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PMC:1892049 / 7618-9641 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6127 12-23 SO_EXT:genomic_DNA denotes genomic DNA
T6128 20-23 CHEBI_SO_EXT:DNA denotes DNA
T6129 304-312 SO_EXT:biological_sequence denotes sequence
T6130 329-341 SO_EXT:0000195 denotes coding exons
T6131 345-350 PR_EXT:000009158 denotes ITPR1
T6132 368-374 SO_EXT:0001026 denotes genome
T6133 380-383 SO_EXT:0000694 denotes SNP
T6134 396-404 SO_EXT:biological_sequence denotes Sequence
T6135 433-439 SO_EXT:sequence_coding_function denotes coding
T6136 440-451 SO_EXT:sequence_alteration_entity_or_process denotes alterations
T6137 484-495 SO_EXT:sequence_alteration_entity_or_process denotes alterations
T6138 621-627 SO_EXT:0001023 denotes allele
T6139 655-661 SO_EXT:0001026 denotes genome
T6140 667-670 SO_EXT:0000694 denotes SNP
T6141 745-752 SO_EXT:0001026 denotes genomic
T6142 753-761 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6143 792-797 PR_EXT:000009158 denotes ITPR1
T6144 841-845 SO_EXT:0000704 denotes gene
T6145 847-852 PR_EXT:000015827 denotes SUMF1
T6146 870-878 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6147 1017-1020 SO_EXT:0000694 denotes SNP
T6148 1035-1043 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6149 1060-1061 CHEBI_SO_EXT:base denotes b
T6150 1071-1072 CHEBI_SO_EXT:base denotes b
T6151 1097-1101 SO_EXT:0000694 denotes SNPs
T6152 1109-1117 _FRAGMENT denotes flanking
T6153 1126-1133 SO_EXT:0000239 denotes regions
T6154 1142-1150 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6155 1177-1187 _FRAGMENT denotes borders of
T6156 1192-1200 SO_EXT:0000687 denotes deletion
T6157 1209-1210 CHEBI_SO_EXT:base denotes b
T6158 1218-1227 GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation denotes telomeric
T6159 1240-1248 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6160 1294-1295 CHEBI_SO_EXT:base denotes b
T6161 1303-1314 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centromeric
T6162 1327-1335 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6163 1409-1418 SO_EXT:sequence_variation_entity_or_quality denotes variation
T6164 1432-1444 SO_EXT:polymorphism denotes polymorphism
T6165 1457-1463 SO_EXT:0001026 denotes genome
T6166 1469-1472 SO_EXT:0000694 denotes SNP
T6167 1543-1554 NCBITaxon:1 denotes individuals
T6168 1603-1614 NCBITaxon:1 denotes individuals
T6169 1633-1645 UBERON:0001016 denotes neurological
T6170 1678-1687 SO_EXT:sequence_deletion_entity_or_process denotes deletions
T6171 1702-1717 SO_EXT:coding_sequence denotes coding sequence
T6172 1728-1732 SO_EXT:0000704 denotes gene
T6173 1734-1739 PR_EXT:000009158 denotes ITPR1
T6174 1743-1748 PR_EXT:000015827 denotes SUMF1
T6175 1785-1795 NCBITaxon:1 denotes individual
T6176 1825-1833 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T6177 1851-1852 CHEBI_SO_EXT:base denotes b
T6178 1868-1874 SO_EXT:0000188 denotes intron
T6179 1884-1889 PR_EXT:000009158 denotes ITPR1
T6180 1903-1904 CHEBI_SO_EXT:base denotes b
T6181 1915-1919 SO_EXT:0000147 denotes exon
T6182 1951-1961 SO_EXT:sequence_alteration_entity_or_process denotes alteration
T6183 1991-2001 GO:0010467 denotes expression
T6184 2005-2013 GO:0008380 denotes splicing
T6185 2017-2022 PR_EXT:000009158 denotes ITPR1
R402 T6153 T6152 _lexicallyChainedTo regions,flanking
R403 T6156 T6155 _lexicallyChainedTo deletion,borders of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5882 12-19 SO:0001026 denotes genomic
T5883 329-341 SO:0000195 denotes coding exons
T5884 345-350 PR:000009158 denotes ITPR1
T5885 368-374 SO:0001026 denotes genome
T5886 380-383 SO:0000694 denotes SNP
T5887 621-627 SO:0001023 denotes allele
T5888 655-661 SO:0001026 denotes genome
T5889 667-670 SO:0000694 denotes SNP
T5890 745-752 SO:0001026 denotes genomic
T5891 792-797 PR:000009158 denotes ITPR1
T5892 841-845 SO:0000704 denotes gene
T5893 847-852 PR:000015827 denotes SUMF1
T5894 1017-1020 SO:0000694 denotes SNP
T5895 1097-1101 SO:0000694 denotes SNPs
T5896 1109-1117 _FRAGMENT denotes flanking
T5897 1126-1133 SO:0000239 denotes regions
T5898 1177-1187 _FRAGMENT denotes borders of
T5899 1192-1200 SO:0000687 denotes deletion
T5900 1457-1463 SO:0001026 denotes genome
T5901 1469-1472 SO:0000694 denotes SNP
T5902 1543-1554 NCBITaxon:1 denotes individuals
T5903 1603-1614 NCBITaxon:1 denotes individuals
T5904 1633-1645 UBERON:0001016 denotes neurological
T5905 1728-1732 SO:0000704 denotes gene
T5906 1734-1739 PR:000009158 denotes ITPR1
T5907 1743-1748 PR:000015827 denotes SUMF1
T5908 1785-1795 NCBITaxon:1 denotes individual
T5909 1868-1874 SO:0000188 denotes intron
T5910 1884-1889 PR:000009158 denotes ITPR1
T5911 1915-1919 SO:0000147 denotes exon
T5912 1991-2001 GO:0010467 denotes expression
T5913 2005-2013 GO:0008380 denotes splicing
T5914 2017-2022 PR:000009158 denotes ITPR1
R397 T5897 T5896 _lexicallyChainedTo regions,flanking
R399 T5899 T5898 _lexicallyChainedTo deletion,borders of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T7037 0-2 PRP denotes We
T7038 3-11 VBD denotes obtained
T7039 12-19 JJ denotes genomic
T7040 20-23 NN denotes DNA
T7041 24-28 IN denotes from
T7042 29-34 CD denotes three
T7043 51-58 NNS denotes members
T7044 35-43 VBN denotes affected
T7045 44-50 NN denotes family
T7046 59-62 CC denotes and
T7047 63-66 CD denotes one
T7048 74-80 NN denotes member
T7049 67-73 NN denotes family
T7050 81-85 IN denotes with
T7051 86-93 JJ denotes unknown
T7052 102-108 NN denotes status
T7053 94-101 NN denotes disease
T7054 109-113 IN denotes from
T7055 114-117 DT denotes the
T7056 118-125 NN denotes kindred
T7057 126-136 RB denotes originally
T7058 137-141 VBN denotes used
T7059 142-144 TO denotes to
T7060 145-151 VB denotes define
T7061 152-155 CC denotes and
T7062 156-159 VB denotes map
T7063 160-165 NN denotes SCA15
T7064 166-167 -LRB- denotes (
T7065 174-178 NN denotes AUS1
T7066 167-173 NN denotes family
T7067 178-180 , denotes ,
T7068 180-182 IN denotes of
T7069 183-193 JJ denotes Australian
T7070 207-213 NN denotes origin
T7071 194-199 AFX denotes Anglo
T7072 200-206 JJ denotes Celtic
T7073 199-200 HYPH denotes -
T7074 213-214 -RRB- denotes )
T7075 215-216 -LRB- denotes [
T7076 216-217 CD denotes 2
T7077 217-218 -RRB- denotes ]
T7078 218-219 . denotes .
T7079 219-395 sentence denotes We performed two experiments concurrently in three affected members of this family: sequence analysis of the coding exons of ITPR1 and high-density genome-wide SNP genotyping.
T7080 220-222 PRP denotes We
T7081 223-232 VBD denotes performed
T7082 233-236 CD denotes two
T7083 237-248 NNS denotes experiments
T7084 249-261 RB denotes concurrently
T7085 262-264 IN denotes in
T7086 265-270 CD denotes three
T7087 280-287 NNS denotes members
T7088 271-279 VBN denotes affected
T7089 288-290 IN denotes of
T7090 291-295 DT denotes this
T7091 296-302 NN denotes family
T7092 302-304 : denotes :
T7093 304-312 NN denotes sequence
T7094 313-321 NN denotes analysis
T7095 322-324 IN denotes of
T7096 325-328 DT denotes the
T7097 336-341 NNS denotes exons
T7098 329-335 VBG denotes coding
T7099 342-344 IN denotes of
T7100 345-350 NN denotes ITPR1
T7101 351-354 CC denotes and
T7102 355-359 JJ denotes high
T7103 360-367 NN denotes density
T7104 359-360 HYPH denotes -
T7105 384-394 NN denotes genotyping
T7106 368-374 NN denotes genome
T7107 374-375 HYPH denotes -
T7108 375-379 JJ denotes wide
T7109 380-383 NN denotes SNP
T7110 394-395 . denotes .
T7111 395-576 sentence denotes Sequence analysis failed to show any coding alterations segregating with disease or any alterations that were inconsistent with Mendelian patterns of inheritance within the family.
T7112 396-404 NN denotes Sequence
T7113 405-413 NN denotes analysis
T7114 414-420 VBD denotes failed
T7115 421-423 TO denotes to
T7116 424-428 VB denotes show
T7117 429-432 DT denotes any
T7118 440-451 NNS denotes alterations
T7119 433-439 NN denotes coding
T7120 452-463 VBG denotes segregating
T7121 464-468 IN denotes with
T7122 469-476 NN denotes disease
T7123 477-479 CC denotes or
T7124 480-483 DT denotes any
T7125 484-495 NNS denotes alterations
T7126 496-500 WDT denotes that
T7127 501-505 VBD denotes were
T7128 506-518 JJ denotes inconsistent
T7129 519-523 IN denotes with
T7130 524-533 JJ denotes Mendelian
T7131 534-542 NNS denotes patterns
T7132 543-545 IN denotes of
T7133 546-557 NN denotes inheritance
T7134 558-564 IN denotes within
T7135 565-568 DT denotes the
T7136 569-575 NN denotes family
T7137 575-576 . denotes .
T7138 576-864 sentence denotes However, visualization of log R ratio and B allele frequency metrics from the genome-wide SNP genotyping experiments clearly showed data consistent with a heterozygous genomic deletion across the first one-third of ITPR1 and across the first half of a neighboring gene, SUMF1 (Figure 2).
T7139 577-584 RB denotes However
T7140 702-708 VBD denotes showed
T7141 584-586 , denotes ,
T7142 586-599 NN denotes visualization
T7143 600-602 IN denotes of
T7144 603-606 NN denotes log
T7145 607-608 NN denotes R
T7146 609-614 NN denotes ratio
T7147 615-618 CC denotes and
T7148 619-620 NN denotes B
T7149 621-627 NN denotes allele
T7150 638-645 NNS denotes metrics
T7151 628-637 NN denotes frequency
T7152 646-650 IN denotes from
T7153 651-654 DT denotes the
T7154 682-693 NNS denotes experiments
T7155 655-661 NN denotes genome
T7156 662-666 JJ denotes wide
T7157 661-662 HYPH denotes -
T7158 667-670 NN denotes SNP
T7159 671-681 NN denotes genotyping
T7160 694-701 RB denotes clearly
T7161 709-713 NNS denotes data
T7162 714-724 JJ denotes consistent
T7163 725-729 IN denotes with
T7164 730-731 DT denotes a
T7165 753-761 NN denotes deletion
T7166 732-744 JJ denotes heterozygous
T7167 745-752 JJ denotes genomic
T7168 762-768 IN denotes across
T7169 769-772 DT denotes the
T7170 783-788 NN denotes third
T7171 773-778 JJ denotes first
T7172 779-782 CD denotes one
T7173 782-783 HYPH denotes -
T7174 789-791 IN denotes of
T7175 792-797 NN denotes ITPR1
T7176 798-801 CC denotes and
T7177 802-808 IN denotes across
T7178 809-812 DT denotes the
T7179 819-823 NN denotes half
T7180 813-818 JJ denotes first
T7181 824-826 IN denotes of
T7182 827-828 DT denotes a
T7183 841-845 NN denotes gene
T7184 829-840 JJ denotes neighboring
T7185 845-847 , denotes ,
T7186 847-852 NN denotes SUMF1
T7187 853-854 -LRB- denotes (
T7188 854-860 NN denotes Figure
T7189 861-862 CD denotes 2
T7190 862-863 -RRB- denotes )
T7191 863-864 . denotes .
T7192 864-1012 sentence denotes This deletion was apparent in all three affected family members studied and absent from the family member with unknown affection status (Figure 3).
T7193 865-869 DT denotes This
T7194 870-878 NN denotes deletion
T7195 879-882 VBD denotes was
T7196 883-891 JJ denotes apparent
T7197 892-894 IN denotes in
T7198 895-898 DT denotes all
T7199 921-928 NNS denotes members
T7200 899-904 CD denotes three
T7201 905-913 VBN denotes affected
T7202 914-920 NN denotes family
T7203 929-936 VBN denotes studied
T7204 937-940 CC denotes and
T7205 941-947 JJ denotes absent
T7206 948-952 IN denotes from
T7207 953-956 DT denotes the
T7208 964-970 NN denotes member
T7209 957-963 NN denotes family
T7210 971-975 IN denotes with
T7211 976-983 JJ denotes unknown
T7212 994-1000 NN denotes status
T7213 984-993 NN denotes affection
T7214 1001-1002 -LRB- denotes (
T7215 1002-1008 NN denotes Figure
T7216 1009-1010 CD denotes 3
T7217 1010-1011 -RRB- denotes )
T7218 1011-1012 . denotes .
T7219 1012-1371 sentence denotes The SNP data showed a deletion of between 188 kb and 210 kb in size; examination of SNPs at the flanking unknown regions of this deletion allowed us to delimit the borders of the deletion to 7.5 kb on the telomeric side of the deletion (between rs12634249 and rs793396) and ~14.4 kb on the centromeric side of the deletion (between rs4073665 and rs17709863).
T7220 1013-1016 DT denotes The
T7221 1021-1025 NNS denotes data
T7222 1017-1020 NN denotes SNP
T7223 1026-1032 VBD denotes showed
T7224 1151-1158 VBD denotes allowed
T7225 1033-1034 DT denotes a
T7226 1035-1043 NN denotes deletion
T7227 1044-1046 IN denotes of
T7228 1047-1054 IN denotes between
T7229 1055-1058 CD denotes 188
T7230 1059-1061 NN denotes kb
T7231 1062-1065 CC denotes and
T7232 1066-1069 CD denotes 210
T7233 1070-1072 NN denotes kb
T7234 1073-1075 IN denotes in
T7235 1076-1080 NN denotes size
T7236 1080-1081 : denotes ;
T7237 1082-1093 NN denotes examination
T7238 1094-1096 IN denotes of
T7239 1097-1101 NNS denotes SNPs
T7240 1102-1104 IN denotes at
T7241 1105-1108 DT denotes the
T7242 1126-1133 NNS denotes regions
T7243 1109-1117 VBG denotes flanking
T7244 1118-1125 JJ denotes unknown
T7245 1134-1136 IN denotes of
T7246 1137-1141 DT denotes this
T7247 1142-1150 NN denotes deletion
T7248 1159-1161 PRP denotes us
T7249 1165-1172 VB denotes delimit
T7250 1162-1164 TO denotes to
T7251 1173-1176 DT denotes the
T7252 1177-1184 NNS denotes borders
T7253 1185-1187 IN denotes of
T7254 1188-1191 DT denotes the
T7255 1192-1200 NN denotes deletion
T7256 1201-1203 IN denotes to
T7257 1204-1207 CD denotes 7.5
T7258 1208-1210 NN denotes kb
T7259 1211-1213 IN denotes on
T7260 1214-1217 DT denotes the
T7261 1228-1232 NN denotes side
T7262 1218-1227 JJ denotes telomeric
T7263 1233-1235 IN denotes of
T7264 1236-1239 DT denotes the
T7265 1240-1248 NN denotes deletion
T7266 1249-1250 -LRB- denotes (
T7267 1250-1257 IN denotes between
T7268 1258-1268 NN denotes rs12634249
T7269 1269-1272 CC denotes and
T7270 1273-1281 NN denotes rs793396
T7271 1281-1282 -RRB- denotes )
T7272 1283-1286 CC denotes and
T7273 1287-1288 SYM denotes ~
T7274 1288-1292 CD denotes 14.4
T7275 1293-1295 NN denotes kb
T7276 1296-1298 IN denotes on
T7277 1299-1302 DT denotes the
T7278 1315-1319 NN denotes side
T7279 1303-1314 JJ denotes centromeric
T7280 1320-1322 IN denotes of
T7281 1323-1326 DT denotes the
T7282 1327-1335 NN denotes deletion
T7283 1336-1337 -LRB- denotes (
T7284 1337-1344 IN denotes between
T7285 1345-1354 NN denotes rs4073665
T7286 1355-1358 CC denotes and
T7287 1359-1369 NN denotes rs17709863
T7288 1369-1370 -RRB- denotes )
T7289 1370-1371 . denotes .
T7290 1371-1655 sentence denotes In an attempt to define whether this variation was a benign polymorphism we analyzed genome-wide SNP data at this locus, produced using the same genotyping chip, from 577 individuals of European descent who were either controls or individuals with an unrelated neurological disorder.
T7291 1372-1374 IN denotes In
T7292 1448-1456 VBD denotes analyzed
T7293 1375-1377 DT denotes an
T7294 1378-1385 NN denotes attempt
T7295 1386-1388 TO denotes to
T7296 1389-1395 VB denotes define
T7297 1396-1403 IN denotes whether
T7298 1419-1422 VBD denotes was
T7299 1404-1408 DT denotes this
T7300 1409-1418 NN denotes variation
T7301 1423-1424 DT denotes a
T7302 1432-1444 NN denotes polymorphism
T7303 1425-1431 JJ denotes benign
T7304 1445-1447 PRP denotes we
T7305 1457-1463 NN denotes genome
T7306 1464-1468 JJ denotes wide
T7307 1463-1464 HYPH denotes -
T7308 1473-1477 NNS denotes data
T7309 1469-1472 NN denotes SNP
T7310 1478-1480 IN denotes at
T7311 1481-1485 DT denotes this
T7312 1486-1491 NN denotes locus
T7313 1491-1493 , denotes ,
T7314 1493-1501 VBN denotes produced
T7315 1502-1507 VBG denotes using
T7316 1508-1511 DT denotes the
T7317 1528-1532 NN denotes chip
T7318 1512-1516 JJ denotes same
T7319 1517-1527 NN denotes genotyping
T7320 1532-1534 , denotes ,
T7321 1534-1538 IN denotes from
T7322 1539-1542 CD denotes 577
T7323 1543-1554 NNS denotes individuals
T7324 1555-1557 IN denotes of
T7325 1558-1566 JJ denotes European
T7326 1567-1574 NN denotes descent
T7327 1575-1578 WP denotes who
T7328 1579-1583 VBD denotes were
T7329 1584-1590 CC denotes either
T7330 1591-1599 NNS denotes controls
T7331 1600-1602 CC denotes or
T7332 1603-1614 NNS denotes individuals
T7333 1615-1619 IN denotes with
T7334 1620-1622 DT denotes an
T7335 1646-1654 NN denotes disorder
T7336 1623-1632 JJ denotes unrelated
T7337 1633-1645 JJ denotes neurological
T7338 1654-1655 . denotes .
T7339 1655-1923 sentence denotes We failed to find any deletions affecting the coding sequence of either gene, ITPR1 or SUMF1; we did, however, identify a single individual with a possible heterozygous deletion approximately 6 kb in size within intron 40–41 of ITPR1, at least 5 kb away from exon 40.
T7340 1656-1658 PRP denotes We
T7341 1659-1665 VBD denotes failed
T7342 1767-1775 VB denotes identify
T7343 1666-1668 TO denotes to
T7344 1669-1673 VB denotes find
T7345 1674-1677 DT denotes any
T7346 1678-1687 NNS denotes deletions
T7347 1688-1697 VBG denotes affecting
T7348 1698-1701 DT denotes the
T7349 1709-1717 NN denotes sequence
T7350 1702-1708 NN denotes coding
T7351 1718-1720 IN denotes of
T7352 1721-1727 DT denotes either
T7353 1728-1732 NN denotes gene
T7354 1732-1734 , denotes ,
T7355 1734-1739 NN denotes ITPR1
T7356 1740-1742 CC denotes or
T7357 1743-1748 NN denotes SUMF1
T7358 1748-1749 : denotes ;
T7359 1750-1752 PRP denotes we
T7360 1753-1756 VBD denotes did
T7361 1756-1758 , denotes ,
T7362 1758-1765 RB denotes however
T7363 1765-1767 , denotes ,
T7364 1776-1777 DT denotes a
T7365 1785-1795 NN denotes individual
T7366 1778-1784 JJ denotes single
T7367 1796-1800 IN denotes with
T7368 1801-1802 DT denotes a
T7369 1825-1833 NN denotes deletion
T7370 1803-1811 JJ denotes possible
T7371 1812-1824 JJ denotes heterozygous
T7372 1834-1847 RB denotes approximately
T7373 1848-1849 CD denotes 6
T7374 1850-1852 NN denotes kb
T7375 1853-1855 IN denotes in
T7376 1856-1860 NN denotes size
T7377 1861-1867 IN denotes within
T7378 1868-1874 NN denotes intron
T7379 1875-1877 CD denotes 40
T7380 1877-1878 SYM denotes –
T7381 1878-1880 CD denotes 41
T7382 1881-1883 IN denotes of
T7383 1884-1889 NN denotes ITPR1
T7384 1889-1891 , denotes ,
T7385 1891-1893 RB denotes at
T7386 1900-1901 CD denotes 5
T7387 1894-1899 RBS denotes least
T7388 1902-1904 NN denotes kb
T7389 1905-1909 RB denotes away
T7390 1910-1914 IN denotes from
T7391 1915-1919 NN denotes exon
T7392 1920-1922 CD denotes 40
T7393 1922-1923 . denotes .
T7394 1923-2023 sentence denotes Given the location of this alteration it is unlikely to effect the expression or splicing of ITPR1.
T7395 1924-1929 VBN denotes Given
T7396 1965-1967 VBZ denotes is
T7397 1930-1933 DT denotes the
T7398 1934-1942 NN denotes location
T7399 1943-1945 IN denotes of
T7400 1946-1950 DT denotes this
T7401 1951-1961 NN denotes alteration
T7402 1962-1964 PRP denotes it
T7403 1968-1976 JJ denotes unlikely
T7404 1977-1979 TO denotes to
T7405 1980-1986 VB denotes effect
T7406 1987-1990 DT denotes the
T7407 1991-2001 NN denotes expression
T7408 2002-2004 CC denotes or
T7409 2005-2013 NN denotes splicing
T7410 2014-2016 IN denotes of
T7411 2017-2022 NN denotes ITPR1
T7412 2022-2023 . denotes .
R1014 T7037 T7038 nsubj We,obtained
R1015 T7039 T7040 amod genomic,DNA
R1017 T7040 T7038 dobj DNA,obtained
R1018 T7041 T7038 prep from,obtained
R1019 T7042 T7043 nummod three,members
R1021 T7043 T7041 pobj members,from
R1022 T7044 T7043 amod affected,members
R1023 T7045 T7043 compound family,members
R1024 T7046 T7043 cc and,members
R1025 T7047 T7048 nummod one,member
R1026 T7048 T7043 conj member,members
R1028 T7049 T7048 compound family,member
R1029 T7050 T7048 prep with,member
R1030 T7051 T7052 amod unknown,status
R1032 T7052 T7050 pobj status,with
R1033 T7053 T7052 compound disease,status
R1034 T7054 T7043 prep from,members
R1036 T7055 T7056 det the,kindred
R1037 T7056 T7054 pobj kindred,from
R1039 T7057 T7058 advmod originally,used
R1040 T7058 T7056 acl used,kindred
R1041 T7059 T7060 aux to,define
R1043 T7060 T7058 advcl define,used
R1044 T7061 T7060 cc and,define
R1045 T7062 T7060 conj map,define
R1047 T7063 T7062 dobj SCA15,map
R1048 T7064 T7065 punct (,AUS1
R1049 T7065 T7063 parataxis AUS1,SCA15
R1051 T7066 T7065 compound family,AUS1
R1052 T7067 T7065 punct ", ",AUS1
R1053 T7068 T7065 prep of,AUS1
R1055 T7069 T7070 amod Australian,origin
R1056 T7070 T7068 pobj origin,of
R1057 T7071 T7072 advmod Anglo,Celtic
R1059 T7072 T7070 amod Celtic,origin
R1060 T7073 T7072 punct -,Celtic
R1061 T7074 T7065 punct ),AUS1
R1063 T7075 T7076 punct [,2
R1064 T7076 T7038 parataxis 2,obtained
R1065 T7077 T7076 punct ],2
R1067 T7078 T7038 punct .,obtained
R1069 T7080 T7081 nsubj We,performed
R1070 T7082 T7083 nummod two,experiments
R1072 T7083 T7081 dative experiments,performed
R1073 T7084 T7081 advmod concurrently,performed
R1074 T7085 T7081 prep in,performed
R1075 T7086 T7087 nummod three,members
R1076 T7087 T7085 pobj members,in
R1077 T7088 T7087 amod affected,members
R1079 T7089 T7087 prep of,members
R1080 T7090 T7091 det this,family
R1081 T7091 T7089 pobj family,of
R1083 T7092 T7081 punct : ,performed
R1084 T7093 T7094 compound sequence,analysis
R1085 T7094 T7081 dobj analysis,performed
R1087 T7095 T7094 prep of,analysis
R1088 T7096 T7097 det the,exons
R1089 T7097 T7095 pobj exons,of
R1090 T7098 T7097 amod coding,exons
R1092 T7099 T7097 prep of,exons
R1093 T7100 T7099 pobj ITPR1,of
R1094 T7101 T7094 cc and,analysis
R1095 T7102 T7103 amod high,density
R1098 T7103 T7105 nmod density,genotyping
R1099 T7104 T7103 punct -,density
R1101 T7105 T7094 conj genotyping,analysis
R1102 T7106 T7105 nmod genome,genotyping
R1106 T7107 T7106 punct -,genome
R1107 T7108 T7106 amod wide,genome
R1108 T7109 T7105 compound SNP,genotyping
R1110 T7110 T7081 punct .,performed
R1112 T7112 T7113 compound Sequence,analysis
R1113 T7113 T7114 nsubj analysis,failed
R1114 T7213 T7212 compound affection,status
R1115 T7115 T7116 aux to,show
R1116 T7116 T7114 xcomp show,failed
R1117 T7117 T7118 det any,alterations
R1118 T7118 T7116 dobj alterations,show
R1119 T7214 T7215 punct (,Figure
R1120 T7119 T7118 compound coding,alterations
R1121 T7120 T7118 acl segregating,alterations
R1122 T7121 T7120 prep with,segregating
R1123 T7215 T7195 parataxis Figure,was
R1124 T7122 T7121 pobj disease,with
R1125 T7123 T7122 cc or,disease
R1126 T7124 T7125 det any,alterations
R1127 T7125 T7122 conj alterations,disease
R1128 T7126 T7127 dep that,were
R1129 T7216 T7215 nummod 3,Figure
R1130 T7127 T7125 relcl were,alterations
R1131 T7128 T7127 acomp inconsistent,were
R1132 T7129 T7128 prep with,inconsistent
R1133 T7217 T7215 punct ),Figure
R1134 T7130 T7131 amod Mendelian,patterns
R1135 T7131 T7129 pobj patterns,with
R1136 T7132 T7131 prep of,patterns
R1137 T7218 T7195 punct .,was
R1138 T7133 T7132 pobj inheritance,of
R1139 T7134 T7131 prep within,patterns
R1140 T7135 T7136 det the,family
R1141 T7220 T7221 det The,data
R1142 T7136 T7134 pobj family,within
R1143 T7137 T7114 punct .,failed
R1144 T7139 T7140 advmod However,showed
R1145 T7221 T7223 nsubj data,showed
R1146 T7141 T7140 punct ", ",showed
R1147 T7222 T7221 compound SNP,data
R1148 T7142 T7140 nsubj visualization,showed
R1149 T7143 T7142 prep of,visualization
R1150 T7144 T7145 compound log,R
R1151 T7223 T7224 ccomp showed,allowed
R1152 T7145 T7146 compound R,ratio
R1153 T7146 T7143 pobj ratio,of
R1154 T7147 T7146 cc and,ratio
R1155 T7225 T7226 det a,deletion
R1156 T7148 T7149 compound B,allele
R1157 T7149 T7150 compound allele,metrics
R1158 T7150 T7146 conj metrics,ratio
R1159 T7226 T7223 dobj deletion,showed
R1160 T7151 T7150 compound frequency,metrics
R1161 T7152 T7150 prep from,metrics
R1162 T7153 T7154 det the,experiments
R1163 T7227 T7226 prep of,deletion
R1164 T7154 T7152 pobj experiments,from
R1165 T7155 T7156 npadvmod genome,wide
R1166 T7156 T7154 amod wide,experiments
R1167 T7228 T7227 prep between,of
R1168 T7157 T7156 punct -,wide
R1169 T7158 T7154 compound SNP,experiments
R1170 T7159 T7154 compound genotyping,experiments
R1171 T7229 T7230 nummod 188,kb
R1172 T7160 T7140 advmod clearly,showed
R1173 T7161 T7140 dobj data,showed
R1174 T7230 T7228 pobj kb,between
R1175 T7162 T7161 amod consistent,data
R1176 T7163 T7162 prep with,consistent
R1177 T7164 T7165 det a,deletion
R1178 T7165 T7163 pobj deletion,with
R1179 T7166 T7165 amod heterozygous,deletion
R1180 T7167 T7165 amod genomic,deletion
R1181 T7231 T7230 cc and,kb
R1182 T7168 T7165 prep across,deletion
R1183 T7169 T7170 det the,third
R1184 T7170 T7168 pobj third,across
R1185 T7171 T7170 amod first,third
R1186 T7232 T7233 nummod 210,kb
R1187 T7172 T7170 nummod one,third
R1188 T7173 T7170 punct -,third
R1189 T7174 T7170 prep of,third
R1190 T7233 T7230 conj kb,kb
R1191 T7175 T7174 pobj ITPR1,of
R1192 T7176 T7168 cc and,across
R1193 T7177 T7168 conj across,across
R1194 T7234 T7230 prep in,kb
R1195 T7178 T7179 det the,half
R1196 T7179 T7177 pobj half,across
R1197 T7180 T7179 amod first,half
R1198 T7235 T7234 pobj size,in
R1199 T7181 T7179 prep of,half
R1200 T7182 T7183 det a,gene
R1201 T7183 T7181 pobj gene,of
R1202 T7236 T7224 punct ;,allowed
R1203 T7184 T7183 amod neighboring,gene
R1204 T7185 T7183 punct ", ",gene
R1205 T7186 T7183 appos SUMF1,gene
R1206 T7237 T7224 nsubj examination,allowed
R1207 T7187 T7188 punct (,Figure
R1208 T7238 T7237 prep of,examination
R1209 T7239 T7238 pobj SNPs,of
R1210 T7188 T7140 parataxis Figure,showed
R1211 T7240 T7239 prep at,SNPs
R1212 T7189 T7188 nummod 2,Figure
R1213 T7190 T7188 punct ),Figure
R1214 T7191 T7140 punct .,showed
R1215 T7241 T7242 det the,regions
R1216 T7193 T7194 det This,deletion
R1217 T7242 T7240 pobj regions,at
R1218 T7194 T7195 nsubj deletion,was
R1219 T7243 T7242 amod flanking,regions
R1220 T7196 T7195 acomp apparent,was
R1221 T7197 T7196 prep in,apparent
R1222 T7244 T7242 amod unknown,regions
R1223 T7198 T7199 det all,members
R1224 T7245 T7242 prep of,regions
R1225 T7199 T7197 pobj members,in
R1226 T7200 T7199 nummod three,members
R1227 T7201 T7199 amod affected,members
R1228 T7246 T7247 det this,deletion
R1229 T7202 T7199 compound family,members
R1230 T7203 T7199 acl studied,members
R1231 T7204 T7196 cc and,apparent
R1232 T7205 T7196 conj absent,apparent
R1233 T7206 T7205 prep from,absent
R1234 T7207 T7208 det the,member
R1235 T7247 T7245 pobj deletion,of
R1236 T7208 T7206 pobj member,from
R1237 T7209 T7208 compound family,member
R1238 T7248 T7249 nsubj us,delimit
R1239 T7210 T7208 prep with,member
R1240 T7211 T7212 amod unknown,status
R1241 T7212 T7210 pobj status,with
R1242 T7249 T7224 ccomp delimit,allowed
R1243 T7250 T7249 aux to,delimit
R1244 T7251 T7252 det the,borders
R1245 T7252 T7249 dobj borders,delimit
R1246 T7253 T7252 prep of,borders
R1247 T7319 T7317 compound genotyping,chip
R1248 T7254 T7255 det the,deletion
R1249 T7320 T7317 punct ", ",chip
R1250 T7321 T7317 prep from,chip
R1251 T7255 T7253 pobj deletion,of
R1252 T7322 T7323 nummod 577,individuals
R1253 T7323 T7321 pobj individuals,from
R1254 T7256 T7249 prep to,delimit
R1255 T7324 T7323 prep of,individuals
R1256 T7325 T7326 amod European,descent
R1257 T7326 T7324 pobj descent,of
R1258 T7257 T7258 nummod 7.5,kb
R1259 T7327 T7328 dep who,were
R1260 T7328 T7323 relcl were,individuals
R1261 T7329 T7330 preconj either,controls
R1262 T7258 T7256 pobj kb,to
R1263 T7330 T7328 attr controls,were
R1264 T7331 T7330 cc or,controls
R1265 T7332 T7330 conj individuals,controls
R1266 T7259 T7258 prep on,kb
R1267 T7333 T7332 prep with,individuals
R1268 T7334 T7335 det an,disorder
R1269 T7260 T7261 det the,side
R1270 T7335 T7333 pobj disorder,with
R1271 T7336 T7335 amod unrelated,disorder
R1272 T7337 T7335 amod neurological,disorder
R1273 T7261 T7259 pobj side,on
R1274 T7338 T7292 punct .,analyzed
R1275 T7262 T7261 amod telomeric,side
R1276 T7340 T7341 nsubj We,failed
R1277 T7341 T7342 ccomp failed,identify
R1278 T7263 T7261 prep of,side
R1279 T7343 T7344 aux to,find
R1280 T7344 T7341 xcomp find,failed
R1281 T7345 T7346 det any,deletions
R1282 T7346 T7344 dobj deletions,find
R1283 T7347 T7346 acl affecting,deletions
R1284 T7264 T7265 det the,deletion
R1285 T7348 T7349 det the,sequence
R1286 T7349 T7347 dobj sequence,affecting
R1287 T7350 T7349 compound coding,sequence
R1288 T7265 T7263 pobj deletion,of
R1289 T7351 T7349 prep of,sequence
R1290 T7352 T7353 det either,gene
R1291 T7353 T7351 pobj gene,of
R1292 T7266 T7261 punct (,side
R1293 T7354 T7353 punct ", ",gene
R1294 T7355 T7353 appos ITPR1,gene
R1295 T7356 T7355 cc or,ITPR1
R1296 T7267 T7261 prep between,side
R1297 T7357 T7355 conj SUMF1,ITPR1
R1298 T7268 T7267 pobj rs12634249,between
R1299 T7358 T7342 punct ;,identify
R1300 T7269 T7268 cc and,rs12634249
R1301 T7359 T7342 nsubj we,identify
R1302 T7360 T7342 aux did,identify
R1303 T7361 T7342 punct ", ",identify
R1304 T7270 T7268 conj rs793396,rs12634249
R1305 T7362 T7342 advmod however,identify
R1306 T7363 T7342 punct ", ",identify
R1307 T7364 T7365 det a,individual
R1308 T7271 T7261 punct ),side
R1309 T7365 T7342 dobj individual,identify
R1310 T7366 T7365 amod single,individual
R1311 T7272 T7258 cc and,kb
R1312 T7367 T7365 prep with,individual
R1313 T7368 T7369 det a,deletion
R1314 T7273 T7274 punct ~,14.4
R1315 T7369 T7367 pobj deletion,with
R1316 T7370 T7369 amod possible,deletion
R1317 T7371 T7369 amod heterozygous,deletion
R1318 T7274 T7275 nummod 14.4,kb
R1319 T7372 T7373 advmod approximately,6
R1320 T7373 T7374 nummod 6,kb
R1321 T7374 T7369 npadvmod kb,deletion
R1322 T7275 T7258 conj kb,kb
R1323 T7375 T7374 prep in,kb
R1324 T7376 T7375 pobj size,in
R1325 T7377 T7369 prep within,deletion
R1326 T7276 T7275 prep on,kb
R1327 T7378 T7379 nmod intron,40
R1328 T7379 T7377 pobj 40,within
R1329 T7277 T7278 det the,side
R1330 T7380 T7381 punct –,41
R1331 T7381 T7379 prep 41,40
R1332 T7382 T7379 prep of,40
R1333 T7383 T7382 pobj ITPR1,of
R1334 T7384 T7379 punct ", ",40
R1335 T7385 T7386 advmod at,5
R1336 T7278 T7276 pobj side,on
R1337 T7386 T7388 nummod 5,kb
R1338 T7387 T7386 advmod least,5
R1339 T7388 T7389 npadvmod kb,away
R1340 T7279 T7278 amod centromeric,side
R1341 T7389 T7379 advmod away,40
R1342 T7390 T7389 prep from,away
R1343 T7391 T7390 pobj exon,from
R1344 T7280 T7278 prep of,side
R1345 T7392 T7391 nummod 40,exon
R1346 T7393 T7342 punct .,identify
R1347 T7281 T7282 det the,deletion
R1348 T7395 T7396 prep Given,is
R1349 T7282 T7280 pobj deletion,of
R1350 T7397 T7398 det the,location
R1351 T7398 T7395 pobj location,Given
R1352 T7283 T7278 punct (,side
R1353 T7399 T7398 prep of,location
R1354 T7400 T7401 det this,alteration
R1355 T7401 T7399 pobj alteration,of
R1356 T7284 T7278 prep between,side
R1357 T7402 T7396 nsubj it,is
R1358 T7403 T7396 acomp unlikely,is
R1359 T7404 T7405 aux to,effect
R1360 T7285 T7284 pobj rs4073665,between
R1361 T7405 T7403 xcomp effect,unlikely
R1362 T7406 T7407 det the,expression
R1363 T7407 T7405 dobj expression,effect
R1364 T7286 T7285 cc and,rs4073665
R1365 T7408 T7407 cc or,expression
R1366 T7409 T7407 conj splicing,expression
R1367 T7410 T7407 prep of,expression
R1368 T7287 T7285 conj rs17709863,rs4073665
R1369 T7411 T7410 pobj ITPR1,of
R1370 T7412 T7396 punct .,is
R1371 T7288 T7278 punct ),side
R1373 T7289 T7224 punct .,allowed
R1376 T7291 T7292 prep In,analyzed
R1381 T7293 T7294 det an,attempt
R1386 T7294 T7291 pobj attempt,In
R1387 T7295 T7296 aux to,define
R1389 T7296 T7294 acl define,attempt
R1392 T7297 T7298 mark whether,was
R1396 T7298 T7296 ccomp was,define
R1399 T7299 T7300 det this,variation
R1404 T7300 T7298 nsubj variation,was
R1407 T7301 T7302 det a,polymorphism
R1411 T7302 T7298 attr polymorphism,was
R1412 T7303 T7302 amod benign,polymorphism
R1415 T7304 T7292 nsubj we,analyzed
R1418 T7305 T7306 npadvmod genome,wide
R1422 T7306 T7308 amod wide,data
R1425 T7307 T7306 punct -,wide
R1427 T7308 T7292 dobj data,analyzed
R1429 T7309 T7308 compound SNP,data
R1433 T7310 T7308 prep at,data
R1436 T7311 T7312 det this,locus
R1443 T7312 T7310 pobj locus,at
R1447 T7313 T7308 punct ", ",data
R1451 T7314 T7308 acl produced,data
R1454 T7315 T7314 advcl using,produced
R1457 T7316 T7317 det the,chip
R1459 T7317 T7315 dobj chip,using
R1463 T7318 T7317 amod same,chip

2_test

Id Subject Object Predicate Lexical cue
17590087-12828938-85657850 216-217 12828938 denotes 2
T42593 216-217 12828938 denotes 2

PubTator4TogoVar

Id Subject Object Predicate Lexical cue resolved_to
5183 1273-1281 SNP denotes rs793396 tmVar:rs793396;VariantGroup:4;OriginalGene:58911;CorrespondingGene:285362;RS#:793396;CorrespondingSpecies:10090
5184 1359-1369 SNP denotes rs17709863 tmVar:rs17709863;VariantGroup:0;OriginalGene:16438;CorrespondingGene:3708;RS#:17709863;CorrespondingSpecies:10090
5185 1258-1268 SNP denotes rs12634249 tmVar:rs12634249;VariantGroup:2;OriginalGene:58911;CorrespondingGene:285362;RS#:12634249;CorrespondingSpecies:10090
5186 1345-1354 SNP denotes rs4073665 tmVar:rs4073665;VariantGroup:3;OriginalGene:16438;CorrespondingGene:3708;RS#:4073665;CorrespondingSpecies:10090

PubTatorOnTogoVar

Id Subject Object Predicate Lexical cue resolved_to
4736 1273-1281 SNP denotes rs793396 tmVar:rs793396;VariantGroup:4;OriginalGene:58911;CorrespondingGene:285362;RS#:793396;CorrespondingSpecies:10090
4737 1345-1354 SNP denotes rs4073665 tmVar:rs4073665;VariantGroup:3;CorrespondingGene:3708;RS#:4073665;CorrespondingSpecies:9606
4738 1359-1369 SNP denotes rs17709863 tmVar:rs17709863;VariantGroup:0;CorrespondingGene:3708;RS#:17709863;CorrespondingSpecies:9606
4739 1258-1268 SNP denotes rs12634249 tmVar:rs12634249;VariantGroup:2;OriginalGene:58911;CorrespondingGene:285362;RS#:12634249;CorrespondingSpecies:10090
T1 1273-1281 SNP denotes rs793396 tmVar:rs793396;VariantGroup:4;OriginalGene:58911;CorrespondingGene:285362;RS#:793396;CorrespondingSpecies:10090
T2 1345-1354 SNP denotes rs4073665 tmVar:rs4073665;VariantGroup:3;CorrespondingGene:3708;RS#:4073665;CorrespondingSpecies:9606
T3 1359-1369 SNP denotes rs17709863 tmVar:rs17709863;VariantGroup:0;CorrespondingGene:3708;RS#:17709863;CorrespondingSpecies:9606
T4 1258-1268 SNP denotes rs12634249 tmVar:rs12634249;VariantGroup:2;OriginalGene:58911;CorrespondingGene:285362;RS#:12634249;CorrespondingSpecies:10090