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PMC:1920263 / 27931-28120 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T10252 155-158 Protein denotes Sp1
T10253 163-166 Protein denotes Sp3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10787 0-3 DT denotes The
T10788 4-12 NN denotes sequence
T10789 13-23 NNP denotes TGGGCGGGAC
T10790 23-24 , denotes ,
T10791 25-30 WDT denotes which
T10792 31-33 VBZ denotes is
T10793 34-45 VBN denotes interrupted
T10794 46-48 IN denotes in
T10795 49-52 DT denotes the
T10796 53-56 CD denotes 150
T10797 57-59 NN denotes bp
T10798 60-68 NN denotes fragment
T10799 68-69 , denotes ,
T10800 70-80 VBZ denotes represents
T10801 81-82 DT denotes a
T10802 83-90 NN denotes variant
T10803 91-93 IN denotes of
T10804 94-97 DT denotes the
T10805 98-99 -LRB- denotes (
T10806 99-102 NNP denotes G/T
T10807 102-103 -RRB- denotes )
T10808 103-109 NNP denotes GGGCGG
T10809 109-110 -LRB- denotes (
T10810 110-113 NNP denotes G/A
T10811 113-114 -RRB- denotes )
T10812 114-115 -LRB- denotes (
T10813 115-118 NNP denotes G/A
T10814 118-119 -RRB- denotes )
T10815 119-120 -LRB- denotes (
T10816 120-123 NNP denotes C/T
T10817 123-124 -RRB- denotes )
T10818 125-134 NN denotes consensus
T10819 135-140 NN denotes motif
T10820 141-151 VBN denotes recognized
T10821 152-154 IN denotes by
T10822 155-158 NNP denotes Sp1
T10823 159-162 CC denotes and
T10824 163-166 JJ denotes Sp3
T10825 167-180 NN denotes transcription
T10826 181-188 NNS denotes factors
T10827 188-189 . denotes .
R8806 T10787 T10800 advmod The,represents
R8830 T10811 T10808 punct ),GGGCGG
R8831 T10812 T10808 punct (,GGGCGG
R8832 T10813 T10808 appos G/A,GGGCGG
R8833 T10814 T10808 punct ),GGGCGG
R8834 T10815 T10808 punct (,GGGCGG
R8835 T10816 T10808 appos C/T,GGGCGG
R8836 T10817 T10808 punct ),GGGCGG
R8837 T10818 T10819 compound consensus,motif
R8838 T10819 T10803 pobj motif,of
R8839 T10820 T10819 acl recognized,motif
R8840 T10821 T10820 agent by,recognized
R8841 T10822 T10821 pobj Sp1,by
R8842 T10823 T10822 cc and,Sp1
R8843 T10824 T10826 amod Sp3,factors
R8844 T10825 T10826 compound transcription,factors
R8845 T10826 T10822 conj factors,Sp1
R8846 T10827 T10800 punct .,represents
R8807 T10788 T10800 nsubj sequence,represents
R8808 T10789 T10788 appos TGGGCGGGAC,sequence
R8809 T10790 T10789 punct ",",TGGGCGGGAC
R8810 T10791 T10793 nsubjpass which,interrupted
R8811 T10792 T10793 auxpass is,interrupted
R8812 T10793 T10789 relcl interrupted,TGGGCGGGAC
R8813 T10794 T10793 prep in,interrupted
R8814 T10795 T10798 det the,fragment
R8815 T10796 T10798 nummod 150,fragment
R8816 T10797 T10798 compound bp,fragment
R8817 T10798 T10794 pobj fragment,in
R8818 T10799 T10800 punct ",",represents
R8819 T10800 T10800 ROOT represents,represents
R8820 T10801 T10802 det a,variant
R8821 T10802 T10800 dobj variant,represents
R8822 T10803 T10802 prep of,variant
R8823 T10804 T10808 det the,GGGCGG
R8824 T10805 T10808 punct (,GGGCGG
R8825 T10806 T10808 nmod G/T,GGGCGG
R8826 T10807 T10808 punct ),GGGCGG
R8827 T10808 T10819 nmod GGGCGG,motif
R8828 T10809 T10808 punct (,GGGCGG
R8829 T10810 T10808 appos G/A,GGGCGG

sentences

Id Subject Object Predicate Lexical cue
T10284 0-189 Sentence denotes The sequence TGGGCGGGAC, which is interrupted in the 150 bp fragment, represents a variant of the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif recognized by Sp1 and Sp3 transcription factors.
T200 0-189 Sentence denotes The sequence TGGGCGGGAC, which is interrupted in the 150 bp fragment, represents a variant of the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif recognized by Sp1 and Sp3 transcription factors.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10411 0-3 DT denotes The
T10412 4-12 NN denotes sequence
T10413 13-23 NN denotes TGGGCGGGAC
T10414 23-24 -COMMA- denotes ,
T10415 25-30 WDT denotes which
T10416 31-33 VB denotes is
T10417 34-45 VB denotes interrupted
T10418 46-48 IN denotes in
T10419 49-52 DT denotes the
T10420 53-59 NN denotes 150 bp
T10421 60-68 NN denotes fragment
T10422 68-69 -COMMA- denotes ,
T10423 70-80 VB denotes represents
T10424 81-82 DT denotes a
T10425 83-90 NN denotes variant
T10426 91-93 IN denotes of
T10427 94-97 DT denotes the
T10428 98-99 -LRB- denotes (
T10429 99-102 NN denotes G/T
T10430 102-103 -RRB- denotes )
T10431 103-109 NN denotes GGGCGG
T10432 109-110 -LRB- denotes (
T10433 110-113 NN denotes G/A
T10434 113-114 -RRB- denotes )
T10435 114-115 -LRB- denotes (
T10436 115-118 NN denotes G/A
T10437 118-119 -RRB- denotes )
T10438 119-120 -LRB- denotes (
T10439 120-123 NN denotes C/T
T10440 123-124 -RRB- denotes )
T10441 125-134 NN denotes consensus
T10442 135-140 NN denotes motif
T10443 141-151 VB denotes recognized
T10444 152-154 IN denotes by
T10445 155-158 NN denotes Sp1
T10446 159-162 CC denotes and
T10447 163-166 NN denotes Sp3
T10448 167-180 NN denotes transcription
T10449 181-188 NN denotes factors
R8449 T10413 T10411 arg1Of TGGGCGGGAC,The
R8450 T10413 T10412 arg1Of TGGGCGGGAC,sequence
R8451 T10413 T10414 arg1Of TGGGCGGGAC,","
R8452 T10413 T10415 arg1Of TGGGCGGGAC,which
R8453 T10413 T10416 arg1Of TGGGCGGGAC,is
R8454 T10413 T10417 arg2Of TGGGCGGGAC,interrupted
R8455 T10413 T10423 arg1Of TGGGCGGGAC,represents
R8456 T10417 T10416 arg2Of interrupted,is
R8457 T10417 T10418 arg1Of interrupted,in
R8458 T10421 T10418 arg2Of fragment,in
R8459 T10421 T10419 arg1Of fragment,the
R8460 T10421 T10420 arg1Of fragment,150 bp
R8461 T10423 T10422 arg1Of represents,","
R8462 T10425 T10423 arg2Of variant,represents
R8463 T10425 T10424 arg1Of variant,a
R8464 T10425 T10426 arg1Of variant,of
R8465 T10429 T10428 arg2Of G/T,(
R8466 T10430 T10428 arg3Of ),(
R8467 T10431 T10428 arg1Of GGGCGG,(
R8468 T10431 T10432 arg1Of GGGCGG,(
R8469 T10431 T10435 arg1Of GGGCGG,(
R8470 T10433 T10432 arg2Of G/A,(
R8471 T10434 T10432 arg3Of ),(
R8472 T10436 T10435 arg2Of G/A,(
R8473 T10437 T10435 arg3Of ),(
R8474 T10439 T10438 arg2Of C/T,(
R8475 T10440 T10438 arg3Of ),(
R8476 T10442 T10426 arg2Of motif,of
R8477 T10442 T10427 arg1Of motif,the
R8478 T10442 T10431 arg1Of motif,GGGCGG
R8479 T10442 T10438 arg1Of motif,(
R8480 T10442 T10441 arg1Of motif,consensus
R8481 T10442 T10443 arg2Of motif,recognized
R8482 T10445 T10446 arg1Of Sp1,and
R8483 T10447 T10446 arg2Of Sp3,and
R8484 T10449 T10443 arg1Of factors,recognized
R8485 T10449 T10444 arg2Of factors,by
R8486 T10449 T10445 arg1Of factors,Sp1
R8487 T10449 T10447 arg1Of factors,Sp3
R8488 T10449 T10448 arg1Of factors,transcription

events-check-again

Id Subject Object Predicate Lexical cue
T11222 94-140 Entity denotes the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif
T11223 141-151 Binding denotes recognized
T11224 141-151 Binding denotes recognized
T11225 155-158 Protein denotes Sp1
T11226 163-166 Protein denotes Sp3
R9159 T11222 T11223 themeOf the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif,recognized
R9161 T11222 T11224 themeOf the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif,recognized
R9162 T11225 T11223 themeOf Sp1,recognized
R9163 T11226 T11224 themeOf Sp3,recognized

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11241 155-158 Protein denotes Sp1
T11242 163-188 Protein denotes Sp3 transcription factors
T11243 141-151 Binding denotes recognized
T11244 141-151 Binding denotes recognized
R9173 T11241 T11243 themeOf Sp1,recognized
R9174 T11242 T11244 themeOf Sp3 transcription factors,recognized

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T10265 94-140 Entity denotes the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif
T10266 141-151 Binding denotes recognized
T10267 141-151 Binding denotes recognized
T10268 155-158 Protein denotes Sp1
T10269 163-166 Protein denotes Sp3
R8370 T10265 T10266 themeOf the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif,recognized
R8372 T10265 T10267 themeOf the (G/T)GGGCGG(G/A)(G/A)(C/T) consensus motif,recognized
R8373 T10268 T10266 themeOf Sp1,recognized
R8374 T10269 T10267 themeOf Sp3,recognized

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10686 155-158 P08047 denotes Sp1
T10687 163-166 Q02447 denotes Sp3