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PMC:1914394 / 54920-56761 JSONTXT

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Id Subject Object Predicate Lexical cue
T29766 550-552 , denotes ,
T29767 552-555 CC denotes and
T29768 556-558 NN denotes Rb
T29662 58-60 , denotes ,
T29663 60-68 VBN denotes embedded
T29664 69-71 IN denotes in
T29665 72-75 NN denotes OCT
T29666 76-77 -LRB- denotes (
T29667 77-86 NNP denotes TissueTek
T29649 0-8 NNS denotes Eyeballs
T29650 14-19 VBN denotes fixed
T29651 9-13 VBD denotes were
T29652 20-22 IN denotes in
T29653 23-24 CD denotes 4
T29654 24-25 NN denotes %
T29655 26-42 NN denotes paraformaldehyde
T29656 43-46 IN denotes for
T29657 47-48 CD denotes 1
T29658 49-50 NN denotes h
T29659 51-53 IN denotes at
T29660 54-55 CD denotes 4
T29661 56-58 NN denotes °C
T29668 87-91 CD denotes 4583
T29669 91-93 , denotes ,
T29670 93-99 NNP denotes Sakura
T29671 99-101 , denotes ,
T29672 101-124 NN denotes http://www.sakuraeu.com
T29673 124-125 -RRB- denotes )
T29674 125-127 , denotes ,
T29675 127-133 VBN denotes frozen
T29676 134-136 IN denotes on
T29677 137-140 JJ denotes dry
T29678 141-144 NN denotes ice
T29679 144-146 , denotes ,
T29680 146-149 CC denotes and
T29681 150-153 VBN denotes cut
T29682 154-158 IN denotes into
T29683 159-161 CD denotes 12
T29684 162-164 NN denotes μm
T29685 161-162 HYPH denotes -
T29686 165-173 NNS denotes sections
T29687 174-176 IN denotes on
T29688 177-187 NNP denotes Superfrost
T29689 193-199 NNS denotes slides
T29690 188-192 CC denotes plus
T29691 200-201 -LRB- denotes (
T29692 201-204 NN denotes VWR
T29693 204-206 , denotes ,
T29694 206-224 NN denotes http://www.vwr.com
T29695 224-225 -RRB- denotes )
T29696 225-226 . denotes .
T29697 226-334 sentence denotes For S-phase analysis, BrdU (100 μg/g of body weight) was injected intraperitoneally 2 h prior to sacrifice.
T29698 227-230 IN denotes For
T29699 284-292 VBN denotes injected
T29700 231-232 NN denotes S
T29701 233-238 NN denotes phase
T29702 232-233 HYPH denotes -
T29703 239-247 NN denotes analysis
T29704 247-249 , denotes ,
T29705 249-253 NN denotes BrdU
T29706 254-255 -LRB- denotes (
T29707 255-258 CD denotes 100
T29708 259-261 NN denotes μg
T29709 261-262 SYM denotes /
T29710 262-263 NN denotes g
T29711 264-266 IN denotes of
T29712 267-271 NN denotes body
T29713 272-278 NN denotes weight
T29714 278-279 -RRB- denotes )
T29715 280-283 VBD denotes was
T29716 293-310 RB denotes intraperitoneally
T29717 311-312 CD denotes 2
T29718 313-314 NN denotes h
T29719 321-323 IN denotes to
T29720 315-320 JJ denotes prior
T29721 324-333 NN denotes sacrifice
T29722 333-334 . denotes .
T29723 334-486 sentence denotes BrdU+ cells were detected using a biotin-conjugated sheep polyclonal antibody (1:500, Maine Biotechnology Services, http://www.mainebiotechnology.com).
T29724 335-339 NN denotes BrdU
T29725 341-346 NNS denotes cells
T29726 339-340 SYM denotes +
T29727 352-360 VBN denotes detected
T29728 347-351 VBD denotes were
T29729 361-366 VBG denotes using
T29730 367-368 DT denotes a
T29731 404-412 NN denotes antibody
T29732 369-375 NN denotes biotin
T29733 376-386 VBN denotes conjugated
T29734 375-376 HYPH denotes -
T29735 387-392 NN denotes sheep
T29736 393-403 JJ denotes polyclonal
T29737 413-414 -LRB- denotes (
T29738 441-449 NNPS denotes Services
T29739 414-415 CD denotes 1
T29740 415-416 SYM denotes :
T29741 416-419 CD denotes 500
T29742 419-421 , denotes ,
T29743 421-426 NNP denotes Maine
T29744 427-440 NNP denotes Biotechnology
T29745 449-451 , denotes ,
T29746 451-484 NN denotes http://www.mainebiotechnology.com
T29747 484-485 -RRB- denotes )
T29748 485-486 . denotes .
T29749 486-534 sentence denotes All other antibodies are described in Table S1.
T29750 487-490 DT denotes All
T29751 497-507 NNS denotes antibodies
T29752 491-496 JJ denotes other
T29753 512-521 VBN denotes described
T29754 508-511 VBP denotes are
T29755 522-524 IN denotes in
T29756 525-530 NN denotes Table
T29757 531-533 NN denotes S1
T29758 533-534 . denotes .
T29759 534-705 sentence denotes For E2f3, Mki67, and Rb staining, antigen retrieval was performed by boiling sections in citric acid solution for 15 min according to Ino [50], except on frozen sections.
T29760 535-538 IN denotes For
T29761 591-600 VBN denotes performed
T29762 539-543 NN denotes E2f3
T29763 559-567 NN denotes staining
T29764 543-545 , denotes ,
T29765 545-550 NN denotes Mki67
T29769 567-569 , denotes ,
T29770 569-576 NN denotes antigen
T29771 577-586 NN denotes retrieval
T29772 587-590 VBD denotes was
T29773 601-603 IN denotes by
T29774 604-611 VBG denotes boiling
T29775 612-620 NNS denotes sections
T29776 621-623 IN denotes in
T29777 624-630 JJ denotes citric
T29778 631-635 NN denotes acid
T29779 636-644 NN denotes solution
T29780 645-648 IN denotes for
T29781 649-651 CD denotes 15
T29782 652-655 NN denotes min
T29783 656-665 VBG denotes according
T29784 666-668 IN denotes to
T29785 669-672 NNP denotes Ino
T29786 673-674 -LRB- denotes [
T29787 674-676 CD denotes 50
T29788 676-677 -RRB- denotes ]
T29789 677-679 , denotes ,
T29790 679-685 IN denotes except
T29791 686-688 IN denotes on
T29792 689-695 VBN denotes frozen
T29793 696-704 NNS denotes sections
T29794 704-705 . denotes .
T29795 705-744 sentence denotes TUNEL was performed as described [13].
T29796 706-711 NN denotes TUNEL
T29797 716-725 VBN denotes performed
T29798 712-715 VBD denotes was
T29799 726-728 IN denotes as
T29800 729-738 VBN denotes described
T29801 739-740 -LRB- denotes [
T29802 740-742 CD denotes 13
T29803 742-743 -RRB- denotes ]
T29804 743-744 . denotes .
T29805 744-1015 sentence denotes Briefly, sections were incubated for 1 h at 37 °C with 75 μl of mixture solution consisting of 0.5 μl of terminal deoxynucleotide transferase, 1 μl of biotin-16-dUTP, 7.5 μl of CoCl2, 15 μl of 5× terminal deoxynucleotide transferase buffer, and 51 μl of distilled water.
T29806 745-752 RB denotes Briefly
T29807 768-777 VBN denotes incubated
T29808 752-754 , denotes ,
T29809 754-762 NNS denotes sections
T29810 763-767 VBD denotes were
T29811 778-781 IN denotes for
T29812 782-783 CD denotes 1
T29813 784-785 NN denotes h
T29814 786-788 IN denotes at
T29815 789-791 CD denotes 37
T29816 792-794 NN denotes °C
T29817 795-799 IN denotes with
T29818 800-802 CD denotes 75
T29819 803-805 NN denotes μl
T29820 806-808 IN denotes of
T29821 809-816 NN denotes mixture
T29822 817-825 NN denotes solution
T29823 826-836 VBG denotes consisting
T29824 837-839 IN denotes of
T29825 840-843 CD denotes 0.5
T29826 844-846 NN denotes μl
T29827 847-849 IN denotes of
T29828 850-858 JJ denotes terminal
T29829 875-886 NN denotes transferase
T29830 859-874 NN denotes deoxynucleotide
T29831 886-888 , denotes ,
T29832 888-889 CD denotes 1
T29833 890-892 NN denotes μl
T29834 893-895 IN denotes of
T29835 896-902 NN denotes biotin
T29836 906-910 NN denotes dUTP
T29837 902-903 HYPH denotes -
T29838 903-905 CD denotes 16
T29839 905-906 HYPH denotes -
T29840 910-912 , denotes ,
T29841 912-915 CD denotes 7.5
T29842 916-918 NN denotes μl
T29843 919-921 IN denotes of
T29844 922-927 NN denotes CoCl2
T29845 927-929 , denotes ,
T29846 929-931 CD denotes 15
T29847 932-934 NN denotes μl
T29848 935-937 IN denotes of
T29849 938-939 CD denotes 5
T29850 978-984 NN denotes buffer
T29851 939-940 SYM denotes ×
T29852 941-949 JJ denotes terminal
T29853 966-977 NN denotes transferase
T29854 950-965 NN denotes deoxynucleotide
T29855 984-986 , denotes ,
T29856 986-989 CC denotes and
T29857 990-992 CD denotes 51
T29858 993-995 NN denotes μl
T29859 996-998 IN denotes of
T29860 999-1008 VBN denotes distilled
T29861 1009-1014 NN denotes water
T29862 1014-1015 . denotes .
T29863 1015-1205 sentence denotes After three washes in 4× SSC buffer, sections were incubated with Alexa 488– or Alexa 568−streptavidin (1:1,000; Molecular Probes, http://probes.invitrogen.com) for 1 h at room temperature.
T29864 1016-1021 IN denotes After
T29865 1067-1076 VBN denotes incubated
T29866 1022-1027 CD denotes three
T29867 1028-1034 NNS denotes washes
T29868 1035-1037 IN denotes in
T29869 1038-1039 CD denotes 4
T29870 1045-1051 NN denotes buffer
T29871 1039-1040 SYM denotes ×
T29872 1041-1044 NN denotes SSC
T29873 1051-1053 , denotes ,
T29874 1053-1061 NNS denotes sections
T29875 1062-1066 VBD denotes were
T29876 1077-1081 IN denotes with
T29877 1082-1087 NNP denotes Alexa
T29878 1106-1118 NN denotes streptavidin
T29879 1088-1091 CD denotes 488
T29880 1091-1092 HYPH denotes –
T29881 1093-1095 CC denotes or
T29882 1096-1101 NNP denotes Alexa
T29883 1102-1105 CD denotes 568
T29884 1105-1106 HYPH denotes −
T29885 1119-1120 -LRB- denotes (
T29886 1139-1145 NNP denotes Probes
T29887 1120-1121 CD denotes 1
T29888 1121-1122 SYM denotes :
T29889 1122-1127 CD denotes 1,000
T29890 1127-1128 : denotes ;
T29891 1129-1138 NNP denotes Molecular
T29892 1145-1147 , denotes ,
T29893 1147-1175 NN denotes http://probes.invitrogen.com
T29894 1175-1176 -RRB- denotes )
T29895 1177-1180 IN denotes for
T29896 1181-1182 CD denotes 1
T29897 1183-1184 NN denotes h
T29898 1185-1187 IN denotes at
T29899 1188-1192 NN denotes room
T29900 1193-1204 NN denotes temperature
T29901 1204-1205 . denotes .
T29902 1205-1459 sentence denotes Primary antibodies or labelled cells were visualized using donkey anti-mouse Alexa 488 or Alexa 568, donkey anti-rabbit Alexa 488 or Alexa 568, donkey anti-goat Alexa 488 or Alexa 568, and streptavidin Alexa 488 or Alexa 568 (1:1,000; Molecular Probes).
T29903 1206-1213 JJ denotes Primary
T29904 1214-1224 NNS denotes antibodies
T29905 1248-1258 VBN denotes visualized
T29906 1225-1227 CC denotes or
T29907 1228-1236 VBN denotes labelled
T29908 1237-1242 NNS denotes cells
T29909 1243-1247 VBD denotes were
T29910 1259-1264 VBG denotes using
T29911 1265-1271 NN denotes donkey
T29912 1283-1288 NNP denotes Alexa
T29913 1272-1282 JJ denotes anti-mouse
T29914 1289-1292 CD denotes 488
T29915 1293-1295 CC denotes or
T29916 1296-1301 NNP denotes Alexa
T29917 1302-1305 CD denotes 568
T29918 1305-1307 , denotes ,
T29919 1307-1313 NN denotes donkey
T29920 1326-1331 NNP denotes Alexa
T29921 1314-1325 JJ denotes anti-rabbit
T29922 1332-1335 CD denotes 488
T29923 1336-1338 CC denotes or
T29924 1339-1344 NNP denotes Alexa
T29925 1345-1348 CD denotes 568
T29926 1348-1350 , denotes ,
T29927 1350-1356 NN denotes donkey
T29928 1367-1372 NNP denotes Alexa
T29929 1357-1366 JJ denotes anti-goat
T29930 1373-1376 CD denotes 488
T29931 1377-1379 CC denotes or
T29932 1380-1385 NNP denotes Alexa
T29933 1386-1389 CD denotes 568
T29934 1389-1391 , denotes ,
T29935 1391-1394 CC denotes and
T29936 1395-1407 NN denotes streptavidin
T29937 1408-1413 NNP denotes Alexa
T29938 1414-1417 CD denotes 488
T29939 1418-1420 CC denotes or
T29940 1421-1426 NNP denotes Alexa
T29941 1427-1430 CD denotes 568
T29942 1431-1432 -LRB- denotes (
T29943 1451-1457 NNP denotes Probes
T29944 1432-1433 CD denotes 1
T29945 1433-1434 SYM denotes :
T29946 1434-1439 CD denotes 1,000
T29947 1439-1440 : denotes ;
T29948 1441-1450 NNP denotes Molecular
T29949 1457-1458 -RRB- denotes )
T29950 1458-1459 . denotes .
T29951 1459-1564 sentence denotes Nuclei were counter-stained with 4,6-diamidino-2-phenyindole (DAPI; Sigma, http://www.sigmaaldrich.com).
T29952 1460-1466 NNS denotes Nuclei
T29953 1480-1487 VBN denotes stained
T29954 1467-1471 VBD denotes were
T29955 1472-1479 RB denotes counter
T29956 1479-1480 HYPH denotes -
T29957 1488-1492 IN denotes with
T29958 1493-1494 CD denotes 4
T29959 1497-1506 NN denotes diamidino
T29960 1494-1495 , denotes ,
T29961 1495-1496 CD denotes 6
T29962 1496-1497 HYPH denotes -
T29963 1509-1520 NN denotes phenyindole
T29964 1506-1507 HYPH denotes -
T29965 1507-1508 CD denotes 2
T29966 1508-1509 HYPH denotes -
T29967 1521-1522 -LRB- denotes (
T29968 1522-1526 NN denotes DAPI
T29969 1526-1527 : denotes ;
T29970 1528-1533 NN denotes Sigma
T29971 1533-1535 , denotes ,
T29972 1535-1562 NN denotes http://www.sigmaaldrich.com
T29973 1562-1563 -RRB- denotes )
T29974 1563-1564 . denotes .
T29975 1564-1734 sentence denotes Labelled cells were visualized using a Zeiss (http://www.zeiss.com) Axioplan-2 microscope with Plan Neofluar objectives and images captured with a Zeiss AxionCam camera.
T29976 1565-1573 VBN denotes Labelled
T29977 1574-1579 NNS denotes cells
T29978 1585-1595 VBN denotes visualized
T29979 1580-1584 VBD denotes were
T29980 1596-1601 VBG denotes using
T29981 1602-1603 DT denotes a
T29982 1644-1654 NN denotes microscope
T29983 1604-1609 NNP denotes Zeiss
T29984 1610-1611 -LRB- denotes (
T29985 1611-1631 NN denotes http://www.zeiss.com
T29986 1631-1632 -RRB- denotes )
T29987 1633-1641 NN denotes Axioplan
T29988 1641-1642 HYPH denotes -
T29989 1642-1643 CD denotes 2
T29990 1655-1659 IN denotes with
T29991 1660-1664 NNP denotes Plan
T29992 1665-1673 NNP denotes Neofluar
T29993 1674-1684 NNS denotes objectives
T29994 1685-1688 CC denotes and
T29995 1689-1695 NNS denotes images
T29996 1696-1704 VBN denotes captured
T29997 1705-1709 IN denotes with
T29998 1710-1711 DT denotes a
T29999 1727-1733 NN denotes camera
T30000 1712-1717 NNP denotes Zeiss
T30001 1718-1726 NNP denotes AxionCam
T30002 1733-1734 . denotes .
T30003 1734-1841 sentence denotes For double-labelled samples, confocal images were obtained with a Zeiss LSM 5.0 laser scanning microscope.
T30004 1735-1738 IN denotes For
T30005 1785-1793 VBN denotes obtained
T30006 1739-1745 JJ denotes double
T30007 1746-1754 VBN denotes labelled
T30008 1745-1746 HYPH denotes -
T30009 1755-1762 NNS denotes samples
T30010 1762-1764 , denotes ,
T30011 1764-1772 JJ denotes confocal
T30012 1773-1779 NNS denotes images
T30013 1780-1784 VBD denotes were
T30014 1794-1798 IN denotes with
T30015 1799-1800 DT denotes a
T30016 1830-1840 NN denotes microscope
T30017 1801-1806 NNP denotes Zeiss
T30018 1807-1810 NNP denotes LSM
T30019 1811-1814 CD denotes 5.0
T30020 1815-1820 NN denotes laser
T30021 1821-1829 NN denotes scanning
T30022 1840-1841 . denotes .
R8634 T29649 T29650 nsubjpass Eyeballs,fixed
R8635 T29651 T29650 auxpass were,fixed
R8636 T29652 T29650 prep in,fixed
R8637 T29653 T29654 nummod 4,%
R8638 T29654 T29655 compound %,paraformaldehyde
R8639 T29655 T29652 pobj paraformaldehyde,in
R8640 T29656 T29650 prep for,fixed
R8641 T29657 T29658 nummod 1,h
R8642 T29658 T29656 pobj h,for
R8643 T29659 T29650 prep at,fixed
R8644 T29660 T29661 nummod 4,°C
R8645 T29661 T29659 pobj °C,at
R8646 T29662 T29650 punct ", ",fixed
R8647 T29663 T29650 conj embedded,fixed
R8648 T29664 T29663 prep in,embedded
R8649 T29665 T29664 pobj OCT,in
R8650 T29666 T29665 punct (,OCT
R8651 T29667 T29665 appos TissueTek,OCT
R8652 T29668 T29667 nummod 4583,TissueTek
R8653 T29669 T29670 punct ", ",Sakura
R8654 T29670 T29665 parataxis Sakura,OCT
R8655 T29671 T29670 punct ", ",Sakura
R8656 T29672 T29670 npadvmod http://www.sakuraeu.com,Sakura
R8657 T29673 T29670 punct ),Sakura
R8658 T29674 T29663 punct ", ",embedded
R8659 T29675 T29663 conj frozen,embedded
R8660 T29676 T29675 prep on,frozen
R8661 T29677 T29678 amod dry,ice
R8662 T29678 T29676 pobj ice,on
R8663 T29679 T29675 punct ", ",frozen
R8664 T29680 T29675 cc and,frozen
R8665 T29681 T29675 conj cut,frozen
R8666 T29682 T29681 prep into,cut
R8667 T29683 T29684 nummod 12,μm
R8668 T29684 T29686 compound μm,sections
R8669 T29685 T29684 punct -,μm
R8670 T29686 T29682 pobj sections,into
R8671 T29687 T29686 prep on,sections
R8672 T29688 T29689 nmod Superfrost,slides
R8673 T29689 T29687 pobj slides,on
R8674 T29690 T29688 cc plus,Superfrost
R8675 T29691 T29692 punct (,VWR
R8676 T29692 T29689 parataxis VWR,slides
R8677 T29693 T29692 punct ", ",VWR
R8678 T29694 T29692 npadvmod http://www.vwr.com,VWR
R8679 T29695 T29692 punct ),VWR
R8680 T29696 T29650 punct .,fixed
R8681 T29698 T29699 prep For,injected
R8682 T29700 T29701 compound S,phase
R8683 T29701 T29703 compound phase,analysis
R8684 T29702 T29701 punct -,phase
R8685 T29703 T29698 pobj analysis,For
R8686 T29704 T29699 punct ", ",injected
R8687 T29705 T29699 nsubjpass BrdU,injected
R8688 T29706 T29705 punct (,BrdU
R8689 T29707 T29708 nummod 100,μg
R8690 T29708 T29705 npadvmod μg,BrdU
R8691 T29709 T29710 punct /,g
R8692 T29710 T29708 prep g,μg
R8693 T29711 T29710 prep of,g
R8694 T29712 T29713 compound body,weight
R8695 T29713 T29711 pobj weight,of
R8696 T29714 T29699 punct ),injected
R8697 T29715 T29699 auxpass was,injected
R8698 T29716 T29699 advmod intraperitoneally,injected
R8699 T29717 T29718 nummod 2,h
R8700 T29718 T29719 npadvmod h,to
R8701 T29719 T29699 prep to,injected
R8702 T29720 T29719 amod prior,to
R8703 T29721 T29719 pobj sacrifice,to
R8704 T29722 T29699 punct .,injected
R8705 T29724 T29725 nmod BrdU,cells
R8706 T29725 T29727 nsubjpass cells,detected
R8707 T29726 T29724 punct +,BrdU
R8708 T29728 T29727 auxpass were,detected
R8709 T29729 T29727 advcl using,detected
R8710 T29730 T29731 det a,antibody
R8711 T29731 T29729 dobj antibody,using
R8712 T29732 T29733 npadvmod biotin,conjugated
R8713 T29733 T29731 amod conjugated,antibody
R8714 T29734 T29733 punct -,conjugated
R8715 T29735 T29731 nmod sheep,antibody
R8716 T29736 T29731 amod polyclonal,antibody
R8717 T29737 T29738 punct (,Services
R8718 T29738 T29729 parataxis Services,using
R8719 T29739 T29738 dep 1,Services
R8720 T29740 T29741 punct :,500
R8721 T29741 T29739 prep 500,1
R8722 T29742 T29738 punct ", ",Services
R8723 T29743 T29738 compound Maine,Services
R8724 T29744 T29738 compound Biotechnology,Services
R8725 T29745 T29738 punct ", ",Services
R8726 T29746 T29738 npadvmod http://www.mainebiotechnology.com,Services
R8727 T29747 T29738 punct ),Services
R8728 T29748 T29727 punct .,detected
R8729 T29750 T29751 det All,antibodies
R8730 T29751 T29753 nsubjpass antibodies,described
R8731 T29752 T29751 amod other,antibodies
R8732 T29754 T29753 auxpass are,described
R8733 T29755 T29753 prep in,described
R8734 T29756 T29757 compound Table,S1
R8735 T29757 T29755 pobj S1,in
R8736 T29758 T29753 punct .,described
R8737 T29760 T29761 prep For,performed
R8738 T29762 T29763 nmod E2f3,staining
R8739 T29763 T29760 pobj staining,For
R8740 T29764 T29762 punct ", ",E2f3
R8741 T29765 T29762 conj Mki67,E2f3
R8742 T29766 T29765 punct ", ",Mki67
R8743 T29767 T29765 cc and,Mki67
R8744 T29768 T29765 conj Rb,Mki67
R8745 T29769 T29761 punct ", ",performed
R8746 T29770 T29771 compound antigen,retrieval
R8747 T29771 T29761 nsubjpass retrieval,performed
R8748 T29772 T29761 auxpass was,performed
R8749 T29773 T29761 prep by,performed
R8750 T29774 T29773 pcomp boiling,by
R8751 T29775 T29774 dobj sections,boiling
R8752 T29776 T29774 prep in,boiling
R8753 T29777 T29778 amod citric,acid
R8754 T29778 T29779 compound acid,solution
R8755 T29779 T29776 pobj solution,in
R8756 T29780 T29774 prep for,boiling
R8757 T29781 T29782 nummod 15,min
R8758 T29782 T29780 pobj min,for
R8759 T29783 T29774 prep according,boiling
R8760 T29784 T29783 prep to,according
R8761 T29785 T29784 pobj Ino,to
R8762 T29786 T29787 punct [,50
R8763 T29787 T29785 parataxis 50,Ino
R8764 T29788 T29787 punct ],50
R8765 T29789 T29774 punct ", ",boiling
R8766 T29790 T29774 prep except,boiling
R8767 T29791 T29790 prep on,except
R8768 T29792 T29793 amod frozen,sections
R8769 T29793 T29791 pobj sections,on
R8770 T29794 T29761 punct .,performed
R8771 T29796 T29797 nsubjpass TUNEL,performed
R8772 T29798 T29797 auxpass was,performed
R8773 T29799 T29800 mark as,described
R8774 T29800 T29797 advcl described,performed
R8775 T29801 T29802 punct [,13
R8776 T29802 T29800 parataxis 13,described
R8777 T29803 T29802 punct ],13
R8778 T29804 T29797 punct .,performed
R8779 T29806 T29807 advmod Briefly,incubated
R8780 T29808 T29807 punct ", ",incubated
R8781 T29809 T29807 nsubjpass sections,incubated
R8782 T29810 T29807 auxpass were,incubated
R8783 T29811 T29807 prep for,incubated
R8784 T29812 T29813 nummod 1,h
R8785 T29813 T29811 pobj h,for
R8786 T29814 T29807 prep at,incubated
R8787 T29815 T29816 nummod 37,°C
R8788 T29816 T29814 pobj °C,at
R8789 T29817 T29807 prep with,incubated
R8790 T29818 T29819 nummod 75,μl
R8791 T29819 T29817 pobj μl,with
R8792 T29820 T29819 prep of,μl
R8793 T29821 T29822 compound mixture,solution
R8794 T29822 T29820 pobj solution,of
R8795 T29823 T29819 acl consisting,μl
R8796 T29824 T29823 prep of,consisting
R8797 T29825 T29826 nummod 0.5,μl
R8798 T29826 T29824 pobj μl,of
R8799 T29827 T29826 prep of,μl
R8800 T29828 T29829 amod terminal,transferase
R8801 T29829 T29827 pobj transferase,of
R8802 T29830 T29829 compound deoxynucleotide,transferase
R8803 T29831 T29826 punct ", ",μl
R8804 T29832 T29833 nummod 1,μl
R8805 T29833 T29826 conj μl,μl
R8806 T29834 T29833 prep of,μl
R8807 T29835 T29836 nmod biotin,dUTP
R8808 T29836 T29834 pobj dUTP,of
R8809 T29837 T29836 punct -,dUTP
R8810 T29838 T29836 nummod 16,dUTP
R8811 T29839 T29836 punct -,dUTP
R8812 T29840 T29833 punct ", ",μl
R8813 T29841 T29842 nummod 7.5,μl
R8814 T29842 T29833 conj μl,μl
R8815 T29843 T29842 prep of,μl
R8816 T29844 T29843 pobj CoCl2,of
R8817 T29845 T29842 punct ", ",μl
R8818 T29846 T29847 nummod 15,μl
R8819 T29847 T29842 conj μl,μl
R8820 T29848 T29847 prep of,μl
R8821 T29849 T29850 nummod 5,buffer
R8822 T29850 T29848 pobj buffer,of
R8823 T29851 T29849 punct ×,5
R8824 T29852 T29853 amod terminal,transferase
R8825 T29853 T29850 compound transferase,buffer
R8826 T29854 T29853 compound deoxynucleotide,transferase
R8827 T29855 T29847 punct ", ",μl
R8828 T29856 T29847 cc and,μl
R8829 T29857 T29858 nummod 51,μl
R8830 T29858 T29847 conj μl,μl
R8831 T29859 T29858 prep of,μl
R8832 T29860 T29861 amod distilled,water
R8833 T29861 T29859 pobj water,of
R8834 T29862 T29807 punct .,incubated
R8835 T29864 T29865 prep After,incubated
R8836 T29866 T29867 nummod three,washes
R8837 T29867 T29864 pobj washes,After
R8838 T29868 T29867 prep in,washes
R8839 T29869 T29870 nummod 4,buffer
R8840 T29870 T29868 pobj buffer,in
R8841 T29871 T29869 punct ×,4
R8842 T29872 T29870 compound SSC,buffer
R8843 T29873 T29865 punct ", ",incubated
R8844 T29874 T29865 nsubjpass sections,incubated
R8845 T29875 T29865 auxpass were,incubated
R8846 T29876 T29865 prep with,incubated
R8847 T29877 T29878 nmod Alexa,streptavidin
R8848 T29878 T29876 pobj streptavidin,with
R8849 T29879 T29877 nummod 488,Alexa
R8850 T29880 T29877 punct –,Alexa
R8851 T29881 T29877 cc or,Alexa
R8852 T29882 T29877 conj Alexa,Alexa
R8853 T29883 T29882 nummod 568,Alexa
R8854 T29884 T29878 punct −,streptavidin
R8855 T29885 T29886 punct (,Probes
R8856 T29886 T29878 parataxis Probes,streptavidin
R8857 T29887 T29886 dep 1,Probes
R8858 T29888 T29889 punct :,"1,000"
R8859 T29889 T29887 prep "1,000",1
R8860 T29890 T29886 punct ;,Probes
R8861 T29891 T29886 compound Molecular,Probes
R8862 T29892 T29886 punct ", ",Probes
R8863 T29893 T29886 npadvmod http://probes.invitrogen.com,Probes
R8864 T29894 T29886 punct ),Probes
R8865 T29895 T29865 prep for,incubated
R8866 T29896 T29897 nummod 1,h
R8867 T29897 T29895 pobj h,for
R8868 T29898 T29865 prep at,incubated
R8869 T29899 T29900 compound room,temperature
R8870 T29900 T29898 pobj temperature,at
R8871 T29901 T29865 punct .,incubated
R8872 T29903 T29904 amod Primary,antibodies
R8873 T29904 T29905 nsubjpass antibodies,visualized
R8874 T29906 T29904 cc or,antibodies
R8875 T29907 T29908 amod labelled,cells
R8876 T29908 T29904 conj cells,antibodies
R8877 T29909 T29905 auxpass were,visualized
R8878 T29910 T29905 advcl using,visualized
R8879 T29911 T29912 nmod donkey,Alexa
R8880 T29912 T29910 dobj Alexa,using
R8881 T29913 T29912 amod anti-mouse,Alexa
R8882 T29914 T29912 nummod 488,Alexa
R8883 T29915 T29912 cc or,Alexa
R8884 T29916 T29912 conj Alexa,Alexa
R8885 T29917 T29916 nummod 568,Alexa
R8886 T29918 T29912 punct ", ",Alexa
R8887 T29919 T29920 nmod donkey,Alexa
R8888 T29920 T29912 conj Alexa,Alexa
R8889 T29921 T29920 amod anti-rabbit,Alexa
R8890 T29922 T29920 nummod 488,Alexa
R8891 T29923 T29920 cc or,Alexa
R8892 T29924 T29920 conj Alexa,Alexa
R8893 T29925 T29924 nummod 568,Alexa
R8894 T29926 T29920 punct ", ",Alexa
R8895 T29927 T29928 nmod donkey,Alexa
R8896 T29928 T29920 conj Alexa,Alexa
R8897 T29929 T29928 amod anti-goat,Alexa
R8898 T29930 T29928 nummod 488,Alexa
R8899 T29931 T29928 cc or,Alexa
R8900 T29932 T29928 conj Alexa,Alexa
R8901 T29933 T29932 nummod 568,Alexa
R8902 T29934 T29928 punct ", ",Alexa
R8903 T29935 T29928 cc and,Alexa
R8904 T29936 T29937 compound streptavidin,Alexa
R8905 T29937 T29928 conj Alexa,Alexa
R8906 T29938 T29937 nummod 488,Alexa
R8907 T29939 T29937 cc or,Alexa
R8908 T29940 T29937 conj Alexa,Alexa
R8909 T29941 T29940 nummod 568,Alexa
R8910 T29942 T29943 punct (,Probes
R8911 T29943 T29910 parataxis Probes,using
R8912 T29944 T29943 dep 1,Probes
R8913 T29945 T29946 punct :,"1,000"
R8914 T29946 T29944 prep "1,000",1
R8915 T29947 T29943 punct ;,Probes
R8916 T29948 T29943 compound Molecular,Probes
R8917 T29949 T29943 punct ),Probes
R8918 T29950 T29905 punct .,visualized
R8919 T29952 T29953 nsubjpass Nuclei,stained
R8920 T29954 T29953 auxpass were,stained
R8921 T29955 T29953 advmod counter,stained
R8922 T29956 T29953 punct -,stained
R8923 T29957 T29953 prep with,stained
R8924 T29958 T29959 nummod 4,diamidino
R8925 T29959 T29963 nmod diamidino,phenyindole
R8926 T29960 T29959 punct ",",diamidino
R8927 T29961 T29959 nummod 6,diamidino
R8928 T29962 T29959 punct -,diamidino
R8929 T29963 T29957 pobj phenyindole,with
R8930 T29964 T29963 punct -,phenyindole
R8931 T29965 T29963 nummod 2,phenyindole
R8932 T29966 T29963 punct -,phenyindole
R8933 T29967 T29963 punct (,phenyindole
R8934 T29968 T29963 appos DAPI,phenyindole
R8935 T29969 T29970 punct ;,Sigma
R8936 T29970 T29963 parataxis Sigma,phenyindole
R8937 T29971 T29970 punct ", ",Sigma
R8938 T29972 T29970 npadvmod http://www.sigmaaldrich.com,Sigma
R8939 T29973 T29970 punct ),Sigma
R8940 T29974 T29953 punct .,stained
R8941 T29976 T29977 amod Labelled,cells
R8942 T29977 T29978 nsubjpass cells,visualized
R8943 T29979 T29978 auxpass were,visualized
R8944 T29980 T29978 advcl using,visualized
R8945 T29981 T29982 det a,microscope
R8946 T29982 T29980 dobj microscope,using
R8947 T29983 T29982 nmod Zeiss,microscope
R8948 T29984 T29983 punct (,Zeiss
R8949 T29985 T29983 appos http://www.zeiss.com,Zeiss
R8950 T29986 T29982 punct ),microscope
R8951 T29987 T29982 nmod Axioplan,microscope
R8952 T29988 T29987 punct -,Axioplan
R8953 T29989 T29987 nummod 2,Axioplan
R8954 T29990 T29982 prep with,microscope
R8955 T29991 T29992 compound Plan,Neofluar
R8956 T29992 T29993 compound Neofluar,objectives
R8957 T29993 T29990 pobj objectives,with
R8958 T29994 T29978 cc and,visualized
R8959 T29995 T29996 nsubj images,captured
R8960 T29996 T29978 conj captured,visualized
R8961 T29997 T29996 prep with,captured
R8962 T29998 T29999 det a,camera
R8963 T29999 T29997 pobj camera,with
R8964 T30000 T30001 compound Zeiss,AxionCam
R8965 T30001 T29999 compound AxionCam,camera
R8966 T30002 T29996 punct .,captured
R8967 T30004 T30005 prep For,obtained
R8968 T30006 T30007 amod double,labelled
R8969 T30007 T30009 amod labelled,samples
R8970 T30008 T30007 punct -,labelled
R8971 T30009 T30004 pobj samples,For
R8972 T30010 T30005 punct ", ",obtained
R8973 T30011 T30012 amod confocal,images
R8974 T30012 T30005 nsubjpass images,obtained
R8975 T30013 T30005 auxpass were,obtained
R8976 T30014 T30005 prep with,obtained
R8977 T30015 T30016 det a,microscope
R8978 T30016 T30014 pobj microscope,with
R8979 T30017 T30018 nmod Zeiss,LSM
R8980 T30018 T30016 nmod LSM,microscope
R8981 T30019 T30018 nummod 5.0,LSM
R8982 T30020 T30021 compound laser,scanning
R8983 T30021 T30016 compound scanning,microscope
R8984 T30022 T30005 punct .,obtained

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T29576 624-635 CHEBI:30769 denotes citric acid
T29577 636-644 CHEBI:75958 denotes solution
T29578 809-816 CHEBI:60004 denotes mixture
T29579 817-825 CHEBI:75958 denotes solution
T29558 0-8 UBERON:0010230 denotes Eyeballs
T29559 26-42 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T29560 231-238 GO:0051320 denotes S-phase
T29561 249-253 CHEBI:472552 denotes BrdU
T29562 267-271 UBERON_EXT:body denotes body
T29563 298-310 UBERON:0001179 denotes peritoneally
T29564 324-333 GO_EXT:killing denotes sacrifice
T29565 335-339 CHEBI:472552 denotes BrdU
T29566 341-346 CL_GO_EXT:cell denotes cells
T29567 369-375 CHEBI:15956 denotes biotin
T29568 369-386 MOP:0000093 denotes biotin-conjugated
T29569 387-392 NCBITaxon:9940 denotes sheep
T29570 404-412 GO:0042571 denotes antibody
T29571 497-507 GO:0042571 denotes antibodies
T29572 539-543 PR_EXT:000006854 denotes E2f3
T29573 545-550 PR_EXT:000010425 denotes Mki67
T29574 556-558 PR_EXT:000013773 denotes Rb
T29575 569-576 CHEBI_EXT:59132 denotes antigen
T29580 850-886 GO_PR_EXT:DNA_nucleotidylexotransferase denotes terminal deoxynucleotide transferase
T29581 859-874 CHEBI_SO_EXT:deoxyribonucleotide denotes deoxynucleotide
T29582 896-902 CHEBI:15956 denotes biotin
T29583 906-910 CHEBI_EXT:dUTP denotes dUTP
T29584 922-927 CHEBI:35696 denotes CoCl2
T29585 941-977 GO_PR_EXT:DNA_nucleotidylexotransferase denotes terminal deoxynucleotide transferase
T29586 950-965 CHEBI_SO_EXT:deoxyribonucleotide denotes deoxynucleotide
T29587 978-984 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T29588 1009-1014 CHEBI:15377 denotes water
T29589 1041-1044 CHEBI_EXT:saline_sodium_citrate denotes SSC
T29590 1045-1051 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T29591 1082-1091 CHEBI:52661 denotes Alexa 488
T29592 1096-1105 CHEBI:51766 denotes Alexa 568
T29593 1129-1138 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T29594 1139-1145 CHEBI_SO_EXT:molecular_probe denotes Probes
T29595 1214-1224 GO:0042571 denotes antibodies
T29596 1228-1236 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T29597 1237-1242 CL_GO_EXT:cell denotes cells
T29598 1265-1271 NCBITaxon:9793 denotes donkey
T29599 1277-1282 NCBITaxon:10088 denotes mouse
T29600 1283-1292 CHEBI:52661 denotes Alexa 488
T29601 1296-1305 CHEBI:51766 denotes Alexa 568
T29602 1307-1313 NCBITaxon:9793 denotes donkey
T29603 1319-1325 NCBITaxon:9986 denotes rabbit
T29604 1326-1335 CHEBI:52661 denotes Alexa 488
T29605 1339-1348 CHEBI:51766 denotes Alexa 568
T29606 1350-1356 NCBITaxon:9793 denotes donkey
T29607 1362-1366 NCBITaxon:9925 denotes goat
T29608 1367-1376 CHEBI:52661 denotes Alexa 488
T29609 1380-1389 CHEBI:51766 denotes Alexa 568
T29610 1408-1417 CHEBI:52661 denotes Alexa 488
T29611 1421-1430 CHEBI:51766 denotes Alexa 568
T29612 1441-1450 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T29613 1451-1457 CHEBI_SO_EXT:molecular_probe denotes Probes
T29614 1460-1466 GO:0005634 denotes Nuclei
T29615 1493-1520 CHEBI:51231 denotes 4,6-diamidino-2-phenyindole
T29616 1522-1526 CHEBI:51231 denotes DAPI
T29617 1565-1573 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes Labelled
T29618 1574-1579 CL_GO_EXT:cell denotes cells
T29619 1746-1754 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T29503 0-8 UBERON:0010230 denotes Eyeballs
T29504 231-238 GO:0051320 denotes S-phase
T29505 249-253 CHEBI:472552 denotes BrdU
T29506 298-310 UBERON:0001179 denotes peritoneally
T29507 335-339 CHEBI:472552 denotes BrdU
T29508 369-375 CHEBI:15956 denotes biotin
T29509 369-386 MOP:0000093 denotes biotin-conjugated
T29510 387-392 NCBITaxon:9940 denotes sheep
T29511 404-412 GO:0042571 denotes antibody
T29512 497-507 GO:0042571 denotes antibodies
T29513 539-543 PR:000006854 denotes E2f3
T29514 545-550 PR:000010425 denotes Mki67
T29515 556-558 PR:000013773 denotes Rb
T29516 569-576 CHEBI:59132 denotes antigen
T29517 624-635 CHEBI:30769 denotes citric acid
T29518 636-644 CHEBI:75958 denotes solution
T29519 809-816 CHEBI:60004 denotes mixture
T29520 817-825 CHEBI:75958 denotes solution
T29521 896-902 CHEBI:15956 denotes biotin
T29522 922-927 CHEBI:35696 denotes CoCl2
T29523 1009-1014 CHEBI:15377 denotes water
T29524 1082-1091 CHEBI:52661 denotes Alexa 488
T29525 1096-1105 CHEBI:51766 denotes Alexa 568
T29526 1214-1224 GO:0042571 denotes antibodies
T29527 1265-1271 NCBITaxon:9793 denotes donkey
T29528 1277-1282 NCBITaxon:10088 denotes mouse
T29529 1283-1292 CHEBI:52661 denotes Alexa 488
T29530 1296-1305 CHEBI:51766 denotes Alexa 568
T29531 1307-1313 NCBITaxon:9793 denotes donkey
T29532 1319-1325 NCBITaxon:9986 denotes rabbit
T29533 1326-1335 CHEBI:52661 denotes Alexa 488
T29534 1339-1348 CHEBI:51766 denotes Alexa 568
T29535 1350-1356 NCBITaxon:9793 denotes donkey
T29536 1362-1366 NCBITaxon:9925 denotes goat
T29537 1367-1376 CHEBI:52661 denotes Alexa 488
T29538 1380-1389 CHEBI:51766 denotes Alexa 568
T29539 1408-1417 CHEBI:52661 denotes Alexa 488
T29540 1421-1430 CHEBI:51766 denotes Alexa 568
T29541 1460-1466 GO:0005634 denotes Nuclei
T29542 1493-1520 CHEBI:51231 denotes 4,6-diamidino-2-phenyindole
T29543 1522-1526 CHEBI:51231 denotes DAPI

2_test

Id Subject Object Predicate Lexical cue
17608565-12871981-84869043 674-676 12871981 denotes 50
17608565-12093735-84869044 740-742 12093735 denotes 13
T15764 674-676 12871981 denotes 50
T25882 740-742 12093735 denotes 13