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PMC:1920263 / 28666-28995 JSONTXT

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GO-MF

Id Subject Object Predicate Lexical cue
T11096 203-205 http://purl.obolibrary.org/obo/GO_0004839 denotes E1
T11098 280-282 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T11101 280-282 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T11104 280-282 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T11107 280-282 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T11110 280-282 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T11113 280-282 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T11116 280-282 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T11119 280-282 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T11122 280-282 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T11125 280-282 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T11128 280-282 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T11131 280-282 http://purl.obolibrary.org/obo/GO_0061658 denotes E2

GO-BP

Id Subject Object Predicate Lexical cue
T10294 23-38 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T10307 203-205 http://purl.obolibrary.org/obo/GO_0004839 denotes E1
T10309 280-282 http://purl.obolibrary.org/obo/GO_0004842 denotes E2
T10312 280-282 http://purl.obolibrary.org/obo/GO_0019787 denotes E2
T10315 280-282 http://purl.obolibrary.org/obo/GO_0061631 denotes E2
T10318 280-282 http://purl.obolibrary.org/obo/GO_0061650 denotes E2
T10321 280-282 http://purl.obolibrary.org/obo/GO_0061651 denotes E2
T10324 280-282 http://purl.obolibrary.org/obo/GO_0061652 denotes E2
T10327 280-282 http://purl.obolibrary.org/obo/GO_0061653 denotes E2
T10330 280-282 http://purl.obolibrary.org/obo/GO_0061654 denotes E2
T10333 280-282 http://purl.obolibrary.org/obo/GO_0061655 denotes E2
T10336 280-282 http://purl.obolibrary.org/obo/GO_0061656 denotes E2
T10339 280-282 http://purl.obolibrary.org/obo/GO_0061657 denotes E2
T10342 280-282 http://purl.obolibrary.org/obo/GO_0061658 denotes E2

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10920 0-2 TO denotes To
T10921 3-10 RBR denotes further
T10922 11-18 VB denotes examine
T10923 19-22 DT denotes the
T10924 23-38 JJ denotes transcriptional
T10925 39-46 NN denotes potency
T10926 47-49 IN denotes of
T10927 50-53 DT denotes the
T10928 54-56 CD denotes 30
T10929 57-59 NN denotes nt
T10930 60-67 NN denotes present
T10931 68-70 IN denotes in
T10932 71-74 DT denotes the
T10933 75-78 CD denotes 180
T10934 79-81 NN denotes bp
T10935 82-90 NN denotes promoter
T10936 90-91 , denotes ,
T10937 92-94 PRP denotes we
T10938 95-101 VBD denotes cloned
T10939 102-105 DT denotes the
T10940 106-112 NN denotes region
T10941 113-114 VBD denotes −
T10942 114-117 CD denotes 114
T10943 117-118 CD denotes /
T10944 118-119 NN denotes −
T10945 119-121 CD denotes 85
T10946 122-123 -LRB- denotes (
T10947 123-133 VBG denotes containing
T10948 134-137 DT denotes all
T10949 138-149 NNS denotes nucleotides
T10950 150-155 WDT denotes which
T10951 156-159 VBP denotes are
T10952 160-167 VBN denotes deleted
T10953 168-170 IN denotes in
T10954 171-174 DT denotes the
T10955 175-178 CD denotes 150
T10956 179-181 NN denotes bp
T10957 182-190 NN denotes fragment
T10958 190-191 , denotes ,
T10959 192-202 VBN denotes designated
T10960 203-205 NNP denotes E1
T10961 205-206 -RRB- denotes )
T10962 207-209 CC denotes or
T10963 210-213 DT denotes the
T10964 214-220 NN denotes region
T10965 221-222 NN denotes −
T10966 222-224 CD denotes 92
T10967 224-225 NN denotes /
T10968 225-226 NN denotes −
T10969 226-228 CD denotes 63
T10970 229-230 -LRB- denotes (
T10971 230-240 VBG denotes containing
T10972 241-244 DT denotes the
T10973 245-253 JJ denotes putative
T10974 254-261 JJ denotes Sp1/Sp3
T10975 262-267 NN denotes motif
T10976 267-268 , denotes ,
T10977 269-279 VBN denotes designated
T10978 280-282 NNP denotes E2
T10979 282-283 -RRB- denotes )
T10980 284-288 IN denotes into
T10981 289-292 DT denotes the
T10982 293-299 NN denotes vector
T10983 300-313 NN denotes pGL3-Promoter
T10984 314-315 -LRB- denotes (
T10985 315-318 VB denotes see
T10986 319-325 NN denotes Figure
T10987 326-327 CD denotes 1
T10988 327-328 -RRB- denotes )
T10989 328-329 . denotes .
R8939 T10920 T10922 aux To,examine
R8940 T10921 T10922 advmod further,examine
R8941 T10922 T10938 advcl examine,cloned
R8942 T10923 T10925 det the,potency
R8943 T10924 T10925 amod transcriptional,potency
R8944 T10925 T10922 dobj potency,examine
R8945 T10926 T10925 prep of,potency
R8946 T10927 T10930 det the,present
R8947 T10928 T10929 nummod 30,nt
R8948 T10929 T10930 compound nt,present
R8949 T10930 T10926 pobj present,of
R8950 T10931 T10930 prep in,present
R8951 T10932 T10935 det the,promoter
R8952 T10933 T10935 nummod 180,promoter
R8953 T10934 T10935 compound bp,promoter
R8954 T10935 T10931 pobj promoter,in
R8955 T10936 T10938 punct ",",cloned
R8956 T10937 T10938 nsubj we,cloned
R8957 T10938 T10938 ROOT cloned,cloned
R8958 T10939 T10940 det the,region
R8959 T10940 T10941 nsubj region,−
R8960 T10941 T10938 ccomp −,cloned
R8961 T10942 T10944 nummod 114,−
R8962 T10943 T10944 nummod /,−
R8963 T10944 T10941 dobj −,−
R8964 T10945 T10944 nummod 85,−
R8965 T10946 T10985 punct (,see
R8966 T10947 T10985 csubj containing,see
R8967 T10948 T10949 det all,nucleotides
R8968 T10949 T10947 dobj nucleotides,containing
R8969 T10950 T10952 nsubjpass which,deleted
R8970 T10951 T10952 auxpass are,deleted
R8971 T10952 T10949 relcl deleted,nucleotides
R8972 T10953 T10952 prep in,deleted
R8973 T10954 T10957 det the,fragment
R8974 T10955 T10957 nummod 150,fragment
R8975 T10956 T10957 compound bp,fragment
R8976 T10957 T10953 pobj fragment,in
R8977 T10958 T10949 punct ",",nucleotides
R8978 T10959 T10949 acl designated,nucleotides
R8979 T10960 T10959 oprd E1,designated
R8980 T10961 T10949 punct ),nucleotides
R8981 T10962 T10949 cc or,nucleotides
R8982 T10963 T10964 det the,region
R8983 T10964 T10985 nsubj region,see
R8984 T10965 T10985 dep −,see
R8985 T10966 T10985 dep 92,see
R8986 T10967 T10968 compound /,−
R8987 T10968 T10985 dep −,see
R8988 T10969 T10968 nummod 63,−
R8989 T10970 T10971 punct (,containing
R8990 T10971 T10968 acl containing,−
R8991 T10972 T10975 det the,motif
R8992 T10973 T10975 amod putative,motif
R8993 T10974 T10975 amod Sp1/Sp3,motif
R8994 T10975 T10971 dobj motif,containing
R8995 T10976 T10975 punct ",",motif
R8996 T10977 T10975 acl designated,motif
R8997 T10978 T10977 dobj E2,designated
R8998 T10979 T10977 punct ),designated
R8999 T10980 T10977 prep into,designated
R9000 T10981 T10983 det the,pGL3-Promoter
R9001 T10982 T10983 compound vector,pGL3-Promoter
R9002 T10983 T10980 pobj pGL3-Promoter,into
R9003 T10984 T10985 punct (,see
R9004 T10985 T10985 ROOT see,see
R9005 T10986 T10985 dobj Figure,see
R9006 T10987 T10986 nummod 1,Figure
R9007 T10988 T10985 punct ),see
R9008 T10989 T10985 punct .,see

sentences

Id Subject Object Predicate Lexical cue
T10287 0-329 Sentence denotes To further examine the transcriptional potency of the 30 nt present in the 180 bp promoter, we cloned the region −114/−85 (containing all nucleotides which are deleted in the 150 bp fragment, designated E1) or the region −92/−63 (containing the putative Sp1/Sp3 motif, designated E2) into the vector pGL3-Promoter (see Figure 1).
T203 0-329 Sentence denotes To further examine the transcriptional potency of the 30 nt present in the 180 bp promoter, we cloned the region −114/−85 (containing all nucleotides which are deleted in the 150 bp fragment, designated E1) or the region −92/−63 (containing the putative Sp1/Sp3 motif, designated E2) into the vector pGL3-Promoter (see Figure 1).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10537 0-2 TO denotes To
T10538 3-10 RB denotes further
T10539 11-18 VB denotes examine
T10540 19-22 DT denotes the
T10541 23-38 JJ denotes transcriptional
T10542 39-46 NN denotes potency
T10543 47-49 IN denotes of
T10544 50-53 DT denotes the
T10545 54-59 JJ denotes 30 nt
T10546 60-67 JJ denotes present
T10547 68-70 IN denotes in
T10548 71-74 DT denotes the
T10549 75-81 NN denotes 180 bp
T10550 82-90 NN denotes promoter
T10551 90-91 -COMMA- denotes ,
T10552 92-94 PRP denotes we
T10553 95-101 VB denotes cloned
T10554 102-105 DT denotes the
T10555 106-112 NN denotes region
T10556 113-121 CD denotes −114/−85
T10557 122-123 -LRB- denotes (
T10558 123-133 VB denotes containing
T10559 134-137 DT denotes all
T10560 138-149 NN denotes nucleotides
T10561 150-155 WDT denotes which
T10562 156-159 VB denotes are
T10563 160-167 VB denotes deleted
T10564 168-170 IN denotes in
T10565 171-174 DT denotes the
T10566 175-181 NN denotes 150 bp
T10567 182-190 NN denotes fragment
T10568 190-191 -COMMA- denotes ,
T10569 192-202 VB denotes designated
T10570 203-205 NN denotes E1
T10571 205-206 -RRB- denotes )
T10572 207-209 CC denotes or
T10573 210-213 DT denotes the
T10574 214-220 NN denotes region
T10575 221-228 CD denotes −92/−63
T10576 229-230 -LRB- denotes (
T10577 230-240 VB denotes containing
T10578 241-244 DT denotes the
T10579 245-253 JJ denotes putative
T10580 254-261 NN denotes Sp1/Sp3
T10581 262-267 NN denotes motif
T10582 267-268 -COMMA- denotes ,
T10583 269-279 VB denotes designated
T10584 280-282 NN denotes E2
T10585 282-283 -RRB- denotes )
T10586 284-288 IN denotes into
T10587 289-292 DT denotes the
T10588 293-299 NN denotes vector
T10589 300-313 NN denotes pGL3-Promoter
T10590 314-315 -LRB- denotes (
T10591 315-318 VB denotes see
T10592 319-325 NN denotes Figure
T10593 326-327 CD denotes 1
T10594 327-328 -RRB- denotes )
R8577 T10539 T10537 arg1Of examine,To
R8578 T10539 T10538 arg1Of examine,further
R8579 T10542 T10539 arg2Of potency,examine
R8580 T10542 T10540 arg1Of potency,the
R8581 T10542 T10541 arg1Of potency,transcriptional
R8582 T10542 T10543 arg1Of potency,of
R8583 T10545 T10543 arg2Of 30 nt,of
R8584 T10545 T10544 arg1Of 30 nt,the
R8585 T10545 T10546 arg1Of 30 nt,present
R8586 T10546 T10547 arg1Of present,in
R8587 T10550 T10547 arg2Of promoter,in
R8588 T10550 T10548 arg1Of promoter,the
R8589 T10550 T10549 arg1Of promoter,180 bp
R8590 T10552 T10539 arg1Of we,examine
R8591 T10552 T10553 arg1Of we,cloned
R8592 T10553 T10537 modOf cloned,To
R8593 T10553 T10551 arg1Of cloned,","
R8594 T10553 T10590 arg1Of cloned,(
R8595 T10555 T10554 arg1Of region,the
R8596 T10555 T10556 arg1Of region,−114/−85
R8597 T10555 T10557 arg1Of region,(
R8598 T10555 T10572 arg1Of region,or
R8599 T10558 T10557 arg2Of containing,(
R8600 T10560 T10558 arg2Of nucleotides,containing
R8601 T10560 T10559 arg1Of nucleotides,all
R8602 T10560 T10561 arg1Of nucleotides,which
R8603 T10560 T10562 arg1Of nucleotides,are
R8604 T10560 T10563 arg2Of nucleotides,deleted
R8605 T10560 T10568 arg1Of nucleotides,","
R8606 T10560 T10569 arg2Of nucleotides,designated
R8607 T10563 T10562 arg2Of deleted,are
R8608 T10563 T10564 arg1Of deleted,in
R8609 T10567 T10564 arg2Of fragment,in
R8610 T10567 T10565 arg1Of fragment,the
R8611 T10567 T10566 arg1Of fragment,150 bp
R8612 T10570 T10569 arg3Of E1,designated
R8613 T10571 T10557 arg3Of ),(
R8614 T10572 T10553 arg2Of or,cloned
R8615 T10574 T10572 arg2Of region,or
R8616 T10574 T10573 arg1Of region,the
R8617 T10574 T10575 arg1Of region,−92/−63
R8618 T10574 T10576 arg1Of region,(
R8619 T10574 T10586 arg1Of region,into
R8620 T10577 T10576 arg2Of containing,(
R8621 T10581 T10577 arg2Of motif,containing
R8622 T10581 T10578 arg1Of motif,the
R8623 T10581 T10579 arg1Of motif,putative
R8624 T10581 T10580 arg1Of motif,Sp1/Sp3
R8625 T10581 T10582 arg1Of motif,","
R8626 T10581 T10583 arg2Of motif,designated
R8627 T10584 T10583 arg3Of E2,designated
R8628 T10585 T10576 arg3Of ),(
R8629 T10589 T10586 arg2Of pGL3-Promoter,into
R8630 T10589 T10587 arg1Of pGL3-Promoter,the
R8631 T10589 T10588 arg1Of pGL3-Promoter,vector
R8632 T10591 T10590 arg2Of see,(
R8633 T10592 T10591 arg2Of Figure,see
R8634 T10592 T10593 arg1Of Figure,1
R8635 T10594 T10590 arg3Of ),(

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11250 203-205 Protein denotes E1
T11251 254-257 Protein denotes Sp1
T11252 258-261 Protein denotes Sp3

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10692 254-257 P08047 denotes Sp1
T10693 258-261 Q02447 denotes Sp3