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PMC:1920263 / 23938-24186 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T8726 0-10 Protein denotes Luciferase
T8727 34-49 Transcription denotes transcriptional
T8728 66-69 Protein denotes A3G
T8729 70-78 Entity denotes promoter
T8730 101-108 Regulation denotes altered
T8731 128-131 Protein denotes Vif
T8732 133-136 Protein denotes Tat
T8733 193-203 Regulation denotes modulating
T8734 204-207 Protein denotes A3G
T8735 208-218 Gene_expression denotes expression
R7165 T8727 T8730 themeOf transcriptional,altered
R7166 T8729 T8727 themeOf promoter,transcriptional
R7167 T8729 T8728 partOf promoter,A3G
R7168 T8732 T8730 causeOf Tat,altered
R7169 T8734 T8735 themeOf A3G,expression
R7170 T8735 T8733 themeOf expression,modulating

GO-BP

Id Subject Object Predicate Lexical cue
T8860 34-49 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T8861 226-241 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9503 0-10 NNP denotes Luciferase
T9504 11-17 VBZ denotes assays
T9505 18-24 VBD denotes showed
T9506 25-29 IN denotes that
T9507 30-33 DT denotes the
T9508 34-49 JJ denotes transcriptional
T9509 50-58 NN denotes activity
T9510 59-61 IN denotes of
T9511 62-65 DT denotes the
T9512 66-69 NNP denotes A3G
T9513 70-78 NN denotes promoter
T9514 79-82 VBD denotes was
T9515 83-86 RB denotes not
T9516 87-100 RB denotes significantly
T9517 101-108 VBN denotes altered
T9518 109-111 IN denotes in
T9519 112-115 DT denotes the
T9520 116-124 NN denotes presence
T9521 125-127 IN denotes of
T9522 128-131 NNP denotes Vif
T9523 131-132 , denotes ,
T9524 133-136 NNP denotes Tat
T9525 137-139 CC denotes or
T9526 140-150 NNP denotes HIV-1NL4-3
T9527 151-152 -LRB- denotes (
T9528 152-158 NNP denotes Figure
T9529 159-161 NNP denotes 4A
T9530 161-162 -RRB- denotes )
T9531 162-163 , denotes ,
T9532 164-174 VBG denotes suggesting
T9533 175-179 IN denotes that
T9534 180-185 NNP denotes HIV-1
T9535 186-188 VBZ denotes is
T9536 189-192 RB denotes not
T9537 193-203 VBG denotes modulating
T9538 204-207 NNP denotes A3G
T9539 208-218 NN denotes expression
T9540 219-221 IN denotes on
T9541 222-225 DT denotes the
T9542 226-241 JJ denotes transcriptional
T9543 242-247 NN denotes level
T9544 247-248 . denotes .
R7844 T9503 T9504 compound Luciferase,assays
R7845 T9504 T9505 nsubj assays,showed
R7846 T9505 T9505 ROOT showed,showed
R7847 T9506 T9514 mark that,was
R7848 T9507 T9509 det the,activity
R7849 T9508 T9509 amod transcriptional,activity
R7850 T9509 T9514 nsubj activity,was
R7851 T9510 T9509 prep of,activity
R7852 T9511 T9513 det the,promoter
R7853 T9512 T9513 compound A3G,promoter
R7854 T9513 T9510 pobj promoter,of
R7855 T9514 T9517 auxpass was,altered
R7856 T9515 T9517 neg not,altered
R7857 T9516 T9517 advmod significantly,altered
R7858 T9517 T9505 ccomp altered,showed
R7859 T9518 T9517 prep in,altered
R7860 T9519 T9520 det the,presence
R7861 T9520 T9518 pobj presence,in
R7862 T9521 T9520 prep of,presence
R7863 T9522 T9521 pobj Vif,of
R7864 T9523 T9522 punct ",",Vif
R7865 T9524 T9522 conj Tat,Vif
R7866 T9525 T9524 cc or,Tat
R7867 T9526 T9524 conj HIV-1NL4-3,Tat
R7868 T9527 T9529 punct (,4A
R7869 T9528 T9529 compound Figure,4A
R7870 T9529 T9526 appos 4A,HIV-1NL4-3
R7871 T9530 T9529 punct ),4A
R7872 T9531 T9517 punct ",",altered
R7873 T9532 T9517 advcl suggesting,altered
R7874 T9533 T9537 mark that,modulating
R7875 T9534 T9537 nsubj HIV-1,modulating
R7876 T9535 T9537 aux is,modulating
R7877 T9536 T9537 neg not,modulating
R7878 T9537 T9532 ccomp modulating,suggesting
R7879 T9538 T9539 compound A3G,expression
R7880 T9539 T9537 dobj expression,modulating
R7881 T9540 T9539 prep on,expression
R7882 T9541 T9543 det the,level
R7883 T9542 T9543 amod transcriptional,level
R7884 T9543 T9540 pobj level,on
R7885 T9544 T9505 punct .,showed

sentences

Id Subject Object Predicate Lexical cue
T8848 0-248 Sentence denotes Luciferase assays showed that the transcriptional activity of the A3G promoter was not significantly altered in the presence of Vif, Tat or HIV-1NL4-3 (Figure 4A), suggesting that HIV-1 is not modulating A3G expression on the transcriptional level.
T175 0-248 Sentence denotes Luciferase assays showed that the transcriptional activity of the A3G promoter was not significantly altered in the presence of Vif, Tat or HIV-1NL4-3 (Figure 4A), suggesting that HIV-1 is not modulating A3G expression on the transcriptional level.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9004 0-10 NN denotes Luciferase
T9005 11-17 NN denotes assays
T9006 18-24 VB denotes showed
T9007 25-29 IN denotes that
T9008 30-33 DT denotes the
T9009 34-49 JJ denotes transcriptional
T9010 50-58 NN denotes activity
T9011 59-61 IN denotes of
T9012 62-65 DT denotes the
T9013 66-69 NN denotes A3G
T9014 70-78 NN denotes promoter
T9015 79-82 VB denotes was
T9016 83-86 RB denotes not
T9017 87-100 RB denotes significantly
T9018 101-108 VB denotes altered
T9019 109-111 IN denotes in
T9020 112-115 DT denotes the
T9021 116-124 NN denotes presence
T9022 125-127 IN denotes of
T9023 128-131 NNP denotes Vif
T9024 131-132 -COMMA- denotes ,
T9025 133-136 NN denotes Tat
T9026 137-139 CC denotes or
T9027 140-150 NN denotes HIV-1NL4-3
T9028 151-152 -LRB- denotes (
T9029 152-158 NN denotes Figure
T9030 159-161 NN denotes 4A
T9031 161-162 -RRB- denotes )
T9032 162-163 -COMMA- denotes ,
T9033 164-174 VB denotes suggesting
T9034 175-179 IN denotes that
T9035 180-185 NN denotes HIV-1
T9036 186-188 VB denotes is
T9037 189-192 RB denotes not
T9038 193-203 VB denotes modulating
T9039 204-207 NN denotes A3G
T9040 208-218 NN denotes expression
T9041 219-221 IN denotes on
T9042 222-225 DT denotes the
T9043 226-241 JJ denotes transcriptional
T9044 242-247 NN denotes level
R7374 T9005 T9004 arg1Of assays,Luciferase
R7375 T9005 T9006 arg1Of assays,showed
R7376 T9010 T9008 arg1Of activity,the
R7377 T9010 T9009 arg1Of activity,transcriptional
R7378 T9010 T9011 arg1Of activity,of
R7379 T9010 T9015 arg1Of activity,was
R7380 T9010 T9018 arg2Of activity,altered
R7381 T9014 T9011 arg2Of promoter,of
R7382 T9014 T9012 arg1Of promoter,the
R7383 T9014 T9013 arg1Of promoter,A3G
R7384 T9018 T9006 arg2Of altered,showed
R7385 T9018 T9007 arg1Of altered,that
R7386 T9018 T9015 arg2Of altered,was
R7387 T9018 T9016 arg1Of altered,not
R7388 T9018 T9017 arg1Of altered,significantly
R7389 T9018 T9019 arg1Of altered,in
R7390 T9018 T9032 arg1Of altered,","
R7391 T9018 T9033 modOf altered,suggesting
R7392 T9021 T9019 arg2Of presence,in
R7393 T9021 T9020 arg1Of presence,the
R7394 T9021 T9022 arg1Of presence,of
R7395 T9023 T9024 arg1Of Vif,","
R7396 T9024 T9026 arg1Of ",",or
R7397 T9025 T9024 arg2Of Tat,","
R7398 T9026 T9022 arg2Of or,of
R7399 T9027 T9026 arg2Of HIV-1NL4-3,or
R7400 T9027 T9028 arg1Of HIV-1NL4-3,(
R7401 T9030 T9028 arg2Of 4A,(
R7402 T9030 T9029 arg1Of 4A,Figure
R7403 T9031 T9028 arg3Of ),(
R7404 T9035 T9036 arg1Of HIV-1,is
R7405 T9035 T9038 arg1Of HIV-1,modulating
R7406 T9038 T9033 arg2Of modulating,suggesting
R7407 T9038 T9034 arg1Of modulating,that
R7408 T9038 T9036 arg2Of modulating,is
R7409 T9038 T9037 arg1Of modulating,not
R7410 T9040 T9038 arg2Of expression,modulating
R7411 T9040 T9039 arg1Of expression,A3G
R7412 T9040 T9041 arg1Of expression,on
R7413 T9044 T9041 arg2Of level,on
R7414 T9044 T9042 arg1Of level,the
R7415 T9044 T9043 arg1Of level,transcriptional

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T10156 0-10 Protein denotes Luciferase
T10157 66-69 Protein denotes A3G
T10158 128-131 Protein denotes Vif
T10159 133-136 Protein denotes Tat
T10160 193-203 Regulation denotes modulating true true
T10161 204-207 Protein denotes A3G
T10162 208-218 Gene_expression denotes expression
R8329 T10161 T10162 themeOf A3G,expression
R8330 T10162 T10160 themeOf expression,modulating

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10203 0-10 Protein denotes Luciferase
T10204 66-78 Protein denotes A3G promoter
T10205 128-131 Protein denotes Vif
T10206 133-136 Protein denotes Tat
T10207 204-207 Protein denotes A3G
T10208 208-218 Gene_expression denotes expression
T10209 193-203 Regulation denotes modulating
R8348 T10207 T10208 themeOf A3G,expression
R8349 T10208 T10209 themeOf expression,modulating

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T8785 133-136 Protein denotes Tat
T8786 193-203 Regulation denotes modulating true true
T8787 204-207 Protein denotes A3G
T8788 208-218 Gene_expression denotes expression
T8782 0-10 Protein denotes Luciferase
T8783 66-69 Protein denotes A3G
T8784 128-131 Protein denotes Vif
R7192 T8787 T8788 themeOf A3G,expression
R7193 T8788 T8786 themeOf expression,modulating

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9355 0-10 P08659 denotes Luciferase
T9356 66-69 Q9HC16 denotes A3G
T9357 128-131 P12504 denotes Vif
T9358 133-136 P04610 denotes Tat
T9359 133-136 Q8UMQ1 denotes Tat
T9360 133-136 P04605 denotes Tat
T9361 133-136 P04608 denotes Tat
T9362 204-207 Q9HC16 denotes A3G