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PMC:1920263 / 10770-10986 JSONTXT

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GO-BP

Id Subject Object Predicate Lexical cue
T3869 82-91 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4042 0-3 DT denotes The
T4043 4-13 VBG denotes following
T4044 14-21 NNS denotes primers
T4045 22-26 VBD denotes were
T4046 27-31 VBN denotes used
T4047 31-32 : denotes :
T4048 33-44 NN denotes RACE-APO3G1
T4049 45-46 -LRB- denotes (
T4050 46-47 CD denotes 5
T4051 47-48 SYM denotes ′
T4052 48-49 : denotes -
T4053 49-70 NN denotes TATCCCTTGTACACTTTGT-3
T4054 70-71 NN denotes ′
T4055 71-72 -RRB- denotes )
T4056 73-76 IN denotes for
T4057 77-81 NNP denotes cDNA
T4058 82-91 NN denotes synthesis
T4059 91-92 , denotes ,
T4060 93-104 NN denotes RACE-APO3G2
T4061 105-106 -LRB- denotes (
T4062 106-107 CD denotes 5
T4063 107-108 SYM denotes ′
T4064 108-109 : denotes -
T4065 109-129 NN denotes CATACTCCTGGTCACGAT-3
T4066 129-130 NN denotes ′
T4067 130-131 -RRB- denotes )
T4068 132-135 IN denotes for
T4069 136-139 DT denotes the
T4070 140-145 JJ denotes first
T4071 146-149 NNP denotes PCR
T4072 150-153 CC denotes and
T4073 154-168 NNP denotes RACE-APO3Gnest
T4074 169-170 -LRB- denotes (
T4075 170-171 CD denotes 5
T4076 171-172 SYM denotes ′
T4077 172-173 : denotes -
T4078 173-194 NN denotes GAATACACCTGGCCTCGAA-3
T4079 194-195 NN denotes ′
T4080 195-196 -RRB- denotes )
T4081 197-200 IN denotes for
T4082 201-204 DT denotes the
T4083 205-211 JJ denotes nested
T4084 212-215 NNP denotes PCR
T4085 215-216 . denotes .
R3313 T4042 T4044 det The,primers
R3314 T4043 T4044 amod following,primers
R3315 T4044 T4046 nsubjpass primers,used
R3316 T4045 T4046 auxpass were,used
R3317 T4046 T4048 ccomp used,RACE-APO3G1
R3318 T4047 T4048 punct :,RACE-APO3G1
R3319 T4048 T4048 ROOT RACE-APO3G1,RACE-APO3G1
R3320 T4049 T4050 punct (,5
R3321 T4050 T4054 nummod 5,′
R3322 T4051 T4050 punct ′,5
R3323 T4052 T4053 punct -,TATCCCTTGTACACTTTGT-3
R3324 T4053 T4054 compound TATCCCTTGTACACTTTGT-3,′
R3325 T4054 T4048 appos ′,RACE-APO3G1
R3326 T4055 T4048 punct ),RACE-APO3G1
R3327 T4056 T4048 prep for,RACE-APO3G1
R3328 T4057 T4058 compound cDNA,synthesis
R3329 T4058 T4056 pobj synthesis,for
R3330 T4059 T4048 punct ",",RACE-APO3G1
R3331 T4060 T4048 appos RACE-APO3G2,RACE-APO3G1
R3332 T4061 T4062 punct (,5
R3333 T4062 T4065 meta 5,CATACTCCTGGTCACGAT-3
R3334 T4063 T4062 punct ′,5
R3335 T4064 T4065 punct -,CATACTCCTGGTCACGAT-3
R3336 T4065 T4066 compound CATACTCCTGGTCACGAT-3,′
R3337 T4066 T4060 appos ′,RACE-APO3G2
R3338 T4067 T4060 punct ),RACE-APO3G2
R3339 T4068 T4048 prep for,RACE-APO3G1
R3340 T4069 T4071 det the,PCR
R3341 T4070 T4071 amod first,PCR
R3342 T4071 T4068 pobj PCR,for
R3343 T4072 T4071 cc and,PCR
R3344 T4073 T4071 conj RACE-APO3Gnest,PCR
R3345 T4074 T4075 punct (,5
R3346 T4075 T4078 acl 5,GAATACACCTGGCCTCGAA-3
R3347 T4076 T4078 punct ′,GAATACACCTGGCCTCGAA-3
R3348 T4077 T4078 punct -,GAATACACCTGGCCTCGAA-3
R3349 T4078 T4079 compound GAATACACCTGGCCTCGAA-3,′
R3350 T4079 T4071 appos ′,PCR
R3351 T4080 T4048 punct ),RACE-APO3G1
R3352 T4081 T4048 prep for,RACE-APO3G1
R3353 T4082 T4084 det the,PCR
R3354 T4083 T4084 amod nested,PCR
R3355 T4084 T4081 pobj PCR,for
R3356 T4085 T4048 punct .,RACE-APO3G1

sentences

Id Subject Object Predicate Lexical cue
T3866 0-216 Sentence denotes The following primers were used: RACE-APO3G1 (5′-TATCCCTTGTACACTTTGT-3′) for cDNA synthesis, RACE-APO3G2 (5′-CATACTCCTGGTCACGAT-3′) for the first PCR and RACE-APO3Gnest (5′-GAATACACCTGGCCTCGAA-3′) for the nested PCR.
T71 0-216 Sentence denotes The following primers were used: RACE-APO3G1 (5′-TATCCCTTGTACACTTTGT-3′) for cDNA synthesis, RACE-APO3G2 (5′-CATACTCCTGGTCACGAT-3′) for the first PCR and RACE-APO3Gnest (5′-GAATACACCTGGCCTCGAA-3′) for the nested PCR.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3918 0-3 DT denotes The
T3919 4-13 VB denotes following
T3920 14-21 NN denotes primers
T3921 22-26 VB denotes were
T3922 27-31 VB denotes used
T3923 31-32 -COLON- denotes :
T3924 33-44 NN denotes RACE-APO3G1
T3925 45-46 -LRB- denotes (
T3926 46-71 NN denotes 5′-TATCCCTTGTACACTTTGT-3′
T3927 71-72 -RRB- denotes )
T3928 73-76 IN denotes for
T3929 77-81 NN denotes cDNA
T3930 82-91 NN denotes synthesis
T3931 91-92 -COMMA- denotes ,
T3932 93-104 NN denotes RACE-APO3G2
T3933 105-106 -LRB- denotes (
T3934 106-130 NN denotes 5′-CATACTCCTGGTCACGAT-3′
T3935 130-131 -RRB- denotes )
T3936 132-135 IN denotes for
T3937 136-139 DT denotes the
T3938 140-145 JJ denotes first
T3939 146-149 NN denotes PCR
T3940 150-153 CC denotes and
T3941 154-168 NN denotes RACE-APO3Gnest
T3942 169-170 -LRB- denotes (
T3943 170-195 NN denotes 5′-GAATACACCTGGCCTCGAA-3′
T3944 195-196 -RRB- denotes )
T3945 197-200 IN denotes for
T3946 201-204 DT denotes the
T3947 205-211 JJ denotes nested
T3948 212-215 NN denotes PCR
R3192 T3920 T3918 arg1Of primers,The
R3193 T3920 T3919 arg1Of primers,following
R3194 T3920 T3921 arg1Of primers,were
R3195 T3920 T3922 arg2Of primers,used
R3196 T3922 T3921 arg2Of used,were
R3197 T3922 T3923 arg1Of used,:
R3198 T3922 T3924 arg1Of used,RACE-APO3G1
R3199 T3922 T3928 arg1Of used,for
R3200 T3922 T3945 arg1Of used,for
R3201 T3924 T3925 arg1Of RACE-APO3G1,(
R3202 T3926 T3925 arg2Of 5′-TATCCCTTGTACACTTTGT-3′,(
R3203 T3927 T3925 arg3Of ),(
R3204 T3930 T3929 arg1Of synthesis,cDNA
R3205 T3930 T3931 arg1Of synthesis,","
R3206 T3931 T3940 arg1Of ",",and
R3207 T3932 T3931 arg2Of RACE-APO3G2,","
R3208 T3932 T3933 arg1Of RACE-APO3G2,(
R3209 T3932 T3936 arg1Of RACE-APO3G2,for
R3210 T3934 T3933 arg2Of 5′-CATACTCCTGGTCACGAT-3′,(
R3211 T3935 T3933 arg3Of ),(
R3212 T3939 T3936 arg2Of PCR,for
R3213 T3939 T3937 arg1Of PCR,the
R3214 T3939 T3938 arg1Of PCR,first
R3215 T3940 T3928 arg2Of and,for
R3216 T3941 T3940 arg2Of RACE-APO3Gnest,and
R3217 T3941 T3942 arg1Of RACE-APO3Gnest,(
R3218 T3943 T3942 arg2Of 5′-GAATACACCTGGCCTCGAA-3′,(
R3219 T3944 T3942 arg3Of ),(
R3220 T3948 T3945 arg2Of PCR,for
R3221 T3948 T3946 arg1Of PCR,the
R3222 T3948 T3947 arg1Of PCR,nested

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4123 93-97 Protein denotes RACE
T4124 98-104 Protein denotes APO3G2