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PMC:1920263 / 17836-18051 JSONTXT

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bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7203 0-5 NNS denotes Cells
T7204 6-10 VBD denotes were
T7205 11-17 VBN denotes washed
T7206 18-20 IN denotes in
T7207 21-24 NNP denotes PBS
T7208 24-25 , denotes ,
T7209 26-31 VBN denotes lysed
T7210 32-34 IN denotes in
T7211 35-39 NNP denotes RIPA
T7212 40-41 -LRB- denotes (
T7213 41-43 CD denotes 25
T7214 44-46 NNP denotes mM
T7215 47-51 NNP denotes Tris
T7216 52-54 NNP denotes pH
T7217 55-58 CD denotes 8.0
T7218 58-59 , denotes ,
T7219 60-63 CD denotes 137
T7220 64-66 NNP denotes mM
T7221 67-71 NNP denotes NaCl
T7222 71-72 , denotes ,
T7223 73-74 CD denotes 1
T7224 74-75 NN denotes %
T7225 76-84 NNP denotes Glycerol
T7226 84-85 , denotes ,
T7227 86-89 CD denotes 0.5
T7228 89-90 NN denotes %
T7229 91-97 NN denotes sodium
T7230 98-110 NN denotes deoxycholate
T7231 110-111 , denotes ,
T7232 112-113 CD denotes 1
T7233 113-114 NN denotes %
T7234 115-120 NN denotes NP-40
T7235 120-121 , denotes ,
T7236 122-123 CD denotes 2
T7237 124-126 NNP denotes mM
T7238 127-131 NNP denotes EDTA
T7239 132-134 NN denotes pH
T7240 135-136 CD denotes 8
T7241 136-137 , denotes ,
T7242 138-141 CD denotes 0.1
T7243 141-142 NN denotes %
T7244 143-146 NNP denotes SDS
T7245 147-150 CC denotes and
T7246 151-159 NN denotes protease
T7247 160-170 NNS denotes inhibitors
T7248 170-171 -RRB- denotes )
T7249 172-175 CC denotes and
T7250 176-183 NNS denotes lysates
T7251 184-188 VBD denotes were
T7252 189-196 VBN denotes cleared
T7253 197-199 IN denotes by
T7254 200-214 NN denotes centrifugation
T7255 214-215 . denotes .
R5982 T7203 T7205 nsubjpass Cells,washed
R5983 T7204 T7205 auxpass were,washed
R5984 T7205 T7205 ROOT washed,washed
R5985 T7206 T7205 prep in,washed
R5986 T7207 T7206 pobj PBS,in
R5987 T7208 T7205 punct ",",washed
R5988 T7209 T7205 conj lysed,washed
R5989 T7210 T7209 prep in,lysed
R5990 T7211 T7210 pobj RIPA,in
R5991 T7212 T7216 punct (,pH
R5992 T7213 T7216 nummod 25,pH
R5993 T7214 T7216 compound mM,pH
R5994 T7215 T7216 compound Tris,pH
R5995 T7216 T7209 parataxis pH,lysed
R5996 T7217 T7216 nummod 8.0,pH
R5997 T7218 T7216 punct ",",pH
R5998 T7219 T7221 nummod 137,NaCl
R5999 T7220 T7221 compound mM,NaCl
R6000 T7221 T7216 appos NaCl,pH
R6001 T7222 T7221 punct ",",NaCl
R6002 T7223 T7224 nummod 1,%
R6003 T7224 T7225 compound %,Glycerol
R6004 T7225 T7221 conj Glycerol,NaCl
R6005 T7226 T7225 punct ",",Glycerol
R6006 T7227 T7228 nummod 0.5,%
R6007 T7228 T7230 compound %,deoxycholate
R6008 T7229 T7230 compound sodium,deoxycholate
R6009 T7230 T7225 appos deoxycholate,Glycerol
R6010 T7231 T7225 punct ",",Glycerol
R6011 T7232 T7233 nummod 1,%
R6012 T7233 T7234 compound %,NP-40
R6013 T7234 T7225 appos NP-40,Glycerol
R6014 T7235 T7225 punct ",",Glycerol
R6015 T7236 T7239 nummod 2,pH
R6016 T7237 T7239 nmod mM,pH
R6017 T7238 T7239 compound EDTA,pH
R6018 T7239 T7225 appos pH,Glycerol
R6019 T7240 T7239 nummod 8,pH
R6020 T7241 T7239 punct ",",pH
R6021 T7242 T7243 nummod 0.1,%
R6022 T7243 T7244 npadvmod %,SDS
R6023 T7244 T7252 nsubjpass SDS,cleared
R6024 T7245 T7244 cc and,SDS
R6025 T7246 T7247 compound protease,inhibitors
R6026 T7247 T7244 conj inhibitors,SDS
R6027 T7248 T7247 punct ),inhibitors
R6028 T7249 T7244 cc and,SDS
R6029 T7250 T7244 conj lysates,SDS
R6030 T7251 T7252 auxpass were,cleared
R6031 T7252 T7205 conj cleared,washed
R6032 T7253 T7252 agent by,cleared
R6033 T7254 T7253 pobj centrifugation,by
R6034 T7255 T7252 punct .,cleared

sentences

Id Subject Object Predicate Lexical cue
T6856 0-215 Sentence denotes Cells were washed in PBS, lysed in RIPA (25 mM Tris pH 8.0, 137 mM NaCl, 1% Glycerol, 0.5% sodium deoxycholate, 1% NP-40, 2 mM EDTA pH 8, 0.1% SDS and protease inhibitors) and lysates were cleared by centrifugation.
T126 0-215 Sentence denotes Cells were washed in PBS, lysed in RIPA (25 mM Tris pH 8.0, 137 mM NaCl, 1% Glycerol, 0.5% sodium deoxycholate, 1% NP-40, 2 mM EDTA pH 8, 0.1% SDS and protease inhibitors) and lysates were cleared by centrifugation.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6950 0-5 NN denotes Cells
T6951 6-10 VB denotes were
T6952 11-17 VB denotes washed
T6953 18-20 IN denotes in
T6954 21-24 NNP denotes PBS
T6955 24-25 -COMMA- denotes ,
T6956 26-31 VB denotes lysed
T6957 32-34 IN denotes in
T6958 35-39 NN denotes RIPA
T6959 40-41 -LRB- denotes (
T6960 41-46 NN denotes 25 mM
T6961 47-51 NN denotes Tris
T6962 52-54 NN denotes pH
T6963 55-58 CD denotes 8.0
T6964 58-59 -COMMA- denotes ,
T6965 60-66 NN denotes 137 mM
T6966 67-71 NN denotes NaCl
T6967 71-72 -COMMA- denotes ,
T6968 73-74 CD denotes 1
T6969 74-75 NN denotes %
T6970 76-84 NN denotes Glycerol
T6971 84-85 -COMMA- denotes ,
T6972 86-89 CD denotes 0.5
T6973 89-90 NN denotes %
T6974 91-97 NN denotes sodium
T6975 98-110 NN denotes deoxycholate
T6976 110-111 -COMMA- denotes ,
T6977 112-113 CD denotes 1
T6978 113-114 NN denotes %
T6979 115-120 NN denotes NP-40
T6980 120-121 -COMMA- denotes ,
T6981 122-126 NN denotes 2 mM
T6982 127-131 NN denotes EDTA
T6983 132-134 NN denotes pH
T6984 135-136 CD denotes 8
T6985 136-137 -COMMA- denotes ,
T6986 138-141 CD denotes 0.1
T6987 141-142 NN denotes %
T6988 143-146 NN denotes SDS
T6989 147-150 CC denotes and
T6990 151-159 NN denotes protease
T6991 160-170 NN denotes inhibitors
T6992 170-171 -RRB- denotes )
T6993 172-175 CC denotes and
T6994 176-183 NN denotes lysates
T6995 184-188 VB denotes were
T6996 189-196 VB denotes cleared
T6997 197-199 IN denotes by
T6998 200-214 NN denotes centrifugation
R5748 T6950 T6951 arg1Of Cells,were
R5749 T6950 T6952 arg2Of Cells,washed
R5750 T6952 T6951 arg2Of washed,were
R5751 T6952 T6953 arg1Of washed,in
R5752 T6952 T6993 arg1Of washed,and
R5753 T6954 T6953 arg2Of PBS,in
R5754 T6954 T6955 arg1Of PBS,","
R5755 T6954 T6956 arg2Of PBS,lysed
R5756 T6954 T6959 arg1Of PBS,(
R5757 T6956 T6957 arg1Of lysed,in
R5758 T6958 T6957 arg2Of RIPA,in
R5759 T6962 T6960 arg1Of pH,25 mM
R5760 T6962 T6961 arg1Of pH,Tris
R5761 T6962 T6963 arg1Of pH,8.0
R5762 T6962 T6964 arg1Of pH,","
R5763 T6964 T6967 arg1Of ",",","
R5764 T6966 T6964 arg2Of NaCl,","
R5765 T6966 T6965 arg1Of NaCl,137 mM
R5766 T6967 T6971 arg1Of ",",","
R5767 T6968 T6969 arg1Of 1,%
R5768 T6970 T6967 arg2Of Glycerol,","
R5769 T6970 T6968 arg1Of Glycerol,1
R5770 T6971 T6976 arg1Of ",",","
R5771 T6972 T6973 arg1Of 0.5,%
R5772 T6975 T6971 arg2Of deoxycholate,","
R5773 T6975 T6972 arg1Of deoxycholate,0.5
R5774 T6975 T6974 arg1Of deoxycholate,sodium
R5775 T6976 T6980 arg1Of ",",","
R5776 T6977 T6978 arg1Of 1,%
R5777 T6979 T6976 arg2Of NP-40,","
R5778 T6979 T6977 arg1Of NP-40,1
R5779 T6980 T6985 arg1Of ",",","
R5780 T6983 T6980 arg2Of pH,","
R5781 T6983 T6981 arg1Of pH,2 mM
R5782 T6983 T6982 arg1Of pH,EDTA
R5783 T6983 T6984 arg1Of pH,8
R5784 T6985 T6959 arg2Of ",",(
R5785 T6986 T6987 arg1Of 0.1,%
R5786 T6988 T6986 arg1Of SDS,0.1
R5787 T6988 T6989 arg1Of SDS,and
R5788 T6989 T6985 arg2Of and,","
R5789 T6991 T6989 arg2Of inhibitors,and
R5790 T6991 T6990 arg1Of inhibitors,protease
R5791 T6992 T6959 arg3Of ),(
R5792 T6994 T6995 arg1Of lysates,were
R5793 T6994 T6996 arg2Of lysates,cleared
R5794 T6996 T6993 arg2Of cleared,and
R5795 T6996 T6995 arg2Of cleared,were
R5796 T6998 T6996 arg1Of centrifugation,cleared
R5797 T6998 T6997 arg2Of centrifugation,by

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7096 52-54 P0A7Z4 denotes pH
T7097 132-134 P0A7Z4 denotes pH