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PMC:1920263 / 18678-18870 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T7473 16-31 Entity denotes transcriptional
T7474 38-43 Entity denotes sites
T7475 53-61 Protein denotes APOBEC3G
T7476 63-66 Protein denotes A3G
T7477 156-159 Protein denotes A3G
R6160 T7476 T7475 equivalentTo A3G,APOBEC3G

GO-CC

Id Subject Object Predicate Lexical cue
T7886 79-84 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-BP

Id Subject Object Predicate Lexical cue
T7496 16-31 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7704 0-2 TO denotes To
T7705 3-11 VB denotes identify
T7706 12-15 DT denotes the
T7707 16-31 JJ denotes transcriptional
T7708 32-37 NN denotes start
T7709 38-43 NNS denotes sites
T7710 44-45 -LRB- denotes (
T7711 45-48 NNP denotes TSS
T7712 48-49 -RRB- denotes )
T7713 50-52 IN denotes of
T7714 53-61 NNP denotes APOBEC3G
T7715 62-63 -LRB- denotes (
T7716 63-66 NNP denotes A3G
T7717 66-67 -RRB- denotes )
T7718 68-70 IN denotes in
T7719 71-73 CD denotes A3
T7720 73-76 CD denotes .01
T7721 77-78 NNP denotes T
T7722 79-84 NNS denotes cells
T7723 84-85 , denotes ,
T7724 86-88 PRP denotes we
T7725 89-98 VBD denotes performed
T7726 99-100 CD denotes 5
T7727 100-101 SYM denotes ′
T7728 101-102 : denotes -
T7729 102-107 JJ denotes rapid
T7730 108-121 NN denotes amplification
T7731 122-124 IN denotes of
T7732 125-129 NNP denotes cDNA
T7733 130-134 VBZ denotes ends
T7734 135-143 NN denotes analysis
T7735 144-145 -LRB- denotes (
T7736 145-149 NNP denotes RACE
T7737 149-150 -RRB- denotes )
T7738 151-155 IN denotes with
T7739 156-168 JJ denotes A3G-specific
T7740 169-176 NNS denotes primers
T7741 177-178 -LRB- denotes (
T7742 178-181 VB denotes see
T7743 182-188 NN denotes Figure
T7744 189-190 CD denotes 1
T7745 190-191 -RRB- denotes )
T7746 191-192 . denotes .
R6355 T7704 T7705 aux To,identify
R6357 T7706 T7709 det the,sites
R6358 T7707 T7709 amod transcriptional,sites
R6359 T7708 T7709 compound start,sites
R6360 T7709 T7705 dobj sites,identify
R6361 T7710 T7709 punct (,sites
R6362 T7711 T7709 appos TSS,sites
R6363 T7712 T7709 punct ),sites
R6364 T7713 T7709 prep of,sites
R6365 T7714 T7713 pobj APOBEC3G,of
R6366 T7715 T7714 punct (,APOBEC3G
R6367 T7716 T7714 appos A3G,APOBEC3G
R6368 T7717 T7714 punct ),APOBEC3G
R6369 T7718 T7705 prep in,identify
R6370 T7719 T7722 nummod A3,cells
R6371 T7720 T7722 nummod .01,cells
R6372 T7721 T7722 compound T,cells
R6373 T7722 T7718 pobj cells,in
R6374 T7723 T7725 punct ",",performed
R6375 T7724 T7725 nsubj we,performed
R6376 T7725 T7725 ROOT performed,performed
R6377 T7726 T7730 nummod 5,amplification
R6378 T7727 T7729 punct ′,rapid
R6379 T7728 T7729 punct -,rapid
R6380 T7729 T7730 amod rapid,amplification
R6381 T7730 T7725 dobj amplification,performed
R6382 T7731 T7730 prep of,amplification
R6383 T7732 T7731 pobj cDNA,of
R6384 T7733 T7725 conj ends,performed
R6385 T7734 T7733 dobj analysis,ends
R6386 T7735 T7734 punct (,analysis
R6387 T7736 T7734 appos RACE,analysis
R6388 T7737 T7734 punct ),analysis
R6389 T7738 T7733 prep with,ends
R6390 T7739 T7740 amod A3G-specific,primers
R6391 T7740 T7738 pobj primers,with
R6392 T7741 T7742 punct (,see
R6393 T7742 T7733 advcl see,ends
R6394 T7743 T7742 dobj Figure,see
R6395 T7744 T7743 nummod 1,Figure
R6396 T7745 T7743 punct ),Figure
R6397 T7746 T7725 punct .,performed

sentences

Id Subject Object Predicate Lexical cue
T7489 0-192 Sentence denotes To identify the transcriptional start sites (TSS) of APOBEC3G (A3G) in A3.01 T cells, we performed 5′-rapid amplification of cDNA ends analysis (RACE) with A3G-specific primers (see Figure 1).
T133 0-192 Sentence denotes To identify the transcriptional start sites (TSS) of APOBEC3G (A3G) in A3.01 T cells, we performed 5′-rapid amplification of cDNA ends analysis (RACE) with A3G-specific primers (see Figure 1).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7509 0-2 TO denotes To
T7510 3-11 VB denotes identify
T7511 12-15 DT denotes the
T7512 16-31 JJ denotes transcriptional
T7513 32-37 NN denotes start
T7514 38-43 NN denotes sites
T7515 44-45 -LRB- denotes (
T7516 45-48 NN denotes TSS
T7517 48-49 -RRB- denotes )
T7518 50-52 IN denotes of
T7519 53-61 NN denotes APOBEC3G
T7520 62-63 -LRB- denotes (
T7521 63-66 NN denotes A3G
T7522 66-67 -RRB- denotes )
T7523 68-70 IN denotes in
T7524 71-78 NN denotes A3.01 T
T7525 79-84 NN denotes cells
T7526 84-85 -COMMA- denotes ,
T7527 86-88 PRP denotes we
T7528 89-98 VB denotes performed
T7529 99-107 JJ denotes 5′-rapid
T7530 108-121 NN denotes amplification
T7531 122-124 IN denotes of
T7532 125-129 NN denotes cDNA
T7533 130-134 VB denotes ends
T7534 135-143 NN denotes analysis
T7535 144-145 -LRB- denotes (
T7536 145-149 NN denotes RACE
T7537 149-150 -RRB- denotes )
T7538 151-155 IN denotes with
T7539 156-168 JJ denotes A3G-specific
T7540 169-176 NN denotes primers
T7541 177-178 -LRB- denotes (
T7542 178-181 VB denotes see
T7543 182-188 NN denotes Figure
T7544 189-190 CD denotes 1
T7545 190-191 -RRB- denotes )
R6171 T7510 T7509 arg1Of identify,To
R6172 T7514 T7510 arg2Of sites,identify
R6173 T7514 T7511 arg1Of sites,the
R6174 T7514 T7512 arg1Of sites,transcriptional
R6175 T7514 T7513 arg1Of sites,start
R6176 T7514 T7515 arg1Of sites,(
R6177 T7514 T7518 arg1Of sites,of
R6178 T7516 T7515 arg2Of TSS,(
R6179 T7517 T7515 arg3Of ),(
R6180 T7519 T7518 arg2Of APOBEC3G,of
R6181 T7519 T7520 arg1Of APOBEC3G,(
R6182 T7521 T7520 arg2Of A3G,(
R6183 T7522 T7520 arg3Of ),(
R6184 T7525 T7523 arg2Of cells,in
R6185 T7525 T7524 arg1Of cells,A3.01 T
R6186 T7525 T7528 arg2Of cells,performed
R6187 T7527 T7528 arg1Of we,performed
R6188 T7528 T7526 arg1Of performed,","
R6189 T7530 T7510 arg1Of amplification,identify
R6190 T7530 T7529 arg1Of amplification,5′-rapid
R6191 T7530 T7531 arg1Of amplification,of
R6192 T7530 T7533 arg1Of amplification,ends
R6193 T7532 T7531 arg2Of cDNA,of
R6194 T7533 T7509 modOf ends,To
R6195 T7533 T7523 arg1Of ends,in
R6196 T7533 T7541 arg1Of ends,(
R6197 T7534 T7533 arg2Of analysis,ends
R6198 T7534 T7535 arg1Of analysis,(
R6199 T7534 T7538 arg1Of analysis,with
R6200 T7536 T7535 arg2Of RACE,(
R6201 T7537 T7535 arg3Of ),(
R6202 T7540 T7538 arg2Of primers,with
R6203 T7540 T7539 arg1Of primers,A3G-specific
R6204 T7542 T7541 arg2Of see,(
R6205 T7543 T7542 arg2Of Figure,see
R6206 T7543 T7544 arg1Of Figure,1
R6207 T7545 T7541 arg3Of ),(

events-check-again

Id Subject Object Predicate Lexical cue
T7923 53-61 Protein denotes APOBEC3G
T7924 63-66 Protein denotes A3G
T7925 156-159 Protein denotes A3G
R6542 T7924 T7923 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7930 53-61 Protein denotes APOBEC3G
T7931 63-66 Protein denotes A3G

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T7482 53-61 Protein denotes APOBEC3G
T7483 63-66 Protein denotes A3G
T7484 156-159 Protein denotes A3G
R6161 T7483 T7482 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7678 53-61 Q9HC16 denotes APOBEC3G
T7679 63-66 Q9HC16 denotes A3G
T7680 156-159 Q9HC16 denotes A3G