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PMC:1920263 / 1108-1433 JSONTXT

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test2

Id Subject Object Predicate Lexical cue
T38 204-210 Entity denotes GC-box
T39 225-232 Binding denotes binding
T40 279-305 Protein denotes specificity protein (Sp) 1
T41 310-313 Protein denotes Sp3
R24 T38 T39 themeOf GC-box,binding
R25 T40 T39 themeOf specificity protein (Sp) 1,binding
R26 T41 T39 themeOf Sp3,binding

GO-CC

Id Subject Object Predicate Lexical cue
T557 134-143 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

GO-MF

Id Subject Object Predicate Lexical cue
T554 225-232 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-BP

Id Subject Object Predicate Lexical cue
T74 257-270 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T507 0-3 DT denotes the
T508 4-9 JJ denotes major
T509 10-25 JJ denotes transcriptional
T510 26-31 NN denotes start
T511 32-36 NN denotes site
T512 36-37 -RRB- denotes )
T513 38-41 CC denotes and
T514 42-45 VBD denotes was
T515 46-55 VBN denotes abolished
T516 56-61 IN denotes after
T517 62-70 NN denotes mutation
T518 71-73 IN denotes of
T519 74-78 DT denotes this
T520 79-82 NN denotes DNA
T521 83-90 NN denotes element
T522 90-91 . denotes .
T523 92-107 JJ denotes Electrophoretic
T524 108-116 NN denotes mobility
T525 117-122 NN denotes shift
T526 123-129 NNS denotes assays
T527 130-133 CC denotes and
T528 134-143 NN denotes chromatin
T529 144-163 NN denotes immunoprecipitation
T530 164-170 NNS denotes assays
T531 171-183 VBD denotes demonstrated
T532 184-188 IN denotes that
T533 189-192 DT denotes the
T534 193-203 VBN denotes identified
T535 204-210 NNP denotes GC-box
T536 211-222 VBD denotes represented
T537 223-224 DT denotes a
T538 225-232 JJ denotes binding
T539 233-237 NN denotes site
T540 238-241 IN denotes for
T541 242-245 DT denotes the
T542 246-256 JJ denotes ubiquitous
T543 257-270 NN denotes transcription
T544 271-278 NNS denotes factors
T545 279-290 NN denotes specificity
T546 291-298 NN denotes protein
T547 299-300 -LRB- denotes (
T548 300-302 NNP denotes Sp
T549 302-303 -RRB- denotes )
T550 304-305 CD denotes 1
T551 306-309 CC denotes and
T552 310-313 NNP denotes Sp3
T553 313-314 . denotes .
T11945 271-278 NNS denotes factors
R455 T507 T511 det the,site
R456 T508 T511 amod major,site
R457 T509 T511 amod transcriptional,site
R458 T510 T511 compound start,site
R462 T514 T515 auxpass was,abolished
R464 T516 T515 prep after,abolished
R465 T517 T516 pobj mutation,after
R466 T518 T517 prep of,mutation
R467 T519 T521 det this,element
R468 T520 T521 compound DNA,element
R469 T521 T518 pobj element,of
R471 T523 T526 amod Electrophoretic,assays
R472 T524 T525 compound mobility,shift
R473 T525 T526 compound shift,assays
R474 T526 T531 nsubj assays,demonstrated
R475 T527 T526 cc and,assays
R476 T528 T530 nmod chromatin,assays
R477 T529 T530 compound immunoprecipitation,assays
R478 T530 T526 conj assays,assays
R479 T531 T531 ROOT demonstrated,demonstrated
R480 T532 T536 mark that,represented
R483 T535 T536 nsubj GC-box,represented
R484 T536 T531 ccomp represented,demonstrated
R485 T537 T539 det a,site
R486 T538 T539 amod binding,site
R487 T539 T536 dobj site,represented
R488 T540 T539 prep for,site
R489 T541 T546 det the,protein
R490 T542 T544 amod ubiquitous,factors
R491 T543 T544 compound transcription,factors
R492 T544 T546 compound factors,protein
R493 T545 T546 compound specificity,protein
R494 T546 T540 pobj protein,for
R495 T547 T548 punct (,Sp
R496 T548 T546 appos Sp,protein
R497 T549 T531 punct ),demonstrated
R498 T550 T549 nummod 1,)
R499 T551 T550 cc and,1
R500 T552 T550 conj Sp3,1
R501 T553 T531 punct .,demonstrated
R481 T533 T535 det the,GC-box
R482 T534 T535 amod identified,GC-box

sentences

Id Subject Object Predicate Lexical cue
T72 92-314 Sentence denotes Electrophoretic mobility shift assays and chromatin immunoprecipitation assays demonstrated that the identified GC-box represented a binding site for the ubiquitous transcription factors specificity protein (Sp) 1 and Sp3.
T10 92-314 Sentence denotes Electrophoretic mobility shift assays and chromatin immunoprecipitation assays demonstrated that the identified GC-box represented a binding site for the ubiquitous transcription factors specificity protein (Sp) 1 and Sp3.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T248 0-3 DT denotes the
T249 4-9 JJ denotes major
T250 10-25 JJ denotes transcriptional
T251 26-31 NN denotes start
T252 32-36 NN denotes site
T253 36-37 -RRB- denotes )
T254 38-41 CC denotes and
T255 42-45 VB denotes was
T256 46-55 VB denotes abolished
T257 56-61 IN denotes after
T258 62-70 NN denotes mutation
T259 71-73 IN denotes of
T260 74-78 DT denotes this
T261 79-82 NN denotes DNA
T262 83-90 NN denotes element
T263 92-107 JJ denotes Electrophoretic
T264 108-116 NN denotes mobility
T265 117-122 NN denotes shift
T266 123-129 NN denotes assays
T267 130-133 CC denotes and
T268 134-143 NN denotes chromatin
T269 144-163 NN denotes immunoprecipitation
T270 164-170 NN denotes assays
T271 171-183 VB denotes demonstrated
T272 184-188 IN denotes that
T273 189-192 DT denotes the
T274 193-203 VB denotes identified
T275 204-210 NN denotes GC-box
T276 211-222 VB denotes represented
T277 223-224 DT denotes a
T278 225-232 VB denotes binding
T279 233-237 NN denotes site
T280 238-241 IN denotes for
T281 242-245 DT denotes the
T282 246-256 JJ denotes ubiquitous
T283 257-270 NN denotes transcription
T284 271-278 NN denotes factors
T285 279-290 NN denotes specificity
T286 291-298 NN denotes protein
T287 299-300 -LRB- denotes (
T288 300-302 NN denotes Sp
T289 302-303 -RRB- denotes )
T290 304-305 CD denotes 1
T291 306-309 CC denotes and
T292 310-313 NN denotes Sp3
T11430 271-278 NN denotes factors
R224 T252 T248 arg1Of site,the
R225 T252 T249 arg1Of site,major
R226 T252 T250 arg1Of site,transcriptional
R227 T252 T251 arg1Of site,start
R229 T256 T254 arg2Of abolished,and
R230 T256 T255 arg2Of abolished,was
R231 T256 T257 arg1Of abolished,after
R232 T258 T257 arg2Of mutation,after
R233 T258 T259 arg1Of mutation,of
R234 T262 T259 arg2Of element,of
R235 T262 T260 arg1Of element,this
R236 T262 T261 arg1Of element,DNA
R237 T266 T263 arg1Of assays,Electrophoretic
R238 T266 T264 arg1Of assays,mobility
R239 T266 T265 arg1Of assays,shift
R240 T266 T267 arg1Of assays,and
R241 T267 T271 arg1Of and,demonstrated
R242 T270 T267 arg2Of assays,and
R243 T270 T268 arg1Of assays,chromatin
R244 T270 T269 arg1Of assays,immunoprecipitation
R245 T275 T273 arg1Of GC-box,the
R246 T275 T274 arg2Of GC-box,identified
R247 T275 T276 arg1Of GC-box,represented
R248 T276 T271 arg2Of represented,demonstrated
R249 T276 T272 arg1Of represented,that
R250 T279 T276 arg2Of site,represented
R251 T279 T277 arg1Of site,a
R252 T279 T278 arg1Of site,binding
R253 T279 T280 arg1Of site,for
R254 T286 T281 arg1Of protein,the
R255 T286 T282 arg1Of protein,ubiquitous
R256 T286 T283 arg1Of protein,transcription
R257 T286 T284 arg1Of protein,factors
R258 T286 T285 arg1Of protein,specificity
R259 T286 T287 arg1Of protein,(
R260 T286 T290 arg1Of protein,1
R261 T286 T291 arg1Of protein,and
R262 T288 T287 arg2Of Sp,(
R263 T289 T287 arg3Of ),(
R264 T291 T280 arg2Of and,for
R265 T292 T291 arg2Of Sp3,and

events-check-again

Id Subject Object Predicate Lexical cue
T673 204-210 Entity denotes GC-box
T674 225-232 Binding denotes binding
T675 225-232 Binding denotes binding
T676 279-305 Protein denotes specificity protein (Sp) 1
T677 310-313 Protein denotes Sp3
R555 T673 T674 themeOf GC-box,binding
R557 T673 T675 themeOf GC-box,binding
R558 T676 T674 themeOf specificity protein (Sp) 1,binding
R559 T677 T675 themeOf Sp3,binding

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T695 46-55 Negative_regulation denotes abolished
T696 257-305 Protein denotes transcription factors specificity protein (Sp) 1
T697 310-313 Protein denotes Sp3
T698 204-210 Entity denotes GC-box
T699 225-232 Binding denotes binding
T700 225-232 Binding denotes binding
R568 T696 T699 themeOf transcription factors specificity protein (Sp) 1,binding
R569 T697 T700 themeOf Sp3,binding
R570 T698 T699 Site GC-box,binding
R571 T698 T700 Site GC-box,binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T59 204-210 Entity denotes GC-box
T60 225-232 Binding denotes binding
T61 225-232 Binding denotes binding
T62 279-305 Protein denotes specificity protein (Sp) 1
T63 310-313 Protein denotes Sp3
R37 T59 T60 themeOf GC-box,binding
R39 T59 T61 themeOf GC-box,binding
R40 T62 T60 themeOf specificity protein (Sp) 1,binding
R41 T63 T61 themeOf Sp3,binding

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T308 310-313 Q02447 denotes Sp3