PMC:1892782 / 33050-33636 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1892782","sourcedb":"PMC","sourceid":"1892782","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1892782","text":"Finally, we compared the prediction accuracy of RNAstrand with the strand prediction of EvoFold. Applying EvoFold to automatically created RNA alignments extracted from Rfam families is not easily feasible since EvoFold requires a meaningful phylogenetic tree (ideally estimated from neutrally evolving sites) as input. Such data are not available and cannot be generated easily for most combinations of Rfam sequences. The heuristic suggested in [2], namely to rescale a neighbor-joining tree generated from the input alignment, produced very poor classification results in most cases.","tracks":[{"project":"2_test","denotations":[{"id":"17540014-16628248-1690057","span":{"begin":448,"end":449},"obj":"16628248"}],"attributes":[{"subj":"17540014-16628248-1690057","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#93ece6","default":true}]}]}}