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PMC:1914394 / 11676-12403 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6896 0-2 PRP denotes We
T6897 3-7 VBD denotes used
T6898 8-11 DT denotes the
T6899 18-27 NN denotes transgene
T6900 12-13 NN denotes α
T6901 14-17 NN denotes Cre
T6902 13-14 HYPH denotes -
T6903 28-30 TO denotes to
T6904 31-37 VB denotes delete
T6905 38-44 VBN denotes floxed
T6906 48-52 NN denotes exon
T6907 45-47 NN denotes Rb
T6908 53-55 CD denotes 19
T6909 56-58 IN denotes at
T6910 59-68 JJ denotes embryonic
T6911 69-72 NN denotes day
T6912 73-74 -LRB- denotes (
T6913 74-75 NN denotes E
T6914 75-76 -RRB- denotes )
T6915 77-79 CD denotes 10
T6916 80-82 IN denotes in
T6917 83-93 JJ denotes peripheral
T6918 94-100 NN denotes retina
T6919 101-102 -LRB- denotes [
T6920 102-103 CD denotes 2
T6921 103-104 -RRB- denotes ]
T6922 104-105 . denotes .
T6923 105-237 sentence denotes RbloxP/loxP;α-Cre mice were bred with strains lacking E2f1 or E2f2 in the germ line, or a strain carrying a floxed E2f3 allele [5].
T6924 106-112 NN denotes RbloxP
T6925 113-117 NN denotes loxP
T6926 112-113 HYPH denotes /
T6927 124-128 NNS denotes mice
T6928 117-118 : denotes ;
T6929 118-119 NN denotes α
T6930 120-123 NN denotes Cre
T6931 119-120 HYPH denotes -
T6932 134-138 VBN denotes bred
T6933 129-133 VBD denotes were
T6934 139-143 IN denotes with
T6935 144-151 NNS denotes strains
T6936 152-159 VBG denotes lacking
T6937 160-164 NN denotes E2f1
T6938 165-167 CC denotes or
T6939 168-172 NN denotes E2f2
T6940 173-175 IN denotes in
T6941 176-179 DT denotes the
T6942 185-189 NN denotes line
T6943 180-184 NN denotes germ
T6944 189-191 , denotes ,
T6945 191-193 CC denotes or
T6946 194-195 DT denotes a
T6947 196-202 NN denotes strain
T6948 203-211 VBG denotes carrying
T6949 212-213 DT denotes a
T6950 226-232 NN denotes allele
T6951 214-220 VBN denotes floxed
T6952 221-225 NN denotes E2f3
T6953 233-234 -LRB- denotes [
T6954 234-235 CD denotes 5
T6955 235-236 -RRB- denotes ]
T6956 236-237 . denotes .
T6957 237-429 sentence denotes RbloxP/loxP;E2f1+/− and RbloxP/loxP;E2f1+/−;α-Cre mice were bred to produce RbloxP/loxP;E2f1−/−;α-Cre mice at a frequency of 1/8 and littermate controls at the same or higher (1/4) frequency.
T6958 238-244 NN denotes RbloxP
T6959 245-249 NN denotes loxP
T6960 244-245 HYPH denotes /
T6961 288-292 NNS denotes mice
T6962 249-250 : denotes ;
T6963 250-254 NN denotes E2f1
T6964 254-255 SYM denotes +
T6965 255-256 HYPH denotes /
T6966 256-257 SYM denotes −
T6967 258-261 CC denotes and
T6968 262-268 NN denotes RbloxP
T6969 269-273 NN denotes loxP
T6970 268-269 HYPH denotes /
T6971 273-274 : denotes ;
T6972 274-278 NN denotes E2f1
T6973 278-279 SYM denotes +
T6974 279-280 HYPH denotes /
T6975 280-281 SYM denotes −
T6976 281-282 : denotes ;
T6977 282-283 NN denotes α
T6978 284-287 NN denotes Cre
T6979 283-284 HYPH denotes -
T6980 298-302 VBN denotes bred
T6981 293-297 VBD denotes were
T6982 303-305 TO denotes to
T6983 306-313 VB denotes produce
T6984 314-320 NN denotes RbloxP
T6985 321-325 NN denotes loxP
T6986 320-321 HYPH denotes /
T6987 340-344 NNS denotes mice
T6988 325-326 : denotes ;
T6989 326-330 NN denotes E2f1
T6990 330-331 SYM denotes −
T6991 331-332 HYPH denotes /
T6992 332-333 SYM denotes −
T6993 333-334 : denotes ;
T6994 334-335 NN denotes α
T6995 336-339 NN denotes Cre
T6996 335-336 HYPH denotes -
T6997 345-347 IN denotes at
T6998 348-349 DT denotes a
T6999 350-359 NN denotes frequency
T7000 360-362 IN denotes of
T7001 363-364 CD denotes 1
T7002 365-366 CD denotes 8
T7003 364-365 SYM denotes /
T7004 367-370 CC denotes and
T7005 371-381 NN denotes littermate
T7006 382-390 NNS denotes controls
T7007 391-393 IN denotes at
T7008 394-397 DT denotes the
T7009 398-402 JJ denotes same
T7010 403-405 CC denotes or
T7011 406-412 JJR denotes higher
T7012 419-428 NN denotes frequency
T7013 413-414 -LRB- denotes (
T7014 414-415 CD denotes 1
T7015 415-416 SYM denotes /
T7016 416-417 CD denotes 4
T7017 417-418 -RRB- denotes )
T7018 428-429 . denotes .
T7019 429-554 sentence denotes For simplicity we will refer to the RbloxP/loxP;E2f1−/−;α-Cre peripheral retina as the Rb/E2f1 double knockout (DKO) retina.
T7020 430-433 IN denotes For
T7021 453-458 VB denotes refer
T7022 434-444 NN denotes simplicity
T7023 445-447 PRP denotes we
T7024 448-452 MD denotes will
T7025 459-461 IN denotes to
T7026 462-465 DT denotes the
T7027 503-509 NN denotes retina
T7028 466-472 NN denotes RbloxP
T7029 473-477 NN denotes loxP
T7030 472-473 HYPH denotes /
T7031 477-478 : denotes ;
T7032 478-482 NN denotes E2f1
T7033 482-483 SYM denotes −
T7034 483-484 HYPH denotes /
T7035 484-485 SYM denotes −
T7036 485-486 : denotes ;
T7037 486-487 NN denotes α
T7038 488-491 NN denotes Cre
T7039 487-488 HYPH denotes -
T7040 492-502 JJ denotes peripheral
T7041 510-512 IN denotes as
T7042 513-516 DT denotes the
T7043 547-553 NN denotes retina
T7044 517-519 NN denotes Rb
T7045 520-524 NN denotes E2f1
T7046 519-520 HYPH denotes /
T7047 525-531 JJ denotes double
T7048 532-540 NN denotes knockout
T7049 541-542 -LRB- denotes (
T7050 542-545 NN denotes DKO
T7051 545-546 -RRB- denotes )
T7052 553-554 . denotes .
T7053 554-616 sentence denotes Similar strategies were employed in the case of E2f2 or E2f3.
T7054 555-562 JJ denotes Similar
T7055 563-573 NNS denotes strategies
T7056 579-587 VBN denotes employed
T7057 574-578 VBD denotes were
T7058 588-590 IN denotes in
T7059 591-594 DT denotes the
T7060 595-599 NN denotes case
T7061 600-602 IN denotes of
T7062 603-607 NN denotes E2f2
T7063 608-610 CC denotes or
T7064 611-615 NN denotes E2f3
T7065 615-616 . denotes .
T7066 616-727 sentence denotes Cre-mediated excision of Rb and E2f3 alleles in the retina was confirmed by PCR as described previously [2,5].
T7067 617-620 NN denotes Cre
T7068 621-629 VBN denotes mediated
T7069 620-621 HYPH denotes -
T7070 630-638 NN denotes excision
T7071 680-689 VBN denotes confirmed
T7072 639-641 IN denotes of
T7073 642-644 NN denotes Rb
T7074 654-661 NNS denotes alleles
T7075 645-648 CC denotes and
T7076 649-653 NN denotes E2f3
T7077 662-664 IN denotes in
T7078 665-668 DT denotes the
T7079 669-675 NN denotes retina
T7080 676-679 VBD denotes was
T7081 690-692 IN denotes by
T7082 693-696 NN denotes PCR
T7083 697-699 IN denotes as
T7084 700-709 VBN denotes described
T7085 710-720 RB denotes previously
T7086 721-722 -LRB- denotes [
T7087 724-725 CD denotes 5
T7088 722-723 CD denotes 2
T7089 723-724 , denotes ,
T7090 725-726 -RRB- denotes ]
T7091 726-727 . denotes .
R1525 T6896 T6897 nsubj We,used
R1526 T6898 T6899 det the,transgene
R1527 T6899 T6897 dobj transgene,used
R1528 T6900 T6901 compound α,Cre
R1529 T6901 T6899 compound Cre,transgene
R1530 T6902 T6901 punct -,Cre
R1531 T6903 T6904 aux to,delete
R1532 T6904 T6897 advcl delete,used
R1533 T6905 T6906 amod floxed,exon
R1534 T6906 T6904 dobj exon,delete
R1535 T6907 T6906 compound Rb,exon
R1536 T6908 T6906 nummod 19,exon
R1537 T6909 T6904 prep at,delete
R1538 T6910 T6911 amod embryonic,day
R1539 T6911 T6909 pobj day,at
R1540 T6912 T6911 punct (,day
R1541 T6913 T6911 appos E,day
R1542 T6914 T6911 punct ),day
R1543 T6915 T6911 nummod 10,day
R1544 T6916 T6904 prep in,delete
R1545 T6917 T6918 amod peripheral,retina
R1546 T6918 T6916 pobj retina,in
R1547 T6919 T6920 punct [,2
R1548 T6920 T6897 parataxis 2,used
R1549 T6921 T6920 punct ],2
R1550 T6922 T6897 punct .,used
R1551 T6924 T6925 nmod RbloxP,loxP
R1552 T6925 T6927 nmod loxP,mice
R1553 T6926 T6925 punct /,loxP
R1554 T6927 T6932 nsubjpass mice,bred
R1555 T6928 T6925 punct ;,loxP
R1556 T6929 T6930 compound α,Cre
R1557 T6930 T6925 appos Cre,loxP
R1558 T6931 T6930 punct -,Cre
R1559 T6933 T6932 auxpass were,bred
R1560 T6934 T6932 prep with,bred
R1561 T6935 T6934 pobj strains,with
R1562 T6936 T6935 acl lacking,strains
R1563 T6937 T6936 dobj E2f1,lacking
R1564 T6938 T6937 cc or,E2f1
R1565 T6939 T6937 conj E2f2,E2f1
R1566 T6940 T6936 prep in,lacking
R1567 T6941 T6942 det the,line
R1568 T6942 T6940 pobj line,in
R1569 T6943 T6942 compound germ,line
R1570 T6944 T6935 punct ", ",strains
R1571 T6945 T6935 cc or,strains
R1572 T6946 T6947 det a,strain
R1573 T6947 T6935 conj strain,strains
R1574 T6948 T6947 acl carrying,strain
R1575 T6949 T6950 det a,allele
R1576 T6950 T6948 dobj allele,carrying
R1577 T6951 T6950 amod floxed,allele
R1578 T6952 T6950 compound E2f3,allele
R1579 T6953 T6954 punct [,5
R1580 T6954 T6932 parataxis 5,bred
R1581 T6955 T6954 punct ],5
R1582 T6956 T6932 punct .,bred
R1583 T6958 T6959 nmod RbloxP,loxP
R1584 T6959 T6961 nmod loxP,mice
R1585 T6960 T6959 punct /,loxP
R1586 T6961 T6980 nsubjpass mice,bred
R1587 T6962 T6959 punct ;,loxP
R1588 T6963 T6959 appos E2f1,loxP
R1589 T6964 T6963 punct +,E2f1
R1590 T6965 T6963 punct /,E2f1
R1591 T6966 T6963 punct −,E2f1
R1592 T6967 T6959 cc and,loxP
R1593 T6968 T6969 compound RbloxP,loxP
R1594 T6969 T6959 conj loxP,loxP
R1595 T6970 T6969 punct /,loxP
R1596 T6971 T6969 punct ;,loxP
R1597 T6972 T6969 appos E2f1,loxP
R1598 T6973 T6972 punct +,E2f1
R1599 T6974 T6972 punct /,E2f1
R1600 T6975 T6972 punct −,E2f1
R1601 T6976 T6959 punct ;,loxP
R1602 T6977 T6978 compound α,Cre
R1603 T6978 T6959 appos Cre,loxP
R1604 T6979 T6978 punct -,Cre
R1605 T6981 T6980 auxpass were,bred
R1606 T6982 T6983 aux to,produce
R1607 T6983 T6980 advcl produce,bred
R1608 T6984 T6985 nmod RbloxP,loxP
R1609 T6985 T6987 nmod loxP,mice
R1610 T6986 T6985 punct /,loxP
R1611 T6987 T6983 dobj mice,produce
R1612 T6988 T6985 punct ;,loxP
R1613 T6989 T6985 appos E2f1,loxP
R1614 T6990 T6989 punct −,E2f1
R1615 T6991 T6989 punct /,E2f1
R1616 T6992 T6989 punct −,E2f1
R1617 T6993 T6985 punct ;,loxP
R1618 T6994 T6995 compound α,Cre
R1619 T6995 T6985 appos Cre,loxP
R1620 T6996 T6995 punct -,Cre
R1621 T6997 T6983 prep at,produce
R1622 T6998 T6999 det a,frequency
R1623 T6999 T6997 pobj frequency,at
R1624 T7000 T6999 prep of,frequency
R1625 T7001 T7002 nummod 1,8
R1626 T7002 T7000 pobj 8,of
R1627 T7003 T7002 punct /,8
R1628 T7004 T6980 cc and,bred
R1629 T7005 T7006 compound littermate,controls
R1630 T7006 T6980 conj controls,bred
R1631 T7007 T7006 prep at,controls
R1632 T7008 T7009 det the,same
R1633 T7009 T7007 pobj same,at
R1634 T7010 T7009 cc or,same
R1635 T7011 T7012 nmod higher,frequency
R1636 T7012 T7009 conj frequency,same
R1637 T7013 T7014 punct (,1
R1638 T7014 T7011 parataxis 1,higher
R1639 T7015 T7016 punct /,4
R1640 T7016 T7014 prep 4,1
R1641 T7017 T7014 punct ),1
R1642 T7018 T7006 punct .,controls
R1643 T7020 T7021 prep For,refer
R1644 T7022 T7020 pobj simplicity,For
R1645 T7023 T7021 nsubj we,refer
R1646 T7024 T7021 aux will,refer
R1647 T7025 T7021 prep to,refer
R1648 T7026 T7027 det the,retina
R1649 T7027 T7025 pobj retina,to
R1650 T7028 T7029 nmod RbloxP,loxP
R1651 T7029 T7027 nmod loxP,retina
R1652 T7030 T7029 punct /,loxP
R1653 T7031 T7029 punct ;,loxP
R1654 T7032 T7029 appos E2f1,loxP
R1655 T7033 T7032 punct −,E2f1
R1656 T7034 T7032 punct /,E2f1
R1657 T7035 T7032 punct −,E2f1
R1658 T7036 T7029 punct ;,loxP
R1659 T7037 T7038 compound α,Cre
R1660 T7038 T7029 appos Cre,loxP
R1661 T7039 T7038 punct -,Cre
R1662 T7040 T7027 amod peripheral,retina
R1663 T7041 T7021 prep as,refer
R1664 T7042 T7043 det the,retina
R1665 T7043 T7041 pobj retina,as
R1666 T7044 T7045 nmod Rb,E2f1
R1667 T7045 T7043 nmod E2f1,retina
R1668 T7046 T7045 punct /,E2f1
R1669 T7047 T7048 amod double,knockout
R1670 T7048 T7045 appos knockout,E2f1
R1671 T7049 T7048 punct (,knockout
R1672 T7050 T7048 appos DKO,knockout
R1673 T7051 T7043 punct ),retina
R1674 T7052 T7021 punct .,refer
R1675 T7054 T7055 amod Similar,strategies
R1676 T7055 T7056 nsubjpass strategies,employed
R1677 T7057 T7056 auxpass were,employed
R1678 T7058 T7056 prep in,employed
R1679 T7059 T7060 det the,case
R1680 T7060 T7058 pobj case,in
R1681 T7061 T7060 prep of,case
R1682 T7062 T7061 pobj E2f2,of
R1683 T7063 T7062 cc or,E2f2
R1684 T7064 T7062 conj E2f3,E2f2
R1685 T7065 T7056 punct .,employed
R1686 T7067 T7068 npadvmod Cre,mediated
R1687 T7068 T7070 amod mediated,excision
R1688 T7069 T7068 punct -,mediated
R1689 T7070 T7071 nsubjpass excision,confirmed
R1690 T7072 T7070 prep of,excision
R1691 T7073 T7074 nmod Rb,alleles
R1692 T7074 T7072 pobj alleles,of
R1693 T7075 T7073 cc and,Rb
R1694 T7076 T7073 conj E2f3,Rb
R1695 T7077 T7070 prep in,excision
R1696 T7078 T7079 det the,retina
R1697 T7079 T7077 pobj retina,in
R1698 T7080 T7071 auxpass was,confirmed
R1699 T7081 T7071 prep by,confirmed
R1700 T7082 T7081 pobj PCR,by
R1701 T7083 T7084 mark as,described
R1702 T7084 T7071 advcl described,confirmed
R1703 T7085 T7084 advmod previously,described
R1704 T7086 T7087 punct [,5
R1705 T7087 T7071 parataxis 5,confirmed
R1706 T7088 T7087 nummod 2,5
R1707 T7089 T7087 punct ",",5
R1708 T7090 T7087 punct ],5
R1709 T7091 T7071 punct .,confirmed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6711 18-27 SO_EXT:0000902 denotes transgene
T6712 31-37 SO_EXT:sequence_deletion_process denotes delete
T6713 38-44 SO:0000359 denotes floxed
T6714 45-47 PR_EXT:000013773 denotes Rb
T6715 48-52 SO_EXT:0000147 denotes exon
T6716 59-68 UBERON:0000922 denotes embryonic
T6717 83-100 UBERON:0013682 denotes peripheral retina
T6718 106-108 PR_EXT:000013773 denotes Rb
T6719 108-112 SO_EXT:0000346 denotes loxP
T6720 113-117 SO_EXT:0000346 denotes loxP
T6721 124-128 NCBITaxon:10088 denotes mice
T6722 134-138 GO_EXT:breeding denotes bred
T6723 160-164 PR_EXT:000006852 denotes E2f1
T6724 168-172 PR_EXT:000006853 denotes E2f2
T6725 214-220 SO:0000359 denotes floxed
T6726 221-225 PR_EXT:000006854 denotes E2f3
T6727 226-232 SO_EXT:0001023 denotes allele
T6728 238-240 PR_EXT:000013773 denotes Rb
T6729 240-244 SO_EXT:0000346 denotes loxP
T6730 245-249 SO_EXT:0000346 denotes loxP
T6731 250-254 PR_EXT:000006852 denotes E2f1
T6732 254-255 SO_EXT:normal_or_wild_type_or_present denotes +
T6733 256-257 SO_EXT:sequence_nullness_or_absence denotes −
T6734 262-264 PR_EXT:000013773 denotes Rb
T6735 264-268 SO_EXT:0000346 denotes loxP
T6736 269-273 SO_EXT:0000346 denotes loxP
T6737 274-278 PR_EXT:000006852 denotes E2f1
T6738 278-279 SO_EXT:normal_or_wild_type_or_present denotes +
T6739 280-281 SO_EXT:sequence_nullness_or_absence denotes −
T6740 288-292 NCBITaxon:10088 denotes mice
T6741 298-302 GO_EXT:breeding denotes bred
T6742 314-316 PR_EXT:000013773 denotes Rb
T6743 316-320 SO_EXT:0000346 denotes loxP
T6744 321-325 SO_EXT:0000346 denotes loxP
T6745 326-330 PR_EXT:000006852 denotes E2f1
T6746 330-331 SO_EXT:sequence_nullness_or_absence denotes −
T6747 332-333 SO_EXT:sequence_nullness_or_absence denotes −
T6748 340-344 NCBITaxon:10088 denotes mice
T6749 466-468 PR_EXT:000013773 denotes Rb
T6750 468-472 SO_EXT:0000346 denotes loxP
T6751 473-477 SO_EXT:0000346 denotes loxP
T6752 478-482 PR_EXT:000006852 denotes E2f1
T6753 482-483 SO_EXT:sequence_nullness_or_absence denotes −
T6754 484-485 SO_EXT:sequence_nullness_or_absence denotes −
T6755 492-509 UBERON:0013682 denotes peripheral retina
T6756 517-519 PR_EXT:000013773 denotes Rb
T6757 520-524 PR_EXT:000006852 denotes E2f1
T6758 547-553 UBERON:0000966 denotes retina
T6759 603-607 PR_EXT:000006853 denotes E2f2
T6760 611-615 PR_EXT:000006854 denotes E2f3
T6761 630-638 SO_EXT:sequence_deletion_process denotes excision
T6762 642-644 PR_EXT:000013773 denotes Rb
T6763 649-653 PR_EXT:000006854 denotes E2f3
T6764 654-661 SO_EXT:0001023 denotes alleles
T6765 669-675 UBERON:0000966 denotes retina

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6616 603-607 PR:000006853 denotes E2f2
T6617 611-615 PR:000006854 denotes E2f3
T6618 642-644 PR:000013773 denotes Rb
T6619 649-653 PR:000006854 denotes E2f3
T6620 654-661 SO:0001023 denotes alleles
T6621 669-675 UBERON:0000966 denotes retina
T6579 18-27 SO:0000902 denotes transgene
T6580 38-44 SO:0000359 denotes floxed
T6581 45-47 PR:000013773 denotes Rb
T6582 48-52 SO:0000147 denotes exon
T6583 59-68 UBERON:0000922 denotes embryonic
T6584 83-100 UBERON:0013682 denotes peripheral retina
T6585 106-108 PR:000013773 denotes Rb
T6586 108-112 SO:0000346 denotes loxP
T6587 113-117 SO:0000346 denotes loxP
T6588 124-128 NCBITaxon:10088 denotes mice
T6589 160-164 PR:000006852 denotes E2f1
T6590 168-172 PR:000006853 denotes E2f2
T6591 214-220 SO:0000359 denotes floxed
T6592 221-225 PR:000006854 denotes E2f3
T6593 226-232 SO:0001023 denotes allele
T6594 238-240 PR:000013773 denotes Rb
T6595 240-244 SO:0000346 denotes loxP
T6596 245-249 SO:0000346 denotes loxP
T6597 250-254 PR:000006852 denotes E2f1
T6598 262-264 PR:000013773 denotes Rb
T6599 264-268 SO:0000346 denotes loxP
T6600 269-273 SO:0000346 denotes loxP
T6601 274-278 PR:000006852 denotes E2f1
T6602 288-292 NCBITaxon:10088 denotes mice
T6603 314-316 PR:000013773 denotes Rb
T6604 316-320 SO:0000346 denotes loxP
T6605 321-325 SO:0000346 denotes loxP
T6606 326-330 PR:000006852 denotes E2f1
T6607 340-344 NCBITaxon:10088 denotes mice
T6608 466-468 PR:000013773 denotes Rb
T6609 468-472 SO:0000346 denotes loxP
T6610 473-477 SO:0000346 denotes loxP
T6611 478-482 PR:000006852 denotes E2f1
T6612 492-509 UBERON:0013682 denotes peripheral retina
T6613 517-519 PR:000013773 denotes Rb
T6614 520-524 PR:000006852 denotes E2f1
T6615 547-553 UBERON:0000966 denotes retina

2_test

Id Subject Object Predicate Lexical cue
17608565-15193257-84868967 102-103 15193257 denotes 2
17608565-11719808-84868968 234-235 11719808 denotes 5
17608565-15193257-84868969 722-723 15193257 denotes 2
17608565-11719808-84868970 724-725 11719808 denotes 5
T96361 102-103 15193257 denotes 2
T68826 234-235 11719808 denotes 5
T63715 722-723 15193257 denotes 2
T65532 724-725 11719808 denotes 5