | T20683 | T20681 | themeOf | GC-box,bind |
R16537 | T20683 | T20684 | partOf | GC-box,A3G |
R16538 | T20683 | T20682 | themeOf | GC-box,bind |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T20936 | 10-13 | P08047 | denotes | Sp1 |
T20937 | 18-21 | Q02447 | denotes | Sp3 |
T20938 | 56-59 | Q9HC16 | denotes | A3G |
T20939 | 153-156 | P08047 | denotes | Sp1 |
T20940 | 279-282 | Q9HC16 | denotes | A3G |
T20941 | 297-300 | P08047 | denotes | Sp1 |
T20942 | 311-314 | P08047 | denotes | Sp1 |
T20943 | 496-499 | P08047 | denotes | Sp1 |
T20944 | 543-546 | P08047 | denotes | Sp1 |
T20945 | 598-601 | P08047 | denotes | Sp1 |
T20946 | 607-610 | Q02447 | denotes | Sp3 |
T20947 | 890-893 | P08047 | denotes | Sp1 |
T20948 | 895-898 | Q02447 | denotes | Sp3 |
T20949 | 943-946 | Q9HC16 | denotes | A3G |
T20950 | 977-980 | Q9HC16 | denotes | A3G |