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PMC:1914394 / 34979-35773 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T36780 0-4 NN denotes E2f3
T36781 12-22 NN denotes Expression
T36782 5-8 CC denotes and
T36783 9-11 NN denotes Rb
T36784 23-25 IN denotes in
T36785 26-30 NNS denotes SACs
T36786 30-163 sentence denotes (A) Left panels: horizontal P0, P8, and P18 retinal sections of the indicated genotypes were stained for E2f3 (red) and DAPI (blue).
T36787 31-32 -LRB- denotes (
T36788 32-33 LS denotes A
T36789 124-131 VBN denotes stained
T36790 33-34 -RRB- denotes )
T36791 35-39 JJ denotes Left
T36792 40-46 NNS denotes panels
T36793 46-48 : denotes :
T36794 48-58 JJ denotes horizontal
T36795 83-91 NNS denotes sections
T36796 59-61 NN denotes P0
T36797 61-63 , denotes ,
T36798 63-65 NN denotes P8
T36799 65-67 , denotes ,
T36800 67-70 CC denotes and
T36801 71-74 NN denotes P18
T36802 75-82 JJ denotes retinal
T36803 92-94 IN denotes of
T36804 95-98 DT denotes the
T36805 109-118 NNS denotes genotypes
T36806 99-108 VBN denotes indicated
T36807 119-123 VBD denotes were
T36808 132-135 IN denotes for
T36809 136-140 NN denotes E2f3
T36810 141-142 -LRB- denotes (
T36811 142-145 JJ denotes red
T36812 145-146 -RRB- denotes )
T36813 147-150 CC denotes and
T36814 151-155 NN denotes DAPI
T36815 156-157 -LRB- denotes (
T36816 157-161 JJ denotes blue
T36817 161-162 -RRB- denotes )
T36818 162-163 . denotes .
T36819 163-255 sentence denotes The arrow indicates the junction between the E2f3 null peripheral and WT central P0 retina.
T36820 164-167 DT denotes The
T36821 168-173 NN denotes arrow
T36822 174-183 VBZ denotes indicates
T36823 184-187 DT denotes the
T36824 188-196 NN denotes junction
T36825 197-204 IN denotes between
T36826 205-208 DT denotes the
T36827 219-229 JJ denotes peripheral
T36828 209-213 NN denotes E2f3
T36829 214-218 JJ denotes null
T36830 230-233 CC denotes and
T36831 234-236 NN denotes WT
T36832 248-254 NN denotes retina
T36833 237-244 JJ denotes central
T36834 245-247 NN denotes P0
T36835 254-255 . denotes .
T36836 255-373 sentence denotes Note the absence of E2f3 protein in the peripheral E2f3 KO RPCs at P0 and in peripheral inner retinal neurons at P18.
T36837 256-260 VB denotes Note
T36838 261-264 DT denotes the
T36839 265-272 NN denotes absence
T36840 273-275 IN denotes of
T36841 276-280 NN denotes E2f3
T36842 281-288 NN denotes protein
T36843 289-291 IN denotes in
T36844 292-295 DT denotes the
T36845 315-319 NNS denotes RPCs
T36846 296-306 JJ denotes peripheral
T36847 307-311 NN denotes E2f3
T36848 312-314 NN denotes KO
T36849 320-322 IN denotes at
T36850 323-325 NN denotes P0
T36851 326-329 CC denotes and
T36852 330-332 IN denotes in
T36853 366-368 IN denotes at
T36854 333-343 JJ denotes peripheral
T36855 358-365 NNS denotes neurons
T36856 344-349 JJ denotes inner
T36857 350-357 JJ denotes retinal
T36858 369-372 NN denotes P18
T36859 372-373 . denotes .
T36860 373-481 sentence denotes Far right panel: P18 retinal sections of the indicated genotypes were stained for Rb (red) and DAPI (blue).
T36861 374-377 RB denotes Far
T36862 378-383 JJ denotes right
T36863 384-389 NN denotes panel
T36864 444-451 VBN denotes stained
T36865 389-391 : denotes :
T36866 391-394 NN denotes P18
T36867 403-411 NNS denotes sections
T36868 395-402 JJ denotes retinal
T36869 412-414 IN denotes of
T36870 415-418 DT denotes the
T36871 429-438 NNS denotes genotypes
T36872 419-428 VBN denotes indicated
T36873 439-443 VBD denotes were
T36874 452-455 IN denotes for
T36875 456-458 NN denotes Rb
T36876 459-460 -LRB- denotes (
T36877 460-463 JJ denotes red
T36878 463-464 -RRB- denotes )
T36879 465-468 CC denotes and
T36880 469-473 NN denotes DAPI
T36881 474-475 -LRB- denotes (
T36882 475-479 JJ denotes blue
T36883 479-480 -RRB- denotes )
T36884 480-481 . denotes .
T36885 481-559 sentence denotes Note the absence of Rb protein in the peripheral Rb KO inner retinal neurons.
T36886 482-486 VB denotes Note
T36887 487-490 DT denotes the
T36888 491-498 NN denotes absence
T36889 499-501 IN denotes of
T36890 502-504 NN denotes Rb
T36891 505-512 NN denotes protein
T36892 513-515 IN denotes in
T36893 516-519 DT denotes the
T36894 551-558 NNS denotes neurons
T36895 520-530 JJ denotes peripheral
T36896 531-533 NN denotes Rb
T36897 534-536 NN denotes KO
T36898 537-542 JJ denotes inner
T36899 543-550 JJ denotes retinal
T36900 558-559 . denotes .
T36901 559-680 sentence denotes (B) WT P18 retinal sections were stained for nuclei (DAPI, blue), E2f3 (red) or Rb (red), and Chat plus Slc18a3 (green).
T36902 560-561 -LRB- denotes (
T36903 561-562 LS denotes B
T36904 593-600 VBN denotes stained
T36905 562-563 -RRB- denotes )
T36906 564-566 NN denotes WT
T36907 579-587 NNS denotes sections
T36908 567-570 NN denotes P18
T36909 571-578 JJ denotes retinal
T36910 588-592 VBD denotes were
T36911 601-604 IN denotes for
T36912 605-611 NNS denotes nuclei
T36913 612-613 -LRB- denotes (
T36914 619-623 JJ denotes blue
T36915 613-617 NN denotes DAPI
T36916 617-619 , denotes ,
T36917 623-624 -RRB- denotes )
T36918 624-626 , denotes ,
T36919 626-630 NN denotes E2f3
T36920 631-632 -LRB- denotes (
T36921 632-635 JJ denotes red
T36922 635-636 -RRB- denotes )
T36923 637-639 CC denotes or
T36924 640-642 NN denotes Rb
T36925 643-644 -LRB- denotes (
T36926 644-647 JJ denotes red
T36927 647-648 -RRB- denotes )
T36928 648-650 , denotes ,
T36929 650-653 CC denotes and
T36930 654-658 NN denotes Chat
T36931 659-663 CC denotes plus
T36932 664-671 NN denotes Slc18a3
T36933 672-673 -LRB- denotes (
T36934 673-678 JJ denotes green
T36935 678-679 -RRB- denotes )
T36936 679-680 . denotes .
T36937 680-718 sentence denotes Arrows indicate double-labelled soma.
T36938 681-687 NNS denotes Arrows
T36939 688-696 VBP denotes indicate
T36940 697-703 JJ denotes double
T36941 704-712 VBN denotes labelled
T36942 703-704 HYPH denotes -
T36943 713-717 NNS denotes soma
T36944 717-718 . denotes .
T36945 718-772 sentence denotes Note that the IPL processes are also double-labelled.
T36946 719-723 VB denotes Note
T36947 724-728 IN denotes that
T36948 763-771 VBN denotes labelled
T36949 729-732 DT denotes the
T36950 737-746 NNS denotes processes
T36951 733-736 NN denotes IPL
T36952 747-750 VBP denotes are
T36953 751-755 RB denotes also
T36954 756-762 JJ denotes double
T36955 762-763 HYPH denotes -
T36956 771-772 . denotes .
T36957 772-794 sentence denotes Scale bars are 50 μm.
T36958 773-778 NN denotes Scale
T36959 779-783 NNS denotes bars
T36960 784-787 VBP denotes are
T36961 788-790 CD denotes 50
T36962 791-793 NN denotes μm
T36963 793-794 . denotes .
R11106 T36780 T36781 nmod E2f3,Expression
R11107 T36782 T36780 cc and,E2f3
R11108 T36783 T36780 conj Rb,E2f3
R11109 T36784 T36781 prep in,Expression
R11110 T36785 T36784 pobj SACs,in
R11111 T36787 T36788 punct (,A
R11112 T36788 T36789 meta A,stained
R11113 T36790 T36788 punct ),A
R11114 T36791 T36792 amod Left,panels
R11115 T36792 T36789 dep panels,stained
R11116 T36793 T36789 punct : ,stained
R11117 T36794 T36795 amod horizontal,sections
R11118 T36795 T36789 nsubjpass sections,stained
R11119 T36796 T36795 nmod P0,sections
R11120 T36797 T36796 punct ", ",P0
R11121 T36798 T36796 conj P8,P0
R11122 T36799 T36798 punct ", ",P8
R11123 T36800 T36798 cc and,P8
R11124 T36801 T36798 conj P18,P8
R11125 T36802 T36795 amod retinal,sections
R11126 T36803 T36795 prep of,sections
R11127 T36804 T36805 det the,genotypes
R11128 T36805 T36803 pobj genotypes,of
R11129 T36806 T36805 amod indicated,genotypes
R11130 T36807 T36789 auxpass were,stained
R11131 T36808 T36789 prep for,stained
R11132 T36809 T36808 pobj E2f3,for
R11133 T36810 T36811 punct (,red
R11134 T36811 T36809 parataxis red,E2f3
R11135 T36812 T36811 punct ),red
R11136 T36813 T36809 cc and,E2f3
R11137 T36814 T36809 conj DAPI,E2f3
R11138 T36815 T36816 punct (,blue
R11139 T36816 T36814 parataxis blue,DAPI
R11140 T36817 T36816 punct ),blue
R11141 T36818 T36789 punct .,stained
R11142 T36820 T36821 det The,arrow
R11143 T36821 T36822 nsubj arrow,indicates
R11144 T36823 T36824 det the,junction
R11145 T36824 T36822 dobj junction,indicates
R11146 T36825 T36824 prep between,junction
R11147 T36826 T36827 det the,peripheral
R11148 T36827 T36825 pobj peripheral,between
R11149 T36828 T36829 npadvmod E2f3,null
R11150 T36829 T36827 amod null,peripheral
R11151 T36830 T36827 cc and,peripheral
R11152 T36831 T36832 nmod WT,retina
R11153 T36832 T36827 conj retina,peripheral
R11154 T36833 T36831 amod central,WT
R11155 T36834 T36832 compound P0,retina
R11156 T36835 T36822 punct .,indicates
R11157 T36838 T36839 det the,absence
R11158 T36839 T36837 dobj absence,Note
R11159 T36840 T36839 prep of,absence
R11160 T36841 T36842 compound E2f3,protein
R11161 T36842 T36840 pobj protein,of
R11162 T36843 T36839 prep in,absence
R11163 T36844 T36845 det the,RPCs
R11164 T36845 T36843 pobj RPCs,in
R11165 T36846 T36845 amod peripheral,RPCs
R11166 T36847 T36848 compound E2f3,KO
R11167 T36848 T36845 compound KO,RPCs
R11168 T36849 T36839 prep at,absence
R11169 T36850 T36849 pobj P0,at
R11170 T36851 T36839 cc and,absence
R11171 T36852 T36853 prep in,at
R11172 T36853 T36839 conj at,absence
R11173 T36854 T36855 amod peripheral,neurons
R11174 T36855 T36852 pobj neurons,in
R11175 T36856 T36855 amod inner,neurons
R11176 T36857 T36855 amod retinal,neurons
R11177 T36858 T36853 pobj P18,at
R11178 T36859 T36837 punct .,Note
R11179 T36861 T36862 advmod Far,right
R11180 T36862 T36863 amod right,panel
R11181 T36863 T36864 dep panel,stained
R11182 T36865 T36864 punct : ,stained
R11183 T36866 T36867 nmod P18,sections
R11184 T36867 T36864 nsubjpass sections,stained
R11185 T36868 T36867 amod retinal,sections
R11186 T36869 T36867 prep of,sections
R11187 T36870 T36871 det the,genotypes
R11188 T36871 T36869 pobj genotypes,of
R11189 T36872 T36871 amod indicated,genotypes
R11190 T36873 T36864 auxpass were,stained
R11191 T36874 T36864 prep for,stained
R11192 T36875 T36874 pobj Rb,for
R11193 T36876 T36877 punct (,red
R11194 T36877 T36875 parataxis red,Rb
R11195 T36878 T36877 punct ),red
R11196 T36879 T36875 cc and,Rb
R11197 T36880 T36875 conj DAPI,Rb
R11198 T36881 T36882 punct (,blue
R11199 T36882 T36880 parataxis blue,DAPI
R11200 T36883 T36882 punct ),blue
R11201 T36884 T36864 punct .,stained
R11202 T36887 T36888 det the,absence
R11203 T36888 T36886 dobj absence,Note
R11204 T36889 T36888 prep of,absence
R11205 T36890 T36891 compound Rb,protein
R11206 T36891 T36889 pobj protein,of
R11207 T36892 T36888 prep in,absence
R11208 T36893 T36894 det the,neurons
R11209 T36894 T36892 pobj neurons,in
R11210 T36895 T36894 amod peripheral,neurons
R11211 T36896 T36897 nmod Rb,KO
R11212 T36897 T36894 nmod KO,neurons
R11213 T36898 T36894 amod inner,neurons
R11214 T36899 T36894 amod retinal,neurons
R11215 T36900 T36886 punct .,Note
R11216 T36902 T36903 punct (,B
R11217 T36903 T36904 meta B,stained
R11218 T36905 T36903 punct ),B
R11219 T36906 T36907 nmod WT,sections
R11220 T36907 T36904 nsubjpass sections,stained
R11221 T36908 T36907 nmod P18,sections
R11222 T36909 T36907 amod retinal,sections
R11223 T36910 T36904 auxpass were,stained
R11224 T36911 T36904 prep for,stained
R11225 T36912 T36911 pobj nuclei,for
R11226 T36913 T36914 punct (,blue
R11227 T36914 T36912 parataxis blue,nuclei
R11228 T36915 T36914 dep DAPI,blue
R11229 T36916 T36914 punct ", ",blue
R11230 T36917 T36914 punct ),blue
R11231 T36918 T36912 punct ", ",nuclei
R11232 T36919 T36912 conj E2f3,nuclei
R11233 T36920 T36921 punct (,red
R11234 T36921 T36919 parataxis red,E2f3
R11235 T36922 T36921 punct ),red
R11236 T36923 T36919 cc or,E2f3
R11237 T36924 T36919 conj Rb,E2f3
R11238 T36925 T36926 punct (,red
R11239 T36926 T36924 parataxis red,Rb
R11240 T36927 T36926 punct ),red
R11241 T36928 T36924 punct ", ",Rb
R11242 T36929 T36924 cc and,Rb
R11243 T36930 T36924 conj Chat,Rb
R11244 T36931 T36930 cc plus,Chat
R11245 T36932 T36930 conj Slc18a3,Chat
R11246 T36933 T36934 punct (,green
R11247 T36934 T36932 parataxis green,Slc18a3
R11248 T36935 T36934 punct ),green
R11249 T36936 T36904 punct .,stained
R11250 T36938 T36939 nsubj Arrows,indicate
R11251 T36940 T36941 amod double,labelled
R11252 T36941 T36943 amod labelled,soma
R11253 T36942 T36941 punct -,labelled
R11254 T36943 T36939 dobj soma,indicate
R11255 T36944 T36939 punct .,indicate
R11256 T36947 T36948 mark that,labelled
R11257 T36948 T36946 ccomp labelled,Note
R11258 T36949 T36950 det the,processes
R11259 T36950 T36948 nsubjpass processes,labelled
R11260 T36951 T36950 compound IPL,processes
R11261 T36952 T36948 auxpass are,labelled
R11262 T36953 T36948 advmod also,labelled
R11263 T36954 T36948 amod double,labelled
R11264 T36955 T36948 punct -,labelled
R11265 T36956 T36946 punct .,Note
R11266 T36958 T36959 compound Scale,bars
R11267 T36959 T36960 nsubj bars,are
R11268 T36961 T36962 nummod 50,μm
R11269 T36962 T36960 attr μm,are
R11270 T36963 T36960 punct .,are

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T36739 0-4 PR_EXT:000006854 denotes E2f3
T36740 9-11 PR_EXT:000013773 denotes Rb
T36741 12-22 GO:0010467 denotes Expression
T36742 75-82 UBERON:0000966 denotes retinal
T36743 109-118 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T36744 136-140 PR_EXT:000006854 denotes E2f3
T36745 151-155 CHEBI:51231 denotes DAPI
T36746 209-213 PR_EXT:000006854 denotes E2f3
T36747 214-218 SO_EXT:sequence_nullness denotes null
T36748 219-229 _FRAGMENT denotes peripheral
T36749 248-254 UBERON:0013682 denotes retina
T36750 234-236 SO_EXT:wild_type_entity_or_quality denotes WT
T36751 276-280 PR_EXT:000006854 denotes E2f3
T36752 281-288 CHEBI_PR_EXT:protein denotes protein
T36753 307-311 PR_EXT:000006854 denotes E2f3
T36754 315-319 CL:0002672 denotes RPCs
T36755 333-343 _FRAGMENT denotes peripheral
T36756 350-357 UBERON:0013682 denotes retinal
T36757 358-365 CL:0000540 denotes neurons
T36758 395-402 UBERON:0000966 denotes retinal
T36759 429-438 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T36760 456-458 PR_EXT:000013773 denotes Rb
T36761 469-473 CHEBI:51231 denotes DAPI
T36762 502-504 PR_EXT:000013773 denotes Rb
T36763 505-512 CHEBI_PR_EXT:protein denotes protein
T36764 520-530 _FRAGMENT denotes peripheral
T36765 543-550 UBERON:0013682 denotes retinal
T36766 531-533 PR_EXT:000013773 denotes Rb
T36767 551-558 CL:0000540 denotes neurons
T36768 564-566 SO_EXT:wild_type_entity_or_quality denotes WT
T36769 571-578 UBERON:0000966 denotes retinal
T36770 605-611 GO:0005634 denotes nuclei
T36771 613-617 CHEBI:51231 denotes DAPI
T36772 626-630 PR_EXT:000006854 denotes E2f3
T36773 640-642 PR_EXT:000013773 denotes Rb
T36774 654-658 GO_PR_EXT:choline_O_acetyltransferase denotes Chat
T36775 664-671 PR_EXT:000014968 denotes Slc18a3
T36776 704-712 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
T36777 713-717 GO:0044297 denotes soma
T36778 737-746 GO:0042995 denotes processes
T36779 763-771 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labelled
R11103 T36749 T36748 _lexicallyChainedTo retina,peripheral
R11104 T36756 T36755 _lexicallyChainedTo retinal,peripheral
R11105 T36765 T36764 _lexicallyChainedTo retinal,peripheral

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T36708 0-4 PR:000006854 denotes E2f3
T36709 9-11 PR:000013773 denotes Rb
T36710 12-22 GO:0010467 denotes Expression
T36711 75-82 UBERON:0000966 denotes retinal
T36712 136-140 PR:000006854 denotes E2f3
T36713 151-155 CHEBI:51231 denotes DAPI
T36714 209-213 PR:000006854 denotes E2f3
T36715 219-229 _FRAGMENT denotes peripheral
T36716 248-254 UBERON:0013682 denotes retina
T36717 276-280 PR:000006854 denotes E2f3
T36718 307-311 PR:000006854 denotes E2f3
T36719 315-319 CL:0002672 denotes RPCs
T36720 333-343 _FRAGMENT denotes peripheral
T36721 350-357 UBERON:0013682 denotes retinal
T36722 358-365 CL:0000540 denotes neurons
T36723 395-402 UBERON:0000966 denotes retinal
T36724 456-458 PR:000013773 denotes Rb
T36725 469-473 CHEBI:51231 denotes DAPI
T36726 502-504 PR:000013773 denotes Rb
T36727 520-530 _FRAGMENT denotes peripheral
T36728 543-550 UBERON:0013682 denotes retinal
T36729 531-533 PR:000013773 denotes Rb
T36730 551-558 CL:0000540 denotes neurons
T36731 571-578 UBERON:0000966 denotes retinal
T36732 605-611 GO:0005634 denotes nuclei
T36733 613-617 CHEBI:51231 denotes DAPI
T36734 626-630 PR:000006854 denotes E2f3
T36735 640-642 PR:000013773 denotes Rb
T36736 664-671 PR:000014968 denotes Slc18a3
T36737 713-717 GO:0044297 denotes soma
T36738 737-746 GO:0042995 denotes processes
R11100 T36716 T36715 _lexicallyChainedTo retina,peripheral
R11101 T36721 T36720 _lexicallyChainedTo retinal,peripheral
R11102 T36728 T36727 _lexicallyChainedTo retinal,peripheral