PMC:1892782 / 24277-25378 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1892782","sourcedb":"PMC","sourceid":"1892782","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1892782","text":"Table 2 Accuracies depending on different alignment features.\nc = 0\nalignment feature N A A + A -\nNS = 2 4487 0.824 0.829 0.819\nNS = 3 5311 0.833 0.830 0.837\nNS = 4 6388 0.828 0.830 0.827\nNS = 5 7234 0.797 0.805 0.789\nNS = 6 7500 0.832 0.835 0.829\n50 ≤ sequence identity \u003c 70 13187 0.799 0.799 0.799\n70 ≤ sequence identity \u003c 80 12152 0.827 0.832 0.823\n80 ≤ sequence identity \u003c 90 5550 0.865 0.871 0.859\n90 ≤ sequence identity \u003c 100 31 0.903 0.871 0.935\n40 ≤ length ≤ 100 11191 0.768 0.773 0.763\n101 ≤ length ≤ 200 14180 0.853 0.856 0.851\n201 ≤ length ≤ 300 1697 0.637 0.641 0.634\n301 ≤ length ≤ 400 3852 0.945 0.945 0.945\nall alignments 30920 0.822 0.825 0.819\nPerformance of RNAstrand depending on various alignment features, i.e. number of sequences (NS), sequence identity and alignment length. N : number of alignments in the test sets, A: accuracy, which is defined as the fraction of correctly classified input alignments, A+: accuracy of alignments in reading direction of ncRNA, A-: accuracy of reverse complementary alignments.","divisions":[{"label":"label","span":{"begin":0,"end":7}},{"label":"caption","span":{"begin":9,"end":62}},{"label":"p","span":{"begin":9,"end":62}},{"label":"table","span":{"begin":63,"end":725}},{"label":"tr","span":{"begin":63,"end":68}},{"label":"td","span":{"begin":63,"end":68}},{"label":"tr","span":{"begin":69,"end":106}},{"label":"td","span":{"begin":69,"end":86}},{"label":"td","span":{"begin":88,"end":90}},{"label":"td","span":{"begin":92,"end":94}},{"label":"td","span":{"begin":96,"end":100}},{"label":"td","span":{"begin":102,"end":106}},{"label":"tr","span":{"begin":107,"end":140}},{"label":"td","span":{"begin":107,"end":113}},{"label":"td","span":{"begin":115,"end":119}},{"label":"td","span":{"begin":121,"end":126}},{"label":"td","span":{"begin":128,"end":133}},{"label":"td","span":{"begin":135,"end":140}},{"label":"tr","span":{"begin":141,"end":174}},{"label":"td","span":{"begin":141,"end":147}},{"label":"td","span":{"begin":149,"end":153}},{"label":"td","span":{"begin":155,"end":160}},{"label":"td","span":{"begin":162,"end":167}},{"label":"td","span":{"begin":169,"end":174}},{"label":"tr","span":{"begin":175,"end":208}},{"label":"td","span":{"begin":175,"end":181}},{"label":"td","span":{"begin":183,"end":187}},{"label":"td","span":{"begin":189,"end":194}},{"label":"td","span":{"begin":196,"end":201}},{"label":"td","span":{"begin":203,"end":208}},{"label":"tr","span":{"begin":209,"end":242}},{"label":"td","span":{"begin":209,"end":215}},{"label":"td","span":{"begin":217,"end":221}},{"label":"td","span":{"begin":223,"end":228}},{"label":"td","span":{"begin":230,"end":235}},{"label":"td","span":{"begin":237,"end":242}},{"label":"tr","span":{"begin":243,"end":276}},{"label":"td","span":{"begin":243,"end":249}},{"label":"td","span":{"begin":251,"end":255}},{"label":"td","span":{"begin":257,"end":262}},{"label":"td","span":{"begin":264,"end":269}},{"label":"td","span":{"begin":271,"end":276}},{"label":"tr","span":{"begin":277,"end":332}},{"label":"td","span":{"begin":277,"end":304}},{"label":"td","span":{"begin":306,"end":311}},{"label":"td","span":{"begin":313,"end":318}},{"label":"td","span":{"begin":320,"end":325}},{"label":"td","span":{"begin":327,"end":332}},{"label":"tr","span":{"begin":333,"end":388}},{"label":"td","span":{"begin":333,"end":360}},{"label":"td","span":{"begin":362,"end":367}},{"label":"td","span":{"begin":369,"end":374}},{"label":"td","span":{"begin":376,"end":381}},{"label":"td","span":{"begin":383,"end":388}},{"label":"tr","span":{"begin":389,"end":443}},{"label":"td","span":{"begin":389,"end":416}},{"label":"td","span":{"begin":418,"end":422}},{"label":"td","span":{"begin":424,"end":429}},{"label":"td","span":{"begin":431,"end":436}},{"label":"td","span":{"begin":438,"end":443}},{"label":"tr","span":{"begin":444,"end":497}},{"label":"td","span":{"begin":444,"end":472}},{"label":"td","span":{"begin":474,"end":476}},{"label":"td","span":{"begin":478,"end":483}},{"label":"td","span":{"begin":485,"end":490}},{"label":"td","span":{"begin":492,"end":497}},{"label":"tr","span":{"begin":498,"end":543}},{"label":"td","span":{"begin":498,"end":515}},{"label":"td","span":{"begin":517,"end":522}},{"label":"td","span":{"begin":524,"end":529}},{"label":"td","span":{"begin":531,"end":536}},{"label":"td","span":{"begin":538,"end":543}},{"label":"tr","span":{"begin":544,"end":590}},{"label":"td","span":{"begin":544,"end":562}},{"label":"td","span":{"begin":564,"end":569}},{"label":"td","span":{"begin":571,"end":576}},{"label":"td","span":{"begin":578,"end":583}},{"label":"td","span":{"begin":585,"end":590}},{"label":"tr","span":{"begin":591,"end":636}},{"label":"td","span":{"begin":591,"end":609}},{"label":"td","span":{"begin":611,"end":615}},{"label":"td","span":{"begin":617,"end":622}},{"label":"td","span":{"begin":624,"end":629}},{"label":"td","span":{"begin":631,"end":636}},{"label":"tr","span":{"begin":637,"end":682}},{"label":"td","span":{"begin":637,"end":655}},{"label":"td","span":{"begin":657,"end":661}},{"label":"td","span":{"begin":663,"end":668}},{"label":"td","span":{"begin":670,"end":675}},{"label":"td","span":{"begin":677,"end":682}},{"label":"tr","span":{"begin":683,"end":725}},{"label":"td","span":{"begin":683,"end":697}},{"label":"td","span":{"begin":699,"end":704}},{"label":"td","span":{"begin":706,"end":711}},{"label":"td","span":{"begin":713,"end":718}},{"label":"td","span":{"begin":720,"end":725}}],"tracks":[]}