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PMC:1892049 / 20243-20787 JSONTXT

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craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9562 40-44 NCBITaxon:10088 denotes mice
T9563 129-134 PR_EXT:000009158 denotes Itpr1
T9564 142-147 NCBITaxon:10088 denotes mouse
T9565 190-198 SO_EXT:sequence_deletion_entity_or_process denotes deletion
T9566 199-207 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T9567 211-216 SO_EXT:0000147 denotes exons
T9568 230-235 PR_EXT:000009158 denotes Itpr1
T9569 237-243 SO_EXT:0000112 denotes Primer
T9570 288-300 SO_EXT:0000195 denotes coding exons
T9571 317-319 SO_EXT:0000028 denotes bp
T9572 328-336 _FRAGMENT denotes flanking
T9573 346-354 SO_EXT:0000239 denotes sequence
T9574 337-345 SO_EXT:0000188 denotes intronic
T9575 358-363 PR_EXT:000009158 denotes Itpr1
T9576 391-395 SO_EXT:0000147 denotes exon
T9577 416-419 CHEBI_SO_EXT:DNA denotes DNA
T9578 438-442 NCBITaxon:10088 denotes mice
T9579 461-466 PR_EXT:000009158 denotes Itpr1
T9580 474-482 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T9581 527-531 NCBITaxon:10088 denotes mice
R2708 T9573 T9572 _lexicallyChainedTo sequence,flanking

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T9532 40-44 NCBITaxon:10088 denotes mice
T9533 129-134 PR:000009158 denotes Itpr1
T9534 142-147 NCBITaxon:10088 denotes mouse
T9535 211-216 SO:0000147 denotes exons
T9536 230-235 PR:000009158 denotes Itpr1
T9537 237-243 SO:0000112 denotes Primer
T9538 288-300 SO:0000195 denotes coding exons
T9539 317-319 SO:0000028 denotes bp
T9540 328-336 _FRAGMENT denotes flanking
T9541 346-354 SO:0000239 denotes sequence
T9542 337-345 SO:0000188 denotes intronic
T9543 358-363 PR:000009158 denotes Itpr1
T9544 391-395 SO:0000147 denotes exon
T9545 438-442 NCBITaxon:10088 denotes mice
T9546 461-466 PR:000009158 denotes Itpr1
T9547 527-531 NCBITaxon:10088 denotes mice
R2707 T9541 T9540 _lexicallyChainedTo sequence,flanking

craft-sa-dev

Id Subject Object Predicate Lexical cue
T9612 0-14 NN denotes Identification
T9613 77-86 VBN denotes performed
T9614 15-17 IN denotes of
T9615 18-25 JJ denotes similar
T9616 26-36 NNS denotes phenotypes
T9617 37-39 IN denotes in
T9618 40-44 NNS denotes mice
T9619 45-51 VBN denotes linked
T9620 52-54 IN denotes to
T9621 55-58 DT denotes the
T9622 64-72 NN denotes interval
T9623 59-63 NN denotes 6qE1
T9624 73-76 VBD denotes was
T9625 87-89 IN denotes by
T9626 90-100 NN denotes literature
T9627 101-109 NNS denotes searches
T9628 109-110 . denotes .
T9629 110-236 sentence denotes This revealed the Itpr1opt/opt mouse, in which disease is caused by homozygous deletion mutation of exons 43 and 44 of Itpr1.
T9630 111-115 DT denotes This
T9631 116-124 VBD denotes revealed
T9632 125-128 DT denotes the
T9633 142-147 NN denotes mouse
T9634 129-137 NN denotes Itpr1opt
T9635 138-141 NN denotes opt
T9636 137-138 HYPH denotes /
T9637 147-149 , denotes ,
T9638 149-151 IN denotes in
T9639 169-175 VBN denotes caused
T9640 152-157 WDT denotes which
T9641 158-165 NN denotes disease
T9642 166-168 VBZ denotes is
T9643 176-178 IN denotes by
T9644 179-189 JJ denotes homozygous
T9645 199-207 NN denotes mutation
T9646 190-198 NN denotes deletion
T9647 208-210 IN denotes of
T9648 211-216 NNS denotes exons
T9649 217-219 CD denotes 43
T9650 220-223 CC denotes and
T9651 224-226 CD denotes 44
T9652 227-229 IN denotes of
T9653 230-235 NN denotes Itpr1
T9654 235-236 . denotes .
T9655 236-364 sentence denotes Primer pairs were designed to sequence each of the coding exons and at least 50 bp of each flanking intronic sequence of Itpr1.
T9656 237-243 NN denotes Primer
T9657 244-249 NNS denotes pairs
T9658 255-263 VBN denotes designed
T9659 250-254 VBD denotes were
T9660 264-266 TO denotes to
T9661 267-275 VB denotes sequence
T9662 276-280 DT denotes each
T9663 281-283 IN denotes of
T9664 284-287 DT denotes the
T9665 295-300 NNS denotes exons
T9666 288-294 NN denotes coding
T9667 301-304 CC denotes and
T9668 305-307 RB denotes at
T9669 314-316 CD denotes 50
T9670 308-313 RBS denotes least
T9671 317-319 NN denotes bp
T9672 320-322 IN denotes of
T9673 323-327 DT denotes each
T9674 346-354 NN denotes sequence
T9675 328-336 VBG denotes flanking
T9676 337-345 JJ denotes intronic
T9677 355-357 IN denotes of
T9678 358-363 NN denotes Itpr1
T9679 363-364 . denotes .
T9680 364-456 sentence denotes PCR amplification of each exon was performed using DNA from two affected mice as templates.
T9681 365-368 NN denotes PCR
T9682 369-382 NN denotes amplification
T9683 400-409 VBN denotes performed
T9684 383-385 IN denotes of
T9685 386-390 DT denotes each
T9686 391-395 NN denotes exon
T9687 396-399 VBD denotes was
T9688 410-415 VBG denotes using
T9689 416-419 NN denotes DNA
T9690 420-424 IN denotes from
T9691 425-428 CD denotes two
T9692 438-442 NNS denotes mice
T9693 429-437 VBN denotes affected
T9694 443-445 IN denotes as
T9695 446-455 NNS denotes templates
T9696 455-456 . denotes .
T9697 456-544 sentence denotes The Itpr1Δ18/Δ18 mutation was confirmed by sequencing in all affected mice (Figure S2).
T9698 457-460 DT denotes The
T9699 474-482 NN denotes mutation
T9700 461-469 NN denotes Itpr1Δ18
T9701 470-473 NN denotes Δ18
T9702 469-470 HYPH denotes /
T9703 487-496 VBN denotes confirmed
T9704 483-486 VBD denotes was
T9705 497-499 IN denotes by
T9706 500-510 NN denotes sequencing
T9707 511-513 IN denotes in
T9708 514-517 DT denotes all
T9709 527-531 NNS denotes mice
T9710 518-526 VBN denotes affected
T9711 532-533 -LRB- denotes (
T9712 540-542 NN denotes S2
T9713 533-539 NN denotes Figure
T9714 542-543 -RRB- denotes )
T9715 543-544 . denotes .
R2717 T9612 T9613 nsubjpass Identification,performed
R2718 T9614 T9612 prep of,Identification
R2719 T9615 T9616 amod similar,phenotypes
R2720 T9616 T9614 pobj phenotypes,of
R2721 T9617 T9616 prep in,phenotypes
R2722 T9618 T9617 pobj mice,in
R2723 T9619 T9618 acl linked,mice
R2724 T9620 T9619 prep to,linked
R2725 T9621 T9622 det the,interval
R2726 T9622 T9620 pobj interval,to
R2727 T9623 T9622 compound 6qE1,interval
R2728 T9624 T9613 auxpass was,performed
R2729 T9625 T9613 prep by,performed
R2730 T9626 T9627 compound literature,searches
R2731 T9627 T9625 pobj searches,by
R2732 T9628 T9613 punct .,performed
R2733 T9630 T9631 nsubj This,revealed
R2734 T9632 T9633 det the,mouse
R2735 T9633 T9631 dobj mouse,revealed
R2736 T9634 T9635 compound Itpr1opt,opt
R2737 T9635 T9633 compound opt,mouse
R2738 T9636 T9635 punct /,opt
R2739 T9637 T9633 punct ", ",mouse
R2740 T9638 T9639 prep in,caused
R2741 T9639 T9633 relcl caused,mouse
R2742 T9640 T9638 pobj which,in
R2743 T9641 T9639 nsubjpass disease,caused
R2744 T9642 T9639 auxpass is,caused
R2745 T9643 T9639 agent by,caused
R2746 T9644 T9645 amod homozygous,mutation
R2747 T9645 T9643 pobj mutation,by
R2748 T9646 T9645 compound deletion,mutation
R2749 T9647 T9645 prep of,mutation
R2750 T9648 T9649 nmod exons,43
R2751 T9649 T9647 pobj 43,of
R2752 T9650 T9649 cc and,43
R2753 T9651 T9649 conj 44,43
R2754 T9652 T9649 prep of,43
R2755 T9653 T9652 pobj Itpr1,of
R2756 T9654 T9631 punct .,revealed
R2757 T9656 T9657 compound Primer,pairs
R2758 T9657 T9658 nsubjpass pairs,designed
R2759 T9659 T9658 auxpass were,designed
R2760 T9660 T9661 aux to,sequence
R2761 T9661 T9658 advcl sequence,designed
R2762 T9662 T9661 dobj each,sequence
R2763 T9663 T9662 prep of,each
R2764 T9664 T9665 det the,exons
R2765 T9665 T9663 pobj exons,of
R2766 T9666 T9665 compound coding,exons
R2767 T9667 T9662 cc and,each
R2768 T9668 T9669 advmod at,50
R2769 T9669 T9671 nummod 50,bp
R2770 T9670 T9669 advmod least,50
R2771 T9671 T9662 conj bp,each
R2772 T9672 T9671 prep of,bp
R2773 T9673 T9674 det each,sequence
R2774 T9674 T9672 pobj sequence,of
R2775 T9675 T9674 amod flanking,sequence
R2776 T9676 T9674 amod intronic,sequence
R2777 T9677 T9662 prep of,each
R2778 T9678 T9677 pobj Itpr1,of
R2779 T9679 T9658 punct .,designed
R2780 T9681 T9682 compound PCR,amplification
R2781 T9682 T9683 nsubjpass amplification,performed
R2782 T9684 T9682 prep of,amplification
R2783 T9685 T9686 det each,exon
R2784 T9686 T9684 pobj exon,of
R2785 T9687 T9683 auxpass was,performed
R2786 T9688 T9683 advcl using,performed
R2787 T9689 T9688 dobj DNA,using
R2788 T9690 T9689 prep from,DNA
R2789 T9691 T9692 nummod two,mice
R2790 T9692 T9690 pobj mice,from
R2791 T9693 T9692 amod affected,mice
R2792 T9694 T9688 prep as,using
R2793 T9695 T9694 pobj templates,as
R2794 T9696 T9683 punct .,performed
R2795 T9698 T9699 det The,mutation
R2796 T9699 T9703 nsubjpass mutation,confirmed
R2797 T9700 T9701 compound Itpr1Δ18,Δ18
R2798 T9701 T9699 compound Δ18,mutation
R2799 T9702 T9701 punct /,Δ18
R2800 T9704 T9703 auxpass was,confirmed
R2801 T9705 T9703 prep by,confirmed
R2802 T9706 T9705 pobj sequencing,by
R2803 T9707 T9703 prep in,confirmed
R2804 T9708 T9709 det all,mice
R2805 T9709 T9707 pobj mice,in
R2806 T9710 T9709 amod affected,mice
R2807 T9711 T9712 punct (,S2
R2808 T9712 T9703 parataxis S2,confirmed
R2809 T9713 T9712 compound Figure,S2
R2810 T9714 T9712 punct ),S2
R2811 T9715 T9703 punct .,confirmed