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PMC:1920263 / 10-321 JSONTXT

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test2

Id Subject Object Predicate Lexical cue Negation
T24 2-10 Regulation denotes regulate
T25 17-30 Transcription denotes transcription
T26 44-52 Protein denotes APOBEC3G
T27 69-77 Protein denotes APOBEC3G true
T28 79-82 Protein denotes A3G
T29 161-170 Gene_expression denotes expressed
R18 T25 T24 themeOf transcription,regulate
R19 T26 T25 themeOf APOBEC3G,transcription
R20 T27 T29 themeOf APOBEC3G,expressed
R21 T28 T27 equivalentTo A3G,APOBEC3G

GO-BP

Id Subject Object Predicate Lexical cue
T73 17-30 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T11409 17-30 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

UBERON-AE

Id Subject Object Predicate Lexical cue
T42 185-190 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T321 2-10 VB denotes regulate
T322 11-16 JJ denotes basal
T323 17-30 NN denotes transcription
T324 31-33 IN denotes of
T325 34-37 DT denotes the
T326 38-43 JJ denotes human
T327 44-52 NNP denotes APOBEC3G
T328 53-57 NN denotes gene
T329 69-77 NNP denotes APOBEC3G
T330 78-79 -LRB- denotes (
T331 79-82 NNP denotes A3G
T332 82-83 -RRB- denotes )
T333 83-84 , denotes ,
T334 85-86 DT denotes a
T335 87-93 NN denotes member
T336 94-96 IN denotes of
T337 97-100 DT denotes the
T338 101-109 RB denotes recently
T339 110-120 VBN denotes discovered
T340 121-127 NN denotes family
T341 128-130 IN denotes of
T342 131-136 JJ denotes human
T343 137-145 NN denotes cytidine
T344 146-156 NNS denotes deaminases
T345 156-157 , denotes ,
T346 158-160 VBZ denotes is
T347 161-170 VBN denotes expressed
T348 171-173 IN denotes in
T349 174-184 JJ denotes peripheral
T350 185-190 NN denotes blood
T351 191-202 NNS denotes lymphocytes
T352 203-206 CC denotes and
T353 207-210 VBZ denotes has
T354 211-215 VBN denotes been
T355 216-221 VBN denotes shown
T356 222-224 TO denotes to
T357 225-227 VB denotes be
T358 228-234 JJ denotes active
T359 235-242 IN denotes against
T360 243-248 NNP denotes HIV-1
T361 249-252 CC denotes and
T362 253-258 JJ denotes other
T363 259-271 NNS denotes retroviruses
T364 271-272 . denotes .
T365 273-275 TO denotes To
T366 276-280 VB denotes gain
T367 281-284 JJ denotes new
T368 285-293 NNS denotes insights
T369 294-298 IN denotes into
T370 299-302 DT denotes the
T11944 17-30 NN denotes transcription
R270 T322 T323 amod basal,transcription
R271 T323 T321 dobj transcription,regulate
R272 T324 T323 prep of,transcription
R273 T325 T328 det the,gene
R274 T326 T328 amod human,gene
R275 T327 T328 compound APOBEC3G,gene
R276 T328 T324 pobj gene,of
R277 T329 T328 appos APOBEC3G,gene
R278 T330 T331 punct (,A3G
R279 T331 T329 appos A3G,APOBEC3G
R280 T332 T329 punct ),APOBEC3G
R281 T333 T328 punct ",",gene
R282 T334 T335 det a,member
R283 T335 T328 appos member,gene
R284 T336 T335 prep of,member
R285 T337 T340 det the,family
R286 T338 T339 advmod recently,discovered
R287 T339 T340 amod discovered,family
R288 T340 T336 pobj family,of
R289 T341 T340 prep of,family
R290 T342 T344 amod human,deaminases
R291 T343 T344 compound cytidine,deaminases
R292 T344 T341 pobj deaminases,of
R293 T345 T347 punct ",",expressed
R294 T346 T347 auxpass is,expressed
R295 T347 T347 ROOT expressed,expressed
R296 T348 T347 prep in,expressed
R297 T349 T351 amod peripheral,lymphocytes
R298 T350 T351 compound blood,lymphocytes
R299 T351 T348 pobj lymphocytes,in
R300 T352 T347 cc and,expressed
R301 T353 T355 aux has,shown
R302 T354 T355 auxpass been,shown
R303 T355 T347 conj shown,expressed
R304 T356 T357 aux to,be
R305 T357 T355 xcomp be,shown
R306 T358 T357 acomp active,be
R307 T359 T358 prep against,active
R308 T360 T359 pobj HIV-1,against
R309 T361 T360 cc and,HIV-1
R310 T362 T363 amod other,retroviruses
R311 T363 T360 conj retroviruses,HIV-1
R312 T364 T347 punct .,expressed
R313 T365 T366 aux To,gain
R315 T367 T368 amod new,insights
R316 T368 T366 dobj insights,gain
R317 T369 T368 prep into,insights

sentences

Id Subject Object Predicate Lexical cue
T65 69-272 Sentence denotes APOBEC3G (A3G), a member of the recently discovered family of human cytidine deaminases, is expressed in peripheral blood lymphocytes and has been shown to be active against HIV-1 and other retroviruses.
T2 60-68 Sentence denotes Abstract
T3 69-272 Sentence denotes APOBEC3G (A3G), a member of the recently discovered family of human cytidine deaminases, is expressed in peripheral blood lymphocytes and has been shown to be active against HIV-1 and other retroviruses.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T79 2-10 VB denotes regulate
T80 11-16 JJ denotes basal
T81 17-30 NN denotes transcription
T82 31-33 IN denotes of
T83 34-37 DT denotes the
T84 38-43 JJ denotes human
T85 44-52 NN denotes APOBEC3G
T86 53-57 NN denotes gene
T87 69-77 NN denotes APOBEC3G
T88 78-79 -LRB- denotes (
T89 79-82 NN denotes A3G
T90 82-83 -RRB- denotes )
T91 83-84 -COMMA- denotes ,
T92 85-86 DT denotes a
T93 87-93 NN denotes member
T94 94-96 IN denotes of
T95 97-100 DT denotes the
T96 101-109 RB denotes recently
T97 110-120 VB denotes discovered
T98 121-127 NN denotes family
T99 128-130 IN denotes of
T100 131-136 JJ denotes human
T101 137-145 NN denotes cytidine
T102 146-156 NN denotes deaminases
T103 156-157 -COMMA- denotes ,
T104 158-160 VB denotes is
T105 161-170 VB denotes expressed
T106 171-173 IN denotes in
T107 174-184 JJ denotes peripheral
T108 185-190 NN denotes blood
T109 191-202 NN denotes lymphocytes
T110 203-206 CC denotes and
T111 207-210 VB denotes has
T112 211-215 VB denotes been
T113 216-221 VB denotes shown
T114 222-224 TO denotes to
T115 225-227 VB denotes be
T116 228-234 JJ denotes active
T117 235-242 IN denotes against
T118 243-248 NN denotes HIV-1
T119 249-252 CC denotes and
T120 253-258 JJ denotes other
T121 259-271 NN denotes retroviruses
T122 273-275 TO denotes To
T123 276-280 VB denotes gain
T124 281-284 JJ denotes new
T125 285-293 NN denotes insights
T126 294-298 IN denotes into
T127 299-302 DT denotes the
T11429 17-30 NN denotes transcription
R45 T81 T79 arg2Of transcription,regulate
R46 T81 T80 arg1Of transcription,basal
R47 T81 T82 arg1Of transcription,of
R48 T86 T82 arg2Of gene,of
R49 T86 T83 arg1Of gene,the
R50 T86 T84 arg1Of gene,human
R51 T86 T85 arg1Of gene,APOBEC3G
R52 T87 T88 arg1Of APOBEC3G,(
R53 T87 T91 arg1Of APOBEC3G,","
R54 T87 T104 arg1Of APOBEC3G,is
R55 T87 T105 arg2Of APOBEC3G,expressed
R56 T87 T111 arg1Of APOBEC3G,has
R57 T87 T112 arg1Of APOBEC3G,been
R58 T87 T113 arg2Of APOBEC3G,shown
R59 T87 T115 arg1Of APOBEC3G,be
R60 T87 T116 arg1Of APOBEC3G,active
R61 T89 T88 arg2Of A3G,(
R62 T90 T88 arg3Of ),(
R63 T93 T91 arg2Of member,","
R64 T93 T92 arg1Of member,a
R65 T93 T94 arg1Of member,of
R66 T97 T96 arg1Of discovered,recently
R67 T98 T94 arg2Of family,of
R68 T98 T95 arg1Of family,the
R69 T98 T97 arg1Of family,discovered
R70 T98 T99 arg1Of family,of
R71 T102 T99 arg2Of deaminases,of
R72 T102 T100 arg1Of deaminases,human
R73 T102 T101 arg1Of deaminases,cytidine
R74 T105 T104 arg2Of expressed,is
R75 T105 T106 arg1Of expressed,in
R76 T105 T110 arg1Of expressed,and
R77 T109 T106 arg2Of lymphocytes,in
R78 T109 T107 arg1Of lymphocytes,peripheral
R79 T109 T108 arg1Of lymphocytes,blood
R80 T110 T103 arg1Of and,","
R81 T113 T110 arg2Of shown,and
R82 T113 T111 arg2Of shown,has
R83 T113 T112 arg2Of shown,been
R84 T115 T113 arg3Of be,shown
R85 T115 T114 arg1Of be,to
R86 T116 T115 arg2Of active,be
R87 T116 T117 arg1Of active,against
R88 T118 T119 arg1Of HIV-1,and
R89 T119 T117 arg2Of and,against
R90 T121 T119 arg2Of retroviruses,and
R91 T121 T120 arg1Of retroviruses,other
R92 T123 T122 arg1Of gain,To
R93 T125 T123 arg2Of insights,gain
R94 T125 T124 arg1Of insights,new
R95 T125 T126 arg1Of insights,into

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T294 69-77 Antecedent denotes APOBEC3G

events-check-again

Id Subject Object Predicate Lexical cue
T659 2-10 Regulation denotes regulate
T660 2-10 Regulation denotes regulate
T661 17-30 Transcription denotes transcription
T662 44-52 Protein denotes APOBEC3G
T663 69-77 Protein denotes APOBEC3G
T664 79-82 Protein denotes A3G
T665 161-170 Gene_expression denotes expressed
R547 T661 T660 themeOf transcription,regulate
R548 T661 T659 themeOf transcription,regulate
R549 T662 T661 themeOf APOBEC3G,transcription
R551 T663 T665 themeOf APOBEC3G,expressed
R552 T664 T663 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T680 38-57 Protein denotes human APOBEC3G gene
T681 17-30 Transcription denotes transcription
T682 2-10 Regulation denotes regulate
T683 2-10 Regulation denotes regulate
T684 69-77 Protein denotes APOBEC3G
T685 79-82 Protein denotes A3G
T686 121-156 Protein denotes family of human cytidine deaminases
T687 161-170 Gene_expression denotes expressed
T688 161-170 Gene_expression denotes expressed
R562 T680 T681 themeOf human APOBEC3G gene,transcription
R563 T681 T682 themeOf transcription,regulate
R564 T681 T683 themeOf transcription,regulate
R565 T684 T687 themeOf APOBEC3G,expressed
R566 T685 T688 themeOf A3G,expressed

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T45 2-10 Regulation denotes regulate
T46 2-10 Regulation denotes regulate
T47 17-30 Transcription denotes transcription
T48 44-52 Protein denotes APOBEC3G
T49 69-77 Protein denotes APOBEC3G
T50 79-82 Protein denotes A3G
T51 161-170 Gene_expression denotes expressed
R29 T47 T46 themeOf transcription,regulate
R30 T47 T45 themeOf transcription,regulate
R31 T48 T47 themeOf APOBEC3G,transcription
R33 T49 T51 themeOf APOBEC3G,expressed
R34 T50 T49 equivalentTo A3G,APOBEC3G

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T297 44-52 Q9HC16 denotes APOBEC3G
T298 69-77 Q9HC16 denotes APOBEC3G
T299 79-82 Q9HC16 denotes A3G