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PMC:1892049 / 576-864 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T843 35-40 PR_EXT:000009158 denotes Itpr1
T844 41-49 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T845 53-57 NCBITaxon:10088 denotes mice
T846 125-133 SO:0001817 denotes in-frame
T847 134-142 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T848 150-155 PR_EXT:000009158 denotes Itpr1
T849 206-211 PR_EXT:000009158 denotes Itpr1
T850 212-222 GO:0010467 denotes expression
T851 226-236 UBERON:0002037 denotes cerebellar
T852 226-251 CL:0000121 denotes cerebellar Purkinje cells
T853 246-251 CL_GO_EXT:cell denotes cells
T854 253-268 UBERON:0014643 denotes Spinocerebellar

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T801 35-40 PR:000009158 denotes Itpr1
T802 53-57 NCBITaxon:10088 denotes mice
T803 125-133 SO:0001817 denotes in-frame
T804 150-155 PR:000009158 denotes Itpr1
T805 206-211 PR:000009158 denotes Itpr1
T806 212-222 GO:0010467 denotes expression
T807 226-236 UBERON:0002037 denotes cerebellar
T808 226-251 CL:0000121 denotes cerebellar Purkinje cells
T809 253-268 UBERON:0014643 denotes Spinocerebellar

craft-sa-dev

Id Subject Object Predicate Lexical cue
T978 0-109 sentence denotes A previously reported spontaneous Itpr1 mutation in mice causes a phenotype identical to that observed here.
T979 1-2 DT denotes A
T980 41-49 NN denotes mutation
T981 3-13 RB denotes previously
T982 14-22 VBN denotes reported
T983 23-34 JJ denotes spontaneous
T984 35-40 NN denotes Itpr1
T985 58-64 VBZ denotes causes
T986 50-52 IN denotes in
T987 53-57 NNS denotes mice
T988 65-66 DT denotes a
T989 67-76 NN denotes phenotype
T990 77-86 JJ denotes identical
T991 87-89 IN denotes to
T992 90-94 DT denotes that
T993 95-103 VBN denotes observed
T994 104-108 RB denotes here
T995 108-109 . denotes .
T996 109-252 sentence denotes In both models in-frame deletion within Itpr1 leads to a decrease in the normally high level of Itpr1 expression in cerebellar Purkinje cells.
T997 110-112 IN denotes In
T998 156-161 VBZ denotes leads
T999 113-117 DT denotes both
T1000 118-124 NNS denotes models
T1001 125-127 IN denotes in
T1002 128-133 NN denotes frame
T1003 127-128 HYPH denotes -
T1004 134-142 NN denotes deletion
T1005 143-149 IN denotes within
T1006 150-155 NN denotes Itpr1
T1007 162-164 IN denotes to
T1008 165-166 DT denotes a
T1009 167-175 NN denotes decrease
T1010 176-178 IN denotes in
T1011 179-182 DT denotes the
T1012 197-202 NN denotes level
T1013 183-191 RB denotes normally
T1014 192-196 JJ denotes high
T1015 203-205 IN denotes of
T1016 206-211 NN denotes Itpr1
T1017 212-222 NN denotes expression
T1018 223-225 IN denotes in
T1019 226-236 JJ denotes cerebellar
T1020 246-251 NNS denotes cells
T1021 237-245 NNP denotes Purkinje
T1022 251-252 . denotes .
T1024 253-268 JJ denotes Spinocerebellar
T1025 269-275 NN denotes ataxia
T1027 276-278 CD denotes 15
T1028 279-280 -LRB- denotes (
T1029 280-285 NN denotes SCA15
T1030 285-286 -RRB- denotes )
T1031 286-288 , denotes ,
R100 T979 T980 det A,mutation
R101 T980 T985 nsubj mutation,causes
R102 T981 T982 advmod previously,reported
R103 T982 T980 amod reported,mutation
R104 T983 T980 amod spontaneous,mutation
R105 T984 T980 compound Itpr1,mutation
R106 T986 T980 prep in,mutation
R107 T987 T986 pobj mice,in
R108 T988 T989 det a,phenotype
R109 T989 T985 dobj phenotype,causes
R110 T990 T989 amod identical,phenotype
R111 T991 T990 prep to,identical
R112 T992 T991 pobj that,to
R113 T993 T992 acl observed,that
R114 T994 T993 advmod here,observed
R115 T995 T985 punct .,causes
R116 T997 T998 prep In,leads
R117 T999 T1000 det both,models
R118 T1000 T997 pobj models,In
R119 T1001 T1002 nmod in,frame
R120 T1002 T1004 compound frame,deletion
R121 T1003 T1002 punct -,frame
R122 T1004 T998 nsubj deletion,leads
R123 T1005 T1004 prep within,deletion
R124 T1006 T1005 pobj Itpr1,within
R125 T1007 T998 prep to,leads
R126 T1008 T1009 det a,decrease
R127 T1009 T1007 pobj decrease,to
R128 T1010 T1009 prep in,decrease
R129 T1011 T1012 det the,level
R131 T1013 T1014 advmod normally,high
R132 T1014 T1012 amod high,level
R133 T1015 T1012 prep of,level
R134 T1016 T1017 compound Itpr1,expression
R135 T1017 T1015 pobj expression,of
R136 T1018 T1017 prep in,expression
R137 T1019 T1020 amod cerebellar,cells
R138 T1020 T1018 pobj cells,in
R139 T1021 T1020 compound Purkinje,cells
R140 T1022 T998 punct .,leads
R141 T1024 T1025 amod Spinocerebellar,ataxia
R144 T1027 T1025 nummod 15,ataxia
R145 T1028 T1025 punct (,ataxia
R146 T1029 T1025 appos SCA15,ataxia
R147 T1030 T1025 punct ),ataxia
R148 T1031 T1025 punct ", ",ataxia
R130 T1012 T1010 pobj level,in

Biotea

Id Subject Object Predicate Lexical cue
T511 269-275 http://purl.bioontology.org/ontology/OMIM/MTHU036349 denotes ataxia
T515 269-275 http://purl.obolibrary.org/obo/SYMP_0000005 denotes ataxia
T519 269-275 http://purl.bioontology.org/ontology/MEDDRA/10003591 denotes ataxia
T523 269-275 http://purl.bioontology.org/ontology/MEDLINEPLUS/C0004134 denotes ataxia
T527 269-275 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C26702 denotes ataxia
T531 269-275 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C146737 denotes ataxia
T535 269-275 http://purl.bioontology.org/ontology/SNOMEDCT/20262006 denotes ataxia
T539 269-275 http://purl.bioontology.org/ontology/MESH/D001259 denotes ataxia
T543 53-57 http://purl.obolibrary.org/obo/PR_O89094 denotes mice
T547 53-57 http://purl.obolibrary.org/obo/PR_000005054 denotes mice
T551 53-57 http://purl.bioontology.org/ontology/MESH/D051379 denotes mice
T555 53-57 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C14238 denotes mice
T558 253-278 http://purl.bioontology.org/ontology/MESH/C564685 denotes Spinocerebellar ataxia 15
T560 253-278 http://purl.bioontology.org/ontology/OMIM/606658 denotes Spinocerebellar ataxia 15
T561 280-285 http://purl.bioontology.org/ontology/OMIM/606658 denotes SCA15
T565 253-275 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C82341 denotes Spinocerebellar ataxia
T567 253-275 http://purl.bioontology.org/ontology/MEDDRA/10057660 denotes Spinocerebellar ataxia
T569 253-275 http://purl.bioontology.org/ontology/OMIM/MTHU004242 denotes Spinocerebellar ataxia
T571 253-275 http://purl.bioontology.org/ontology/SNOMEDCT/129609000 denotes Spinocerebellar ataxia
T576 95-103 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25599 denotes observed
T626 41-49 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16885 denotes mutation
T629 41-49 http://purl.bioontology.org/ontology/MESH/D009154 denotes mutation
T633 41-49 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45576 denotes mutation
T651 128-133 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C49963 denotes frame
T653 128-133 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C63552 denotes frame
T655 128-133 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C80261 denotes frame
T657 128-133 http://purl.bioontology.org/ontology/SNOMEDCT/257297007 denotes frame
T659 35-40 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C51556 denotes Itpr1
T660 150-155 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C51556 denotes Itpr1
T661 206-211 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C51556 denotes Itpr1
T662 280-285 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C51556 denotes SCA15
T670 35-40 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C24527 denotes Itpr1
T671 150-155 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C24527 denotes Itpr1
T672 206-211 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C24527 denotes Itpr1
T679 35-40 http://purl.obolibrary.org/obo/PR_000009158 denotes Itpr1
T680 150-155 http://purl.obolibrary.org/obo/PR_000009158 denotes Itpr1
T681 206-211 http://purl.obolibrary.org/obo/PR_000009158 denotes Itpr1
T706 14-22 http://purl.bioontology.org/ontology/SNOMEDCT/733985002 denotes reported
T707 14-22 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25375 denotes reported
T708 23-34 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48307 denotes spontaneous
T709 23-34 http://purl.bioontology.org/ontology/SNOMEDCT/5054005 denotes spontaneous
T710 67-76 http://purl.obolibrary.org/obo/OGMS_0000023 denotes phenotype
T711 67-76 http://purl.bioontology.org/ontology/SNOMEDCT/8116006 denotes phenotype
T712 67-76 http://purl.bioontology.org/ontology/MESH/D010641 denotes phenotype
T713 67-76 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16977 denotes phenotype
T714 77-86 http://purl.bioontology.org/ontology/SNOMEDCT/20323000 denotes identical
T715 77-86 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C49034 denotes identical
T716 118-124 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16866 denotes models
T717 167-175 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25640 denotes decrease
T718 167-175 http://purl.bioontology.org/ontology/SNOMEDCT/260370003 denotes decrease
T719 192-202 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C129474 denotes high level
T720 197-202 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C87192 denotes level
T721 197-202 http://purl.bioontology.org/ontology/SNOMEDCT/276625007 denotes level
T722 197-202 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25554 denotes level
T723 212-222 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C80488 denotes expression
T724 212-222 http://purl.bioontology.org/ontology/SNOMEDCT/706999006 denotes expression
T725 212-222 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C16608 denotes expression
T726 212-222 http://purl.bioontology.org/ontology/SNOMEDCT/10012005 denotes expression
T727 226-236 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12445 denotes cerebellar
T728 237-251 http://purl.bioontology.org/ontology/MESH/D011689 denotes Purkinje cells
T729 237-251 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C23585 denotes Purkinje cells
T730 237-251 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12651 denotes Purkinje cells
T731 246-251 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C48938 denotes cells
T732 246-251 http://purl.bioontology.org/ontology/NDFRT/N0000184307 denotes cells
T733 246-251 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C12508 denotes cells
T734 246-251 http://purl.bioontology.org/ontology/MESH/D002477 denotes cells
T491 134-142 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C61330 denotes deletion
T495 134-142 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C19296 denotes deletion
T499 134-142 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45583 denotes deletion
T503 134-142 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C45577 denotes deletion
T507 134-142 http://purl.bioontology.org/ontology/SNOMEDCT/737543005 denotes deletion