> top > docs > PMC:1892049 > spans > 25389-26600 > annotations

PMC:1892049 / 25389-26600 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12697 46-54 SO:0000357 denotes flanking
T12698 59-67 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T12699 105-112 SO_EXT:0000112 denotes primers
T12700 196-213 SO_EXT:0000239 denotes bordering regions
T12701 215-221 SO_EXT:0000112 denotes primer
T12702 222-230 SO_EXT:biological_sequence denotes sequence
T12703 286-292 SO_EXT:0000112 denotes primer
T12704 306-315 GO_SO_EXT:telomere_or_telomeric_region_or_telomeric_orientation denotes telomeric
T12705 316-331 SO_EXT:0000239 denotes flanking region
T12706 352-363 GO_SO_EXT:centromere_or_centromeric_region_or_centromeric_orientation denotes centromeric
T12707 364-379 SO_EXT:0000239 denotes flanking region
T12708 426-428 SO_EXT:0000028 denotes bp
T12709 478-489 SO_EXT:genomic_DNA denotes genomic DNA
T12710 486-489 CHEBI_SO_EXT:DNA denotes DNA
T12711 522-533 NCBITaxon:1 denotes individuals
T12712 565-568 CHEBI_EXT:37958 denotes Dye
T12713 631-638 _FRAGMENT denotes forward
T12714 651-658 SO_EXT:0000121 denotes primers
T12715 643-658 SO_EXT:0000132 denotes reverse primers
T12716 809-815 SO_EXT:0001026 denotes genome
T12717 862-874 SO_EXT:polymorphism denotes polymorphism
T12718 925-931 SO_EXT:0001026 denotes genome
T12719 957-964 SO_EXT:0001026 denotes genomic
T12720 965-973 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T12721 1019-1025 SO_EXT:0001023 denotes allele
T12722 1040-1046 SO_EXT:0001023 denotes allele
T12723 1164-1175 NCBITaxon:1 denotes individuals
T12724 1200-1209 SO_EXT:0001024 denotes haplotype
R3354 T12714 T12713 _lexicallyChainedTo primers,forward

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12629 46-54 SO:0000357 denotes flanking
T12630 105-112 SO:0000112 denotes primers
T12631 196-213 SO:0000239 denotes bordering regions
T12632 215-221 SO:0000112 denotes primer
T12633 286-292 SO:0000112 denotes primer
T12634 316-331 SO:0000239 denotes flanking region
T12635 364-379 SO:0000239 denotes flanking region
T12636 426-428 SO:0000028 denotes bp
T12637 478-485 SO:0001026 denotes genomic
T12638 522-533 NCBITaxon:1 denotes individuals
T12639 565-568 CHEBI:37958 denotes Dye
T12640 631-638 _FRAGMENT denotes forward
T12641 651-658 SO:0000121 denotes primers
T12642 643-658 SO:0000132 denotes reverse primers
T12643 809-815 SO:0001026 denotes genome
T12644 925-931 SO:0001026 denotes genome
T12645 957-964 SO:0001026 denotes genomic
T12646 1019-1025 SO:0001023 denotes allele
T12647 1040-1046 SO:0001023 denotes allele
T12648 1164-1175 NCBITaxon:1 denotes individuals
T12649 1200-1209 SO:0001024 denotes haplotype
R3353 T12641 T12640 _lexicallyChainedTo primers,forward

craft-sa-dev

Id Subject Object Predicate Lexical cue
T13030 0-2 IN denotes In
T13031 96-104 VBD denotes designed
T13032 3-5 DT denotes an
T13033 6-13 NN denotes attempt
T13034 14-16 TO denotes to
T13035 17-23 VB denotes narrow
T13036 24-27 DT denotes the
T13037 36-45 NNS denotes intervals
T13038 28-35 JJ denotes unknown
T13039 46-54 VBG denotes flanking
T13040 55-58 DT denotes the
T13041 59-67 NN denotes deletion
T13042 68-76 VBN denotes observed
T13043 77-79 IN denotes in
T13044 80-86 NN denotes family
T13045 87-91 NN denotes AUS1
T13046 91-93 , denotes ,
T13047 93-95 PRP denotes we
T13048 105-112 NNS denotes primers
T13049 113-116 IN denotes for
T13050 117-119 CD denotes 30
T13051 124-138 NNS denotes amplifications
T13052 120-123 NN denotes PCR
T13053 139-143 WDT denotes that
T13054 150-158 VB denotes generate
T13055 144-149 MD denotes would
T13056 159-170 VBG denotes overlapping
T13057 171-180 NNS denotes fragments
T13058 181-187 IN denotes across
T13059 188-191 DT denotes the
T13060 206-213 NNS denotes regions
T13061 192-195 CD denotes two
T13062 196-205 NN denotes bordering
T13063 214-215 -LRB- denotes (
T13064 222-230 NN denotes sequence
T13065 215-221 NN denotes primer
T13066 231-234 CC denotes and
T13067 235-245 NNS denotes conditions
T13068 246-255 JJ denotes available
T13069 256-260 IN denotes upon
T13070 261-268 NN denotes request
T13071 268-269 -RRB- denotes )
T13072 269-270 . denotes .
T13073 270-392 sentence denotes There were ten primer pairs in the telomeric flanking region and 20 pairs in the centromeric flanking region (Figure S3).
T13074 271-276 EX denotes There
T13075 277-281 VBD denotes were
T13076 282-285 CD denotes ten
T13077 293-298 NNS denotes pairs
T13078 286-292 NN denotes primer
T13079 299-301 IN denotes in
T13080 302-305 DT denotes the
T13081 325-331 NN denotes region
T13082 306-315 JJ denotes telomeric
T13083 316-324 NN denotes flanking
T13084 332-335 CC denotes and
T13085 336-338 CD denotes 20
T13086 339-344 NNS denotes pairs
T13087 345-347 IN denotes in
T13088 348-351 DT denotes the
T13089 373-379 NN denotes region
T13090 352-363 JJ denotes centromeric
T13091 364-372 NN denotes flanking
T13092 380-381 -LRB- denotes (
T13093 388-390 NN denotes S3
T13094 381-387 NN denotes Figure
T13095 390-391 -RRB- denotes )
T13096 391-392 . denotes .
T13097 392-564 sentence denotes On average each product was ~750 bp in size, and amplifications were performed using genomic DNA from each of the three affected individuals (family members 6, 7, and 19).
T13098 393-395 IN denotes On
T13099 417-420 VBD denotes was
T13100 396-403 JJ denotes average
T13101 404-408 DT denotes each
T13102 409-416 NN denotes product
T13103 421-422 SYM denotes ~
T13104 422-425 CD denotes 750
T13105 426-428 NN denotes bp
T13106 429-431 IN denotes in
T13107 432-436 NN denotes size
T13108 436-438 , denotes ,
T13109 438-441 CC denotes and
T13110 442-456 NNS denotes amplifications
T13111 462-471 VBN denotes performed
T13112 457-461 VBD denotes were
T13113 472-477 VBG denotes using
T13114 478-485 JJ denotes genomic
T13115 486-489 NN denotes DNA
T13116 490-494 IN denotes from
T13117 495-499 DT denotes each
T13118 500-502 IN denotes of
T13119 503-506 DT denotes the
T13120 522-533 NNS denotes individuals
T13121 507-512 CD denotes three
T13122 513-521 VBN denotes affected
T13123 534-535 -LRB- denotes (
T13124 550-551 CD denotes 6
T13125 535-541 NN denotes family
T13126 542-549 NNS denotes members
T13127 551-553 , denotes ,
T13128 553-554 CD denotes 7
T13129 554-556 , denotes ,
T13130 556-559 CC denotes and
T13131 560-562 CD denotes 19
T13132 562-563 -RRB- denotes )
T13133 563-564 . denotes .
T13134 564-758 sentence denotes Dye-terminator sequencing of each product was performed using the forward and reverse primers designed for amplification; running and analysis of each fragment was performed as described above.
T13135 565-568 NN denotes Dye
T13136 569-579 NN denotes terminator
T13137 568-569 HYPH denotes -
T13138 580-590 NN denotes sequencing
T13139 611-620 VBN denotes performed
T13140 591-593 IN denotes of
T13141 594-598 DT denotes each
T13142 599-606 NN denotes product
T13143 607-610 VBD denotes was
T13144 729-738 VBN denotes performed
T13145 621-626 VBG denotes using
T13146 627-630 DT denotes the
T13147 651-658 NNS denotes primers
T13148 631-638 JJ denotes forward
T13149 639-642 CC denotes and
T13150 643-650 JJ denotes reverse
T13151 659-667 VBN denotes designed
T13152 668-671 IN denotes for
T13153 672-685 NN denotes amplification
T13154 685-686 : denotes ;
T13155 687-694 VBG denotes running
T13156 699-707 NN denotes analysis
T13157 695-698 CC denotes and
T13158 708-710 IN denotes of
T13159 711-715 DT denotes each
T13160 716-724 NN denotes fragment
T13161 725-728 VBD denotes was
T13162 739-741 IN denotes as
T13163 742-751 VBN denotes described
T13164 752-757 RB denotes above
T13165 757-758 . denotes .
T13166 758-1211 sentence denotes Amplification of a fragment from a normal diploid genome was denoted by the presence of a heterozygous polymorphism; amplification of a fragment from a region of the genome harboring a heterozygous genomic deletion was inferred when homozygosity for the major allele and the minor allele were noted among the three affected family members (i.e., this is inconsistent with Mendelian inheritance in related individuals known to share a common haplotype).
T13167 759-772 NN denotes Amplification
T13168 820-827 VBN denotes denoted
T13169 773-775 IN denotes of
T13170 776-777 DT denotes a
T13171 778-786 NN denotes fragment
T13172 787-791 IN denotes from
T13173 792-793 DT denotes a
T13174 809-815 NN denotes genome
T13175 794-800 JJ denotes normal
T13176 801-808 JJ denotes diploid
T13177 816-819 VBD denotes was
T13178 978-986 VBN denotes inferred
T13179 828-830 IN denotes by
T13180 831-834 DT denotes the
T13181 835-843 NN denotes presence
T13182 844-846 IN denotes of
T13183 847-848 DT denotes a
T13184 862-874 NN denotes polymorphism
T13185 849-861 JJ denotes heterozygous
T13186 874-875 : denotes ;
T13187 876-889 NN denotes amplification
T13188 890-892 IN denotes of
T13189 893-894 DT denotes a
T13190 895-903 NN denotes fragment
T13191 904-908 IN denotes from
T13192 909-910 DT denotes a
T13193 911-917 NN denotes region
T13194 918-920 IN denotes of
T13195 921-924 DT denotes the
T13196 925-931 NN denotes genome
T13197 932-941 VBG denotes harboring
T13198 942-943 DT denotes a
T13199 965-973 NN denotes deletion
T13200 944-956 JJ denotes heterozygous
T13201 957-964 JJ denotes genomic
T13202 974-977 VBD denotes was
T13203 987-991 WRB denotes when
T13204 1052-1057 VBN denotes noted
T13205 992-1004 NN denotes homozygosity
T13206 1005-1008 IN denotes for
T13207 1009-1012 DT denotes the
T13208 1019-1025 NN denotes allele
T13209 1013-1018 JJ denotes major
T13210 1026-1029 CC denotes and
T13211 1030-1033 DT denotes the
T13212 1040-1046 NN denotes allele
T13213 1034-1039 JJ denotes minor
T13214 1047-1051 VBD denotes were
T13215 1058-1063 IN denotes among
T13216 1064-1067 DT denotes the
T13217 1090-1097 NNS denotes members
T13218 1068-1073 CD denotes three
T13219 1074-1082 VBN denotes affected
T13220 1083-1089 NN denotes family
T13221 1098-1099 -LRB- denotes (
T13222 1110-1112 VBZ denotes is
T13223 1099-1103 FW denotes i.e.
T13224 1103-1105 , denotes ,
T13225 1105-1109 DT denotes this
T13226 1113-1125 JJ denotes inconsistent
T13227 1126-1130 IN denotes with
T13228 1131-1140 JJ denotes Mendelian
T13229 1141-1152 NN denotes inheritance
T13230 1153-1155 IN denotes in
T13231 1156-1163 JJ denotes related
T13232 1164-1175 NNS denotes individuals
T13233 1176-1181 VBN denotes known
T13234 1182-1184 TO denotes to
T13235 1185-1190 VB denotes share
T13236 1191-1192 DT denotes a
T13237 1200-1209 NN denotes haplotype
T13238 1193-1199 JJ denotes common
T13239 1209-1210 -RRB- denotes )
T13240 1210-1211 . denotes .
R3606 T13030 T13031 prep In,designed
R3607 T13032 T13033 det an,attempt
R3608 T13033 T13030 pobj attempt,In
R3609 T13034 T13035 aux to,narrow
R3610 T13035 T13033 acl narrow,attempt
R3611 T13036 T13037 det the,intervals
R3612 T13037 T13035 dobj intervals,narrow
R3613 T13038 T13037 amod unknown,intervals
R3614 T13039 T13037 acl flanking,intervals
R3615 T13040 T13041 det the,deletion
R3616 T13041 T13039 dobj deletion,flanking
R3617 T13042 T13041 acl observed,deletion
R3618 T13043 T13042 prep in,observed
R3619 T13044 T13045 compound family,AUS1
R3620 T13045 T13043 pobj AUS1,in
R3621 T13046 T13031 punct ", ",designed
R3622 T13047 T13031 nsubj we,designed
R3623 T13048 T13031 dobj primers,designed
R3624 T13049 T13048 prep for,primers
R3625 T13050 T13051 nummod 30,amplifications
R3626 T13051 T13049 pobj amplifications,for
R3627 T13052 T13051 compound PCR,amplifications
R3628 T13053 T13054 dep that,generate
R3629 T13054 T13051 relcl generate,amplifications
R3630 T13055 T13054 aux would,generate
R3631 T13056 T13057 amod overlapping,fragments
R3632 T13057 T13054 dobj fragments,generate
R3633 T13058 T13054 prep across,generate
R3634 T13059 T13060 det the,regions
R3635 T13060 T13058 pobj regions,across
R3636 T13061 T13060 nummod two,regions
R3637 T13062 T13060 compound bordering,regions
R3638 T13063 T13064 punct (,sequence
R3639 T13064 T13060 parataxis sequence,regions
R3640 T13065 T13064 compound primer,sequence
R3641 T13066 T13064 cc and,sequence
R3642 T13067 T13064 conj conditions,sequence
R3643 T13068 T13064 amod available,sequence
R3644 T13069 T13068 prep upon,available
R3645 T13070 T13069 pobj request,upon
R3646 T13071 T13064 punct ),sequence
R3647 T13072 T13031 punct .,designed
R3648 T13074 T13075 expl There,were
R3649 T13076 T13077 nummod ten,pairs
R3650 T13077 T13075 attr pairs,were
R3651 T13078 T13077 compound primer,pairs
R3652 T13079 T13077 prep in,pairs
R3653 T13080 T13081 det the,region
R3654 T13081 T13079 pobj region,in
R3655 T13082 T13081 amod telomeric,region
R3656 T13083 T13081 compound flanking,region
R3657 T13084 T13077 cc and,pairs
R3658 T13085 T13086 nummod 20,pairs
R3659 T13086 T13077 conj pairs,pairs
R3660 T13087 T13086 prep in,pairs
R3661 T13088 T13089 det the,region
R3662 T13089 T13087 pobj region,in
R3663 T13090 T13089 amod centromeric,region
R3664 T13091 T13089 compound flanking,region
R3665 T13092 T13093 punct (,S3
R3666 T13093 T13075 parataxis S3,were
R3667 T13094 T13093 compound Figure,S3
R3668 T13095 T13093 punct ),S3
R3669 T13096 T13075 punct .,were
R3670 T13098 T13099 prep On,was
R3671 T13100 T13098 amod average,On
R3672 T13101 T13102 det each,product
R3673 T13102 T13099 nsubj product,was
R3674 T13103 T13104 punct ~,750
R3675 T13104 T13105 nummod 750,bp
R3676 T13105 T13099 attr bp,was
R3677 T13106 T13105 prep in,bp
R3678 T13107 T13106 pobj size,in
R3679 T13108 T13099 punct ", ",was
R3680 T13109 T13099 cc and,was
R3681 T13110 T13111 nsubjpass amplifications,performed
R3682 T13111 T13099 conj performed,was
R3683 T13112 T13111 auxpass were,performed
R3684 T13113 T13111 advcl using,performed
R3685 T13114 T13115 amod genomic,DNA
R3686 T13115 T13113 dobj DNA,using
R3687 T13116 T13113 prep from,using
R3688 T13117 T13116 pobj each,from
R3689 T13118 T13117 prep of,each
R3690 T13119 T13120 det the,individuals
R3691 T13120 T13118 pobj individuals,of
R3692 T13121 T13120 nummod three,individuals
R3693 T13122 T13120 amod affected,individuals
R3694 T13123 T13124 punct (,6
R3695 T13124 T13120 parataxis 6,individuals
R3696 T13125 T13124 nmod family,6
R3697 T13126 T13124 nmod members,6
R3698 T13127 T13124 punct ", ",6
R3699 T13128 T13124 conj 7,6
R3700 T13129 T13128 punct ", ",7
R3701 T13130 T13128 cc and,7
R3702 T13131 T13128 conj 19,7
R3703 T13132 T13124 punct ),6
R3704 T13133 T13111 punct .,performed
R3705 T13135 T13136 compound Dye,terminator
R3706 T13136 T13138 compound terminator,sequencing
R3707 T13137 T13136 punct -,terminator
R3708 T13138 T13139 nsubjpass sequencing,performed
R3709 T13139 T13144 ccomp performed,performed
R3710 T13140 T13138 prep of,sequencing
R3711 T13141 T13142 det each,product
R3712 T13142 T13140 pobj product,of
R3713 T13143 T13139 auxpass was,performed
R3714 T13145 T13139 advcl using,performed
R3715 T13146 T13147 det the,primers
R3716 T13147 T13145 dobj primers,using
R3717 T13148 T13147 amod forward,primers
R3718 T13149 T13148 cc and,forward
R3719 T13150 T13148 conj reverse,forward
R3720 T13151 T13147 acl designed,primers
R3721 T13152 T13151 prep for,designed
R3722 T13153 T13152 pobj amplification,for
R3723 T13154 T13144 punct ;,performed
R3724 T13155 T13156 amod running,analysis
R3725 T13156 T13144 nsubjpass analysis,performed
R3726 T13157 T13156 cc and,analysis
R3727 T13158 T13156 prep of,analysis
R3728 T13159 T13160 det each,fragment
R3729 T13160 T13158 pobj fragment,of
R3730 T13161 T13144 auxpass was,performed
R3731 T13162 T13163 mark as,described
R3732 T13163 T13144 advcl described,performed
R3733 T13164 T13163 advmod above,described
R3734 T13165 T13144 punct .,performed
R3735 T13167 T13168 nsubjpass Amplification,denoted
R3736 T13168 T13178 ccomp denoted,inferred
R3737 T13169 T13167 prep of,Amplification
R3738 T13170 T13171 det a,fragment
R3739 T13171 T13169 pobj fragment,of
R3740 T13172 T13171 prep from,fragment
R3741 T13173 T13174 det a,genome
R3742 T13174 T13172 pobj genome,from
R3743 T13175 T13174 amod normal,genome
R3744 T13176 T13174 amod diploid,genome
R3745 T13177 T13168 auxpass was,denoted
R3746 T13179 T13168 agent by,denoted
R3747 T13180 T13181 det the,presence
R3748 T13181 T13179 pobj presence,by
R3749 T13182 T13181 prep of,presence
R3750 T13183 T13184 det a,polymorphism
R3751 T13184 T13182 pobj polymorphism,of
R3752 T13185 T13184 amod heterozygous,polymorphism
R3753 T13186 T13178 punct ;,inferred
R3754 T13187 T13178 nsubjpass amplification,inferred
R3755 T13188 T13187 prep of,amplification
R3756 T13189 T13190 det a,fragment
R3757 T13190 T13188 pobj fragment,of
R3758 T13191 T13190 prep from,fragment
R3759 T13192 T13193 det a,region
R3760 T13193 T13191 pobj region,from
R3761 T13194 T13193 prep of,region
R3762 T13195 T13196 det the,genome
R3763 T13196 T13194 pobj genome,of
R3764 T13197 T13196 acl harboring,genome
R3765 T13198 T13199 det a,deletion
R3766 T13199 T13197 dobj deletion,harboring
R3767 T13200 T13199 amod heterozygous,deletion
R3768 T13201 T13199 amod genomic,deletion
R3769 T13202 T13178 auxpass was,inferred
R3770 T13203 T13204 advmod when,noted
R3771 T13204 T13178 advcl noted,inferred
R3772 T13205 T13204 nsubjpass homozygosity,noted
R3773 T13206 T13205 prep for,homozygosity
R3774 T13207 T13208 det the,allele
R3775 T13208 T13206 pobj allele,for
R3776 T13209 T13208 amod major,allele
R3777 T13210 T13208 cc and,allele
R3778 T13211 T13212 det the,allele
R3779 T13212 T13208 conj allele,allele
R3780 T13213 T13212 amod minor,allele
R3781 T13214 T13204 auxpass were,noted
R3782 T13215 T13204 prep among,noted
R3783 T13216 T13217 det the,members
R3784 T13217 T13215 pobj members,among
R3785 T13218 T13217 nummod three,members
R3786 T13219 T13217 amod affected,members
R3787 T13220 T13217 compound family,members
R3788 T13221 T13222 punct (,is
R3789 T13222 T13204 parataxis is,noted
R3790 T13223 T13222 advmod i.e.,is
R3791 T13224 T13222 punct ", ",is
R3792 T13225 T13222 nsubj this,is
R3793 T13226 T13222 acomp inconsistent,is
R3794 T13227 T13226 prep with,inconsistent
R3795 T13228 T13229 amod Mendelian,inheritance
R3796 T13229 T13227 pobj inheritance,with
R3797 T13230 T13229 prep in,inheritance
R3798 T13231 T13232 amod related,individuals
R3799 T13232 T13230 pobj individuals,in
R3800 T13233 T13232 acl known,individuals
R3801 T13234 T13235 aux to,share
R3802 T13235 T13233 xcomp share,known
R3803 T13236 T13237 det a,haplotype
R3804 T13237 T13235 dobj haplotype,share
R3805 T13238 T13237 amod common,haplotype
R3806 T13239 T13222 punct ),is
R3807 T13240 T13178 punct .,inferred