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PMC:1920263 / 13744-14048 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T4954 90-93 Protein denotes Sp1
T4955 181-184 Protein denotes Sp1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5553 0-4 NNP denotes EMSA
T5554 5-11 NNS denotes probes
T5555 12-16 VBD denotes were
T5556 17-26 VBN denotes generated
T5557 27-29 IN denotes by
T5558 30-39 VBG denotes annealing
T5559 40-43 DT denotes the
T5560 44-53 VBG denotes following
T5561 54-67 JJ denotes complementary
T5562 68-84 NNS denotes oligonucleotides
T5563 84-85 : denotes :
T5564 86-93 JJ denotes APO-Sp1
T5565 93-94 NN denotes /
T5566 94-95 CD denotes 3
T5567 95-96 , denotes ,
T5568 97-98 CD denotes 5
T5569 98-99 SYM denotes ′
T5570 99-100 : denotes -
T5571 101-133 NN denotes CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3
T5572 133-134 NN denotes ′
T5573 135-138 CC denotes and
T5574 139-140 CD denotes 5
T5575 140-141 SYM denotes ′
T5576 141-142 : denotes -
T5577 142-174 NN denotes GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3
T5578 174-175 NN denotes ′
T5579 175-176 : denotes ;
T5580 177-184 NNP denotes APO-Sp1
T5581 184-185 NNP denotes /
T5582 185-189 CD denotes 3mut
T5583 189-190 , denotes ,
T5584 191-192 CD denotes 5
T5585 192-193 SYM denotes ′
T5586 193-194 : denotes -
T5587 195-227 NN denotes CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3
T5588 227-228 NN denotes ′
T5589 229-232 CC denotes and
T5590 233-234 CD denotes 5
T5591 234-235 SYM denotes ′
T5592 235-236 : denotes -
T5593 237-269 NN denotes GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3
T5594 269-270 NN denotes ′
T5595 271-280 VBG denotes according
T5596 281-283 TO denotes to
T5597 284-292 JJ denotes standard
T5598 293-303 NNS denotes procedures
T5599 303-304 . denotes .
R4618 T5553 T5554 compound EMSA,probes
R4619 T5554 T5556 nsubjpass probes,generated
R4620 T5555 T5556 auxpass were,generated
R4621 T5556 T5556 ROOT generated,generated
R4622 T5557 T5556 prep by,generated
R4623 T5558 T5557 pcomp annealing,by
R4624 T5559 T5562 det the,oligonucleotides
R4625 T5560 T5562 amod following,oligonucleotides
R4626 T5561 T5562 amod complementary,oligonucleotides
R4627 T5562 T5558 dobj oligonucleotides,annealing
R4628 T5563 T5562 punct :,oligonucleotides
R4629 T5564 T5565 compound APO-Sp1,/
R4630 T5565 T5562 appos /,oligonucleotides
R4631 T5566 T5565 nummod 3,/
R4632 T5567 T5565 punct ",",/
R4633 T5568 T5572 nummod 5,′
R4634 T5569 T5571 punct ′,CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3
R4635 T5570 T5571 punct -,CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3
R4636 T5571 T5572 compound CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3,′
R4637 T5572 T5565 appos ′,/
R4638 T5573 T5572 cc and,′
R4639 T5574 T5577 nummod 5,GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3
R4640 T5575 T5577 punct ′,GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3
R4641 T5576 T5577 punct -,GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3
R4642 T5577 T5578 compound GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3,′
R4643 T5578 T5572 conj ′,′
R4644 T5579 T5565 punct ;,/
R4645 T5580 T5581 compound APO-Sp1,/
R4646 T5581 T5595 nsubj /,according
R4647 T5582 T5581 nummod 3mut,/
R4648 T5583 T5581 punct ",",/
R4649 T5584 T5588 nummod 5,′
R4650 T5585 T5587 punct ′,CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3
R4651 T5586 T5587 punct -,CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3
R4652 T5587 T5588 compound CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3,′
R4653 T5588 T5581 appos ′,/
R4654 T5589 T5588 cc and,′
R4655 T5590 T5593 nummod 5,GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3
R4656 T5591 T5593 punct ′,GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3
R4657 T5592 T5593 punct -,GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3
R4658 T5593 T5594 compound GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3,′
R4661 T5596 T5595 prep to,according
R4662 T5597 T5598 amod standard,procedures
R4663 T5598 T5596 pobj procedures,to
R4664 T5599 T5556 punct .,generated
R4659 T5594 T5588 conj ′,′
R4660 T5595 T5556 prep according,generated

sentences

Id Subject Object Predicate Lexical cue
T4978 0-304 Sentence denotes EMSA probes were generated by annealing the following complementary oligonucleotides: APO-Sp1/3, 5′- CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3′ and 5′-GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3′; APO-Sp1/3mut, 5′- CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3′ and 5′- GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′ according to standard procedures.
T90 0-304 Sentence denotes EMSA probes were generated by annealing the following complementary oligonucleotides: APO-Sp1/3, 5′- CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3′ and 5′-GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3′; APO-Sp1/3mut, 5′- CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3′ and 5′- GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′ according to standard procedures.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5120 0-4 NN denotes EMSA
T5121 5-11 NN denotes probes
T5122 12-16 VB denotes were
T5123 17-26 VB denotes generated
T5124 27-29 IN denotes by
T5125 30-39 VB denotes annealing
T5126 40-43 DT denotes the
T5127 44-53 VB denotes following
T5128 54-67 JJ denotes complementary
T5129 68-84 NN denotes oligonucleotides
T5130 84-85 -COLON- denotes :
T5131 86-95 NN denotes APO-Sp1/3
T5132 95-96 -COMMA- denotes ,
T5133 97-100 JJ denotes 5′-
T5134 101-134 NN denotes CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3′
T5135 135-138 CC denotes and
T5136 139-175 NN denotes 5′-GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3′
T5137 175-176 -COLON- denotes ;
T5138 177-189 NN denotes APO-Sp1/3mut
T5139 189-190 -COMMA- denotes ,
T5140 191-194 JJ denotes 5′-
T5141 195-228 NN denotes CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3′
T5142 229-232 CC denotes and
T5143 233-236 CD denotes 5′-
T5144 237-270 NN denotes GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′
T5145 271-280 VB denotes according
T5146 281-283 TO denotes to
T5147 284-292 JJ denotes standard
T5148 293-303 NN denotes procedures
R4197 T5121 T5120 arg1Of probes,EMSA
R4198 T5121 T5122 arg1Of probes,were
R4199 T5121 T5123 arg2Of probes,generated
R4200 T5123 T5122 arg2Of generated,were
R4201 T5123 T5124 arg1Of generated,by
R4202 T5123 T5130 arg1Of generated,:
R4203 T5123 T5131 arg1Of generated,APO-Sp1/3
R4204 T5123 T5145 arg1Of generated,according
R4205 T5125 T5124 arg2Of annealing,by
R4206 T5129 T5125 arg2Of oligonucleotides,annealing
R4207 T5129 T5126 arg1Of oligonucleotides,the
R4208 T5129 T5127 arg1Of oligonucleotides,following
R4209 T5129 T5128 arg1Of oligonucleotides,complementary
R4210 T5131 T5132 arg1Of APO-Sp1/3,","
R4211 T5131 T5139 arg1Of APO-Sp1/3,","
R4212 T5134 T5133 arg1Of CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3′,5′-
R4213 T5134 T5135 arg1Of CCAGCTGGGCGGGACCACCAGGGGAGGGGC-3′,and
R4214 T5135 T5132 arg2Of and,","
R4215 T5136 T5137 arg1Of 5′-GCCCCTCCCCTGGTGGTCCCGCCCAGCTGG-3′,;
R4216 T5137 T5135 arg2Of ;,and
R4217 T5138 T5137 arg2Of APO-Sp1/3mut,;
R4218 T5140 T5141 arg1Of 5′-,CCAGCTGTTCGGGACCACCAGGGGAGGGGC-3′
R4219 T5140 T5142 arg1Of 5′-,and
R4220 T5143 T5142 arg2Of 5′-,and
R4221 T5144 T5139 arg2Of GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′,","
R4222 T5144 T5140 arg1Of GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′,5′-
R4223 T5144 T5143 arg1Of GCCCCTCCCCTGGTGGTCCCGAACAGCTGG-3′,5′-
R4224 T5146 T5145 arg2Of to,according
R4225 T5148 T5146 arg2Of procedures,to
R4226 T5148 T5147 arg1Of procedures,standard

events-check-again

Id Subject Object Predicate Lexical cue
T5903 90-93 Protein denotes Sp1
T5904 181-184 Protein denotes Sp1

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5912 86-89 Protein denotes APO
T5913 90-93 Protein denotes Sp1
T5914 177-180 Protein denotes APO
T5915 181-184 Protein denotes Sp1

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4964 90-93 Protein denotes Sp1
T4965 181-184 Protein denotes Sp1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5370 90-93 P08047 denotes Sp1
T5371 181-184 P08047 denotes Sp1