
PMC:1920263 / 17836-18051
Annnotations
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7203 | 0-5 | NNS | denotes | Cells |
T7204 | 6-10 | VBD | denotes | were |
T7205 | 11-17 | VBN | denotes | washed |
T7206 | 18-20 | IN | denotes | in |
T7207 | 21-24 | NNP | denotes | PBS |
T7208 | 24-25 | , | denotes | , |
T7209 | 26-31 | VBN | denotes | lysed |
T7210 | 32-34 | IN | denotes | in |
T7211 | 35-39 | NNP | denotes | RIPA |
T7212 | 40-41 | -LRB- | denotes | ( |
T7213 | 41-43 | CD | denotes | 25 |
T7214 | 44-46 | NNP | denotes | mM |
T7215 | 47-51 | NNP | denotes | Tris |
T7216 | 52-54 | NNP | denotes | pH |
T7217 | 55-58 | CD | denotes | 8.0 |
T7218 | 58-59 | , | denotes | , |
T7219 | 60-63 | CD | denotes | 137 |
T7220 | 64-66 | NNP | denotes | mM |
T7221 | 67-71 | NNP | denotes | NaCl |
T7222 | 71-72 | , | denotes | , |
T7223 | 73-74 | CD | denotes | 1 |
T7224 | 74-75 | NN | denotes | % |
T7225 | 76-84 | NNP | denotes | Glycerol |
T7226 | 84-85 | , | denotes | , |
T7227 | 86-89 | CD | denotes | 0.5 |
T7228 | 89-90 | NN | denotes | % |
T7229 | 91-97 | NN | denotes | sodium |
T7230 | 98-110 | NN | denotes | deoxycholate |
T7231 | 110-111 | , | denotes | , |
T7232 | 112-113 | CD | denotes | 1 |
T7233 | 113-114 | NN | denotes | % |
T7234 | 115-120 | NN | denotes | NP-40 |
T7235 | 120-121 | , | denotes | , |
T7236 | 122-123 | CD | denotes | 2 |
T7237 | 124-126 | NNP | denotes | mM |
T7238 | 127-131 | NNP | denotes | EDTA |
T7239 | 132-134 | NN | denotes | pH |
T7240 | 135-136 | CD | denotes | 8 |
T7241 | 136-137 | , | denotes | , |
T7242 | 138-141 | CD | denotes | 0.1 |
T7243 | 141-142 | NN | denotes | % |
T7244 | 143-146 | NNP | denotes | SDS |
T7245 | 147-150 | CC | denotes | and |
T7246 | 151-159 | NN | denotes | protease |
T7247 | 160-170 | NNS | denotes | inhibitors |
T7248 | 170-171 | -RRB- | denotes | ) |
T7249 | 172-175 | CC | denotes | and |
T7250 | 176-183 | NNS | denotes | lysates |
T7251 | 184-188 | VBD | denotes | were |
T7252 | 189-196 | VBN | denotes | cleared |
T7253 | 197-199 | IN | denotes | by |
T7254 | 200-214 | NN | denotes | centrifugation |
T7255 | 214-215 | . | denotes | . |
R5982 | T7203 | T7205 | nsubjpass | Cells,washed |
R5983 | T7204 | T7205 | auxpass | were,washed |
R5984 | T7205 | T7205 | ROOT | washed,washed |
R5985 | T7206 | T7205 | prep | in,washed |
R5986 | T7207 | T7206 | pobj | PBS,in |
R5987 | T7208 | T7205 | punct | ",",washed |
R5988 | T7209 | T7205 | conj | lysed,washed |
R5989 | T7210 | T7209 | prep | in,lysed |
R5990 | T7211 | T7210 | pobj | RIPA,in |
R5991 | T7212 | T7216 | punct | (,pH |
R5992 | T7213 | T7216 | nummod | 25,pH |
R5993 | T7214 | T7216 | compound | mM,pH |
R5994 | T7215 | T7216 | compound | Tris,pH |
R5995 | T7216 | T7209 | parataxis | pH,lysed |
R5996 | T7217 | T7216 | nummod | 8.0,pH |
R5997 | T7218 | T7216 | punct | ",",pH |
R5998 | T7219 | T7221 | nummod | 137,NaCl |
R5999 | T7220 | T7221 | compound | mM,NaCl |
R6000 | T7221 | T7216 | appos | NaCl,pH |
R6001 | T7222 | T7221 | punct | ",",NaCl |
R6002 | T7223 | T7224 | nummod | 1,% |
R6003 | T7224 | T7225 | compound | %,Glycerol |
R6004 | T7225 | T7221 | conj | Glycerol,NaCl |
R6005 | T7226 | T7225 | punct | ",",Glycerol |
R6006 | T7227 | T7228 | nummod | 0.5,% |
R6007 | T7228 | T7230 | compound | %,deoxycholate |
R6008 | T7229 | T7230 | compound | sodium,deoxycholate |
R6009 | T7230 | T7225 | appos | deoxycholate,Glycerol |
R6010 | T7231 | T7225 | punct | ",",Glycerol |
R6011 | T7232 | T7233 | nummod | 1,% |
R6012 | T7233 | T7234 | compound | %,NP-40 |
R6013 | T7234 | T7225 | appos | NP-40,Glycerol |
R6014 | T7235 | T7225 | punct | ",",Glycerol |
R6015 | T7236 | T7239 | nummod | 2,pH |
R6016 | T7237 | T7239 | nmod | mM,pH |
R6017 | T7238 | T7239 | compound | EDTA,pH |
R6018 | T7239 | T7225 | appos | pH,Glycerol |
R6019 | T7240 | T7239 | nummod | 8,pH |
R6020 | T7241 | T7239 | punct | ",",pH |
R6021 | T7242 | T7243 | nummod | 0.1,% |
R6022 | T7243 | T7244 | npadvmod | %,SDS |
R6023 | T7244 | T7252 | nsubjpass | SDS,cleared |
R6024 | T7245 | T7244 | cc | and,SDS |
R6025 | T7246 | T7247 | compound | protease,inhibitors |
R6026 | T7247 | T7244 | conj | inhibitors,SDS |
R6027 | T7248 | T7247 | punct | ),inhibitors |
R6028 | T7249 | T7244 | cc | and,SDS |
R6029 | T7250 | T7244 | conj | lysates,SDS |
R6030 | T7251 | T7252 | auxpass | were,cleared |
R6031 | T7252 | T7205 | conj | cleared,washed |
R6032 | T7253 | T7252 | agent | by,cleared |
R6033 | T7254 | T7253 | pobj | centrifugation,by |
R6034 | T7255 | T7252 | punct | .,cleared |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6856 | 0-215 | Sentence | denotes | Cells were washed in PBS, lysed in RIPA (25 mM Tris pH 8.0, 137 mM NaCl, 1% Glycerol, 0.5% sodium deoxycholate, 1% NP-40, 2 mM EDTA pH 8, 0.1% SDS and protease inhibitors) and lysates were cleared by centrifugation. |
T126 | 0-215 | Sentence | denotes | Cells were washed in PBS, lysed in RIPA (25 mM Tris pH 8.0, 137 mM NaCl, 1% Glycerol, 0.5% sodium deoxycholate, 1% NP-40, 2 mM EDTA pH 8, 0.1% SDS and protease inhibitors) and lysates were cleared by centrifugation. |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6950 | 0-5 | NN | denotes | Cells |
T6951 | 6-10 | VB | denotes | were |
T6952 | 11-17 | VB | denotes | washed |
T6953 | 18-20 | IN | denotes | in |
T6954 | 21-24 | NNP | denotes | PBS |
T6955 | 24-25 | -COMMA- | denotes | , |
T6956 | 26-31 | VB | denotes | lysed |
T6957 | 32-34 | IN | denotes | in |
T6958 | 35-39 | NN | denotes | RIPA |
T6959 | 40-41 | -LRB- | denotes | ( |
T6960 | 41-46 | NN | denotes | 25 mM |
T6961 | 47-51 | NN | denotes | Tris |
T6962 | 52-54 | NN | denotes | pH |
T6963 | 55-58 | CD | denotes | 8.0 |
T6964 | 58-59 | -COMMA- | denotes | , |
T6965 | 60-66 | NN | denotes | 137 mM |
T6966 | 67-71 | NN | denotes | NaCl |
T6967 | 71-72 | -COMMA- | denotes | , |
T6968 | 73-74 | CD | denotes | 1 |
T6969 | 74-75 | NN | denotes | % |
T6970 | 76-84 | NN | denotes | Glycerol |
T6971 | 84-85 | -COMMA- | denotes | , |
T6972 | 86-89 | CD | denotes | 0.5 |
T6973 | 89-90 | NN | denotes | % |
T6974 | 91-97 | NN | denotes | sodium |
T6975 | 98-110 | NN | denotes | deoxycholate |
T6976 | 110-111 | -COMMA- | denotes | , |
T6977 | 112-113 | CD | denotes | 1 |
T6978 | 113-114 | NN | denotes | % |
T6979 | 115-120 | NN | denotes | NP-40 |
T6980 | 120-121 | -COMMA- | denotes | , |
T6981 | 122-126 | NN | denotes | 2 mM |
T6982 | 127-131 | NN | denotes | EDTA |
T6983 | 132-134 | NN | denotes | pH |
T6984 | 135-136 | CD | denotes | 8 |
T6985 | 136-137 | -COMMA- | denotes | , |
T6986 | 138-141 | CD | denotes | 0.1 |
T6987 | 141-142 | NN | denotes | % |
T6988 | 143-146 | NN | denotes | SDS |
T6989 | 147-150 | CC | denotes | and |
T6990 | 151-159 | NN | denotes | protease |
T6991 | 160-170 | NN | denotes | inhibitors |
T6992 | 170-171 | -RRB- | denotes | ) |
T6993 | 172-175 | CC | denotes | and |
T6994 | 176-183 | NN | denotes | lysates |
T6995 | 184-188 | VB | denotes | were |
T6996 | 189-196 | VB | denotes | cleared |
T6997 | 197-199 | IN | denotes | by |
T6998 | 200-214 | NN | denotes | centrifugation |
R5748 | T6950 | T6951 | arg1Of | Cells,were |
R5749 | T6950 | T6952 | arg2Of | Cells,washed |
R5750 | T6952 | T6951 | arg2Of | washed,were |
R5751 | T6952 | T6953 | arg1Of | washed,in |
R5752 | T6952 | T6993 | arg1Of | washed,and |
R5753 | T6954 | T6953 | arg2Of | PBS,in |
R5754 | T6954 | T6955 | arg1Of | PBS,"," |
R5755 | T6954 | T6956 | arg2Of | PBS,lysed |
R5756 | T6954 | T6959 | arg1Of | PBS,( |
R5757 | T6956 | T6957 | arg1Of | lysed,in |
R5758 | T6958 | T6957 | arg2Of | RIPA,in |
R5759 | T6962 | T6960 | arg1Of | pH,25 mM |
R5760 | T6962 | T6961 | arg1Of | pH,Tris |
R5761 | T6962 | T6963 | arg1Of | pH,8.0 |
R5762 | T6962 | T6964 | arg1Of | pH,"," |
R5763 | T6964 | T6967 | arg1Of | ",","," |
R5764 | T6966 | T6964 | arg2Of | NaCl,"," |
R5765 | T6966 | T6965 | arg1Of | NaCl,137 mM |
R5766 | T6967 | T6971 | arg1Of | ",","," |
R5767 | T6968 | T6969 | arg1Of | 1,% |
R5768 | T6970 | T6967 | arg2Of | Glycerol,"," |
R5769 | T6970 | T6968 | arg1Of | Glycerol,1 |
R5770 | T6971 | T6976 | arg1Of | ",","," |
R5771 | T6972 | T6973 | arg1Of | 0.5,% |
R5772 | T6975 | T6971 | arg2Of | deoxycholate,"," |
R5773 | T6975 | T6972 | arg1Of | deoxycholate,0.5 |
R5774 | T6975 | T6974 | arg1Of | deoxycholate,sodium |
R5775 | T6976 | T6980 | arg1Of | ",","," |
R5776 | T6977 | T6978 | arg1Of | 1,% |
R5777 | T6979 | T6976 | arg2Of | NP-40,"," |
R5778 | T6979 | T6977 | arg1Of | NP-40,1 |
R5779 | T6980 | T6985 | arg1Of | ",","," |
R5780 | T6983 | T6980 | arg2Of | pH,"," |
R5781 | T6983 | T6981 | arg1Of | pH,2 mM |
R5782 | T6983 | T6982 | arg1Of | pH,EDTA |
R5783 | T6983 | T6984 | arg1Of | pH,8 |
R5784 | T6985 | T6959 | arg2Of | ",",( |
R5785 | T6986 | T6987 | arg1Of | 0.1,% |
R5786 | T6988 | T6986 | arg1Of | SDS,0.1 |
R5787 | T6988 | T6989 | arg1Of | SDS,and |
R5788 | T6989 | T6985 | arg2Of | and,"," |
R5789 | T6991 | T6989 | arg2Of | inhibitors,and |
R5790 | T6991 | T6990 | arg1Of | inhibitors,protease |
R5791 | T6992 | T6959 | arg3Of | ),( |
R5792 | T6994 | T6995 | arg1Of | lysates,were |
R5793 | T6994 | T6996 | arg2Of | lysates,cleared |
R5794 | T6996 | T6993 | arg2Of | cleared,and |
R5795 | T6996 | T6995 | arg2Of | cleared,were |
R5796 | T6998 | T6996 | arg1Of | centrifugation,cleared |
R5797 | T6998 | T6997 | arg2Of | centrifugation,by |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7096 | 52-54 | P0A7Z4 | denotes | pH |
T7097 | 132-134 | P0A7Z4 | denotes | pH |