PMC:1892782 / 32048-32542 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1892782","sourcedb":"PMC","sourceid":"1892782","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1892782","text":"A naïve way to determine the likely reading direction is to score an alignment and its reverse complement using RNAz, EvoFold, or another tool for recognizing structured RNAs. This approach was taken e.g. in [1,2,4,5]. A manual inspection of the data, however, showed that this approach is problematic in particular in those cases where RNAz scores are high for both reading directions. This is the case in particular for microRNA precursors, but also for many other small house-keeping ncRNAs.","tracks":[{"project":"2_test","denotations":[{"id":"17540014-16273071-1690053","span":{"begin":209,"end":210},"obj":"16273071"},{"id":"17540014-16628248-1690054","span":{"begin":211,"end":212},"obj":"16628248"},{"id":"17540014-16204130-1690055","span":{"begin":213,"end":214},"obj":"16204130"},{"id":"17540014-16425273-1690056","span":{"begin":215,"end":216},"obj":"16425273"}],"attributes":[{"subj":"17540014-16273071-1690053","pred":"source","obj":"2_test"},{"subj":"17540014-16628248-1690054","pred":"source","obj":"2_test"},{"subj":"17540014-16204130-1690055","pred":"source","obj":"2_test"},{"subj":"17540014-16425273-1690056","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#ec93b3","default":true}]}]}}