PMC:1920263 / 2939-3167
Annnotations
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T770 | 8-16 | Protein | denotes | APOBEC3F |
| T771 | 18-21 | Protein | denotes | A3F |
| T772 | 64-67 | Protein | denotes | A3G |
| T773 | 77-80 | Protein | denotes | A3F |
| T774 | 107-112 | Protein | denotes | 1Δvif |
| R622 | T771 | T770 | equivalentTo | A3F,APOBEC3F |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1719 | 0-6 | NN | denotes | family |
| T1720 | 6-7 | , | denotes | , |
| T1721 | 8-16 | NNP | denotes | APOBEC3F |
| T1722 | 17-18 | -LRB- | denotes | ( |
| T1723 | 18-21 | NNP | denotes | A3F |
| T1724 | 21-22 | -RRB- | denotes | ) |
| T1725 | 22-23 | , | denotes | , |
| T1726 | 24-31 | VBZ | denotes | appears |
| T1727 | 32-34 | TO | denotes | to |
| T1728 | 35-39 | VB | denotes | have |
| T1729 | 40-47 | JJ | denotes | similar |
| T1730 | 48-58 | NNS | denotes | activities |
| T1731 | 59-63 | IN | denotes | like |
| T1732 | 64-67 | NNP | denotes | A3G |
| T1733 | 68-69 | -LRB- | denotes | ( |
| T1734 | 69-74 | CD | denotes | 26,27 |
| T1735 | 74-75 | -RRB- | denotes | ) |
| T1736 | 75-76 | . | denotes | . |
| T1737 | 77-80 | CD | denotes | A3F |
| T1738 | 81-83 | VBZ | denotes | is |
| T1739 | 84-88 | RB | denotes | also |
| T1740 | 89-97 | VBN | denotes | packaged |
| T1741 | 98-102 | IN | denotes | into |
| T1742 | 103-112 | JJ | denotes | HIV-1Δvif |
| T1743 | 113-122 | NNS | denotes | particles |
| T1744 | 123-126 | CC | denotes | and |
| T1745 | 127-134 | VBZ | denotes | induces |
| T1746 | 135-142 | JJ | denotes | similar |
| T1747 | 143-149 | NNP | denotes | C-to-U |
| T1748 | 150-162 | NNS | denotes | deaminations |
| T1749 | 162-163 | , | denotes | , |
| T1750 | 164-172 | IN | denotes | although |
| T1751 | 173-176 | DT | denotes | the |
| T1752 | 177-185 | NNS | denotes | proteins |
| T1753 | 186-192 | VBP | denotes | differ |
| T1754 | 193-195 | IN | denotes | in |
| T1755 | 196-201 | PRP$ | denotes | their |
| T1756 | 202-208 | NN | denotes | target |
| T1757 | 209-218 | NNS | denotes | sequences |
| R1448 | T1720 | T1719 | punct | ",",family |
| R1450 | T1721 | T1719 | appos | APOBEC3F,family |
| R1451 | T1722 | T1723 | punct | (,A3F |
| R1452 | T1723 | T1721 | appos | A3F,APOBEC3F |
| R1454 | T1724 | T1721 | punct | ),APOBEC3F |
| R1455 | T1725 | T1726 | punct | ",",appears |
| R1456 | T1726 | T1726 | ROOT | appears,appears |
| R1457 | T1727 | T1728 | aux | to,have |
| R1458 | T1728 | T1726 | xcomp | have,appears |
| R1459 | T1729 | T1730 | amod | similar,activities |
| R1461 | T1730 | T1728 | dobj | activities,have |
| R1462 | T1731 | T1730 | prep | like,activities |
| R1463 | T1732 | T1731 | pobj | A3G,like |
| R1465 | T1733 | T1734 | punct | (,"26,27" |
| R1466 | T1734 | T1732 | parataxis | "26,27",A3G |
| R1467 | T1735 | T1726 | punct | ),appears |
| R1469 | T1736 | T1726 | punct | .,appears |
| R1471 | T1737 | T1740 | nsubjpass | A3F,packaged |
| R1473 | T1738 | T1740 | auxpass | is,packaged |
| R1474 | T1739 | T1740 | advmod | also,packaged |
| R1476 | T1740 | T1740 | ROOT | packaged,packaged |
| R1477 | T1741 | T1740 | prep | into,packaged |
| R1478 | T1742 | T1743 | amod | HIV-1Δvif,particles |
| R1480 | T1743 | T1741 | pobj | particles,into |
| R1481 | T1744 | T1740 | cc | and,packaged |
| R1483 | T1745 | T1740 | conj | induces,packaged |
| R1484 | T1746 | T1748 | amod | similar,deaminations |
| R1490 | T1747 | T1748 | compound | C-to-U,deaminations |
| R1492 | T1748 | T1745 | dobj | deaminations,induces |
| R1493 | T1749 | T1745 | punct | ",",induces |
| R1495 | T1750 | T1753 | mark | although,differ |
| R1497 | T1751 | T1752 | det | the,proteins |
| R1498 | T1752 | T1753 | nsubj | proteins,differ |
| R1499 | T1753 | T1745 | advcl | differ,induces |
| R1501 | T1754 | T1753 | prep | in,differ |
| R1502 | T1755 | T1757 | poss | their,sequences |
| R1503 | T1756 | T1757 | compound | target,sequences |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 17517765-15296757-77155586 | 69-71 | 15296757 | denotes | 26 |
| 17517765-15141007-77155587 | 72-74 | 15141007 | denotes | 27 |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1142 | 0-6 | NN | denotes | family |
| T1143 | 6-7 | -COMMA- | denotes | , |
| T1144 | 8-16 | NN | denotes | APOBEC3F |
| T1145 | 17-18 | -LRB- | denotes | ( |
| T1146 | 18-21 | NN | denotes | A3F |
| T1147 | 21-22 | -RRB- | denotes | ) |
| T1148 | 22-23 | -COMMA- | denotes | , |
| T1149 | 24-31 | VB | denotes | appears |
| T1150 | 32-34 | TO | denotes | to |
| T1151 | 35-39 | VB | denotes | have |
| T1152 | 40-47 | JJ | denotes | similar |
| T1153 | 48-58 | NN | denotes | activities |
| T1154 | 59-63 | IN | denotes | like |
| T1155 | 64-67 | NN | denotes | A3G |
| T1156 | 68-69 | -LRB- | denotes | ( |
| T1157 | 69-74 | CD | denotes | 26,27 |
| T1158 | 74-75 | -RRB- | denotes | ) |
| T1159 | 77-80 | NN | denotes | A3F |
| T1160 | 81-83 | VB | denotes | is |
| T1161 | 84-88 | RB | denotes | also |
| T1162 | 89-97 | VB | denotes | packaged |
| T1163 | 98-102 | IN | denotes | into |
| T1164 | 103-112 | NN | denotes | HIV-1Δvif |
| T1165 | 113-122 | NN | denotes | particles |
| T1166 | 123-126 | CC | denotes | and |
| T1167 | 127-134 | VB | denotes | induces |
| T1168 | 135-142 | JJ | denotes | similar |
| T1169 | 143-149 | NN | denotes | C-to-U |
| T1170 | 150-162 | NN | denotes | deaminations |
| T1171 | 162-163 | -COMMA- | denotes | , |
| T1172 | 164-172 | IN | denotes | although |
| T1173 | 173-176 | DT | denotes | the |
| T1174 | 177-185 | NN | denotes | proteins |
| T1175 | 186-192 | VB | denotes | differ |
| T1176 | 193-195 | IN | denotes | in |
| T1177 | 196-201 | PRP-DOLLAR- | denotes | their |
| T1178 | 202-208 | NN | denotes | target |
| T1179 | 209-218 | NN | denotes | sequences |
| R930 | T1144 | T1143 | arg2Of | APOBEC3F,"," |
| R931 | T1144 | T1145 | arg1Of | APOBEC3F,( |
| R932 | T1146 | T1145 | arg2Of | A3F,( |
| R933 | T1147 | T1145 | arg3Of | ),( |
| R934 | T1149 | T1148 | arg1Of | appears,"," |
| R935 | T1151 | T1149 | arg2Of | have,appears |
| R936 | T1151 | T1150 | arg1Of | have,to |
| R937 | T1153 | T1151 | arg2Of | activities,have |
| R938 | T1153 | T1152 | arg1Of | activities,similar |
| R939 | T1153 | T1154 | arg1Of | activities,like |
| R940 | T1155 | T1154 | arg2Of | A3G,like |
| R941 | T1155 | T1156 | arg1Of | A3G,( |
| R942 | T1157 | T1156 | arg2Of | "26,27",( |
| R943 | T1158 | T1156 | arg3Of | ),( |
| R944 | T1159 | T1160 | arg1Of | A3F,is |
| R945 | T1159 | T1162 | arg2Of | A3F,packaged |
| R946 | T1159 | T1167 | arg1Of | A3F,induces |
| R947 | T1162 | T1160 | arg2Of | packaged,is |
| R948 | T1162 | T1161 | arg1Of | packaged,also |
| R949 | T1162 | T1163 | arg1Of | packaged,into |
| R950 | T1162 | T1166 | arg1Of | packaged,and |
| R951 | T1165 | T1163 | arg2Of | particles,into |
| R952 | T1165 | T1164 | arg1Of | particles,HIV-1Δvif |
| R953 | T1167 | T1166 | arg2Of | induces,and |
| R954 | T1167 | T1171 | arg1Of | induces,"," |
| R955 | T1167 | T1172 | arg1Of | induces,although |
| R956 | T1170 | T1167 | arg2Of | deaminations,induces |
| R957 | T1170 | T1168 | arg1Of | deaminations,similar |
| R958 | T1170 | T1169 | arg1Of | deaminations,C-to-U |
| R959 | T1174 | T1173 | arg1Of | proteins,the |
| R960 | T1174 | T1175 | arg1Of | proteins,differ |
| R961 | T1175 | T1172 | arg2Of | differ,although |
| R962 | T1175 | T1176 | arg1Of | differ,in |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2249 | 8-16 | Protein | denotes | APOBEC3F |
| T2250 | 18-21 | Protein | denotes | A3F |
| T2251 | 64-67 | Protein | denotes | A3G |
| T2252 | 77-80 | Protein | denotes | A3F |
| T2253 | 109-112 | Protein | denotes | vif |
| R1835 | T2250 | T2249 | equivalentTo | A3F,APOBEC3F |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T2288 | 8-16 | Protein | denotes | APOBEC3F |
| T2289 | 18-21 | Protein | denotes | A3F |
| T2290 | 77-80 | Protein | denotes | A3F |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T816 | 8-16 | Protein | denotes | APOBEC3F |
| T817 | 18-21 | Protein | denotes | A3F |
| T818 | 64-67 | Protein | denotes | A3G |
| T819 | 77-80 | Protein | denotes | A3F |
| T820 | 109-112 | Protein | denotes | vif |
| R638 | T817 | T816 | equivalentTo | A3F,APOBEC3F |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1411 | 8-16 | Q8IUX4 | denotes | APOBEC3F |
| T1412 | 18-21 | Q8IUX4 | denotes | A3F |
| T1413 | 64-67 | Q9HC16 | denotes | A3G |
| T1414 | 77-80 | Q8IUX4 | denotes | A3F |