> top > docs > PMC:1892049 > spans > 19189-20184 > annotations

PMC:1892049 / 19189-20184 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8952 0-6 SO_EXT:0001026 denotes Genome
T8953 23-27 NCBITaxon:10088 denotes mice
T8954 52-55 CHEBI_SO_EXT:DNA denotes DNA
T8955 92-98 SO_EXT:0001026 denotes genome
T8956 153-157 SO_EXT:0000694 denotes SNPs
T8957 288-292 NCBITaxon:10088 denotes mice
T8958 313-317 NCBITaxon:10088 denotes mice
T8959 319-327 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T8960 353-356 CHEBI_EXT:37958 denotes dye
T8961 502-512 GO_SO_EXT:chromosome denotes Chromosome
T8962 576-582 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T8963 741-745 NCBITaxon:10088 denotes mice
T8964 774-778 NCBITaxon:10088 denotes mice
T8965 828-836 SO:0000357 denotes flanking
T8966 837-849 SO_EXT:sequence_recombinant_entity denotes recombinants
T8967 880-881 CHEBI_SO_EXT:base denotes b
T8968 891-898 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T8969 963-968 SO_EXT:0000704 denotes genes
T8970 973-994 SO_EXT:0002138 denotes predicted transcripts

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8940 0-6 SO:0001026 denotes Genome
T8941 23-27 NCBITaxon:10088 denotes mice
T8942 92-98 SO:0001026 denotes genome
T8943 153-157 SO:0000694 denotes SNPs
T8944 288-292 NCBITaxon:10088 denotes mice
T8945 313-317 NCBITaxon:10088 denotes mice
T8946 353-356 CHEBI:37958 denotes dye
T8947 741-745 NCBITaxon:10088 denotes mice
T8948 774-778 NCBITaxon:10088 denotes mice
T8949 828-836 SO:0000357 denotes flanking
T8950 963-968 SO:0000704 denotes genes
T8951 973-994 SO:0002138 denotes predicted transcripts

craft-sa-dev

Id Subject Object Predicate Lexical cue
T8971 0-6 NN denotes Genome
T8972 7-11 JJ denotes wide
T8973 6-7 HYPH denotes -
T8974 12-19 NN denotes linkage
T8975 20-22 IN denotes in
T8976 23-27 NNS denotes mice
T8977 27-28 . denotes .
T8978 28-234 sentence denotes One hundred and twenty DNA fragments were amplified across the genome, each selected to contain one or more strain-specific SNPs that would differentiate between C57BL/6J and 129x1/SvJ inbred strains [12].
T8979 29-32 CD denotes One
T8980 33-40 CD denotes hundred
T8981 56-65 NNS denotes fragments
T8982 41-44 CC denotes and
T8983 45-51 CD denotes twenty
T8984 52-55 NN denotes DNA
T8985 71-80 VBN denotes amplified
T8986 66-70 VBD denotes were
T8987 81-87 IN denotes across
T8988 88-91 DT denotes the
T8989 92-98 NN denotes genome
T8990 98-100 , denotes ,
T8991 100-104 DT denotes each
T8992 105-113 VBN denotes selected
T8993 114-116 TO denotes to
T8994 117-124 VB denotes contain
T8995 125-128 CD denotes one
T8996 153-157 NNS denotes SNPs
T8997 129-131 CC denotes or
T8998 132-136 JJR denotes more
T8999 137-143 NN denotes strain
T9000 144-152 JJ denotes specific
T9001 143-144 HYPH denotes -
T9002 158-162 WDT denotes that
T9003 169-182 VB denotes differentiate
T9004 163-168 MD denotes would
T9005 183-190 IN denotes between
T9006 191-196 NN denotes C57BL
T9007 197-199 NN denotes 6J
T9008 196-197 HYPH denotes /
T9009 221-228 NNS denotes strains
T9010 200-203 CC denotes and
T9011 204-209 NN denotes 129x1
T9012 210-213 NN denotes SvJ
T9013 209-210 HYPH denotes /
T9014 214-220 JJ denotes inbred
T9015 229-230 -LRB- denotes [
T9016 230-232 CD denotes 12
T9017 232-233 -RRB- denotes ]
T9018 233-234 . denotes .
T9019 234-398 sentence denotes Each fragment was initially amplified in 11 affected mice and nine unaffected mice; genotype calling was performed by dye-terminator sequencing of these fragments.
T9020 235-239 DT denotes Each
T9021 240-248 NN denotes fragment
T9022 263-272 VBN denotes amplified
T9023 249-252 VBD denotes was
T9024 253-262 RB denotes initially
T9025 340-349 VBN denotes performed
T9026 273-275 IN denotes in
T9027 276-278 CD denotes 11
T9028 288-292 NNS denotes mice
T9029 279-287 VBN denotes affected
T9030 293-296 CC denotes and
T9031 297-301 CD denotes nine
T9032 313-317 NNS denotes mice
T9033 302-312 JJ denotes unaffected
T9034 317-318 : denotes ;
T9035 319-327 NN denotes genotype
T9036 328-335 NN denotes calling
T9037 336-339 VBD denotes was
T9038 350-352 IN denotes by
T9039 353-356 NN denotes dye
T9040 357-367 NN denotes terminator
T9041 356-357 HYPH denotes -
T9042 368-378 NN denotes sequencing
T9043 379-381 IN denotes of
T9044 382-387 DT denotes these
T9045 388-397 NNS denotes fragments
T9046 397-398 . denotes .
T9047 398-599 sentence denotes Linkage analysis using these data was performed using mlink [13], which revealed a positive linkage at Chromosome 6qE1, on the 129x1/SvJ background (two-point LOD score 5.13 at marker 20.MMHAP85FLG2).
T9048 399-406 NN denotes Linkage
T9049 407-415 NN denotes analysis
T9050 437-446 VBN denotes performed
T9051 416-421 VBG denotes using
T9052 422-427 DT denotes these
T9053 428-432 NNS denotes data
T9054 433-436 VBD denotes was
T9055 447-452 VBG denotes using
T9056 453-458 NN denotes mlink
T9057 459-460 -LRB- denotes [
T9058 460-462 CD denotes 13
T9059 462-463 -RRB- denotes ]
T9060 463-465 , denotes ,
T9061 465-470 WDT denotes which
T9062 471-479 VBD denotes revealed
T9063 480-481 DT denotes a
T9064 491-498 NN denotes linkage
T9065 482-490 JJ denotes positive
T9066 499-501 IN denotes at
T9067 502-512 NN denotes Chromosome
T9068 513-517 NN denotes 6qE1
T9069 517-519 , denotes ,
T9070 519-521 IN denotes on
T9071 522-525 DT denotes the
T9072 536-546 NN denotes background
T9073 526-531 NN denotes 129x1
T9074 532-535 NN denotes SvJ
T9075 531-532 HYPH denotes /
T9076 547-548 -LRB- denotes (
T9077 562-567 NN denotes score
T9078 548-551 CD denotes two
T9079 552-557 NN denotes point
T9080 551-552 HYPH denotes -
T9081 558-561 NN denotes LOD
T9082 568-572 CD denotes 5.13
T9083 573-575 IN denotes at
T9084 576-582 NN denotes marker
T9085 583-597 NN denotes 20.MMHAP85FLG2
T9086 597-598 -RRB- denotes )
T9087 598-599 . denotes .
T9088 599-746 sentence denotes In an attempt to narrow the disease interval we performed backcross experiments that resulted in the generation of three additional affected mice.
T9089 600-602 IN denotes In
T9090 648-657 VBD denotes performed
T9091 603-605 DT denotes an
T9092 606-613 NN denotes attempt
T9093 614-616 TO denotes to
T9094 617-623 VB denotes narrow
T9095 624-627 DT denotes the
T9096 636-644 NN denotes interval
T9097 628-635 NN denotes disease
T9098 645-647 PRP denotes we
T9099 658-667 NN denotes backcross
T9100 668-679 NNS denotes experiments
T9101 680-684 WDT denotes that
T9102 685-693 VBD denotes resulted
T9103 694-696 IN denotes in
T9104 697-700 DT denotes the
T9105 701-711 NN denotes generation
T9106 712-714 IN denotes of
T9107 715-720 CD denotes three
T9108 741-745 NNS denotes mice
T9109 721-731 JJ denotes additional
T9110 732-740 VBN denotes affected
T9111 745-746 . denotes .
T9112 746-938 sentence denotes Genotyping of all affected mice across the disease-segregating interval revealed flanking recombinants and a candidate region of ~5 Mb, between markers D6Mit37 and 44.MMHAP85FLG5 (Figure S1).
T9113 747-757 NN denotes Genotyping
T9114 819-827 VBD denotes revealed
T9115 758-760 IN denotes of
T9116 761-764 DT denotes all
T9117 774-778 NNS denotes mice
T9118 765-773 VBN denotes affected
T9119 779-785 IN denotes across
T9120 786-789 DT denotes the
T9121 810-818 NN denotes interval
T9122 790-797 NN denotes disease
T9123 798-809 VBG denotes segregating
T9124 797-798 HYPH denotes -
T9125 828-836 VBG denotes flanking
T9126 837-849 NNS denotes recombinants
T9127 850-853 CC denotes and
T9128 854-855 DT denotes a
T9129 866-872 NN denotes region
T9130 856-865 NN denotes candidate
T9131 873-875 IN denotes of
T9132 876-877 SYM denotes ~
T9133 877-878 CD denotes 5
T9134 879-881 NN denotes Mb
T9135 881-883 , denotes ,
T9136 883-890 IN denotes between
T9137 891-898 NNS denotes markers
T9138 899-906 NN denotes D6Mit37
T9139 907-910 CC denotes and
T9140 911-925 NN denotes 44.MMHAP85FLG5
T9141 926-927 -LRB- denotes (
T9142 934-936 NN denotes S1
T9143 927-933 NN denotes Figure
T9144 936-937 -RRB- denotes )
T9145 937-938 . denotes .
T9146 938-995 sentence denotes This region contains 16 genes and predicted transcripts.
T9147 939-943 DT denotes This
T9148 944-950 NN denotes region
T9149 951-959 VBZ denotes contains
T9150 960-962 CD denotes 16
T9151 963-968 NNS denotes genes
T9152 969-972 CC denotes and
T9153 973-982 VBN denotes predicted
T9154 983-994 NNS denotes transcripts
T9155 994-995 . denotes .
R2535 T8971 T8972 npadvmod Genome,wide
R2536 T8972 T8974 amod wide,linkage
R2537 T8973 T8972 punct -,wide
R2538 T8975 T8974 prep in,linkage
R2539 T8976 T8975 pobj mice,in
R2540 T8977 T8974 punct .,linkage
R2541 T8979 T8980 compound One,hundred
R2542 T8980 T8981 nummod hundred,fragments
R2543 T8981 T8985 nsubjpass fragments,amplified
R2544 T8982 T8980 cc and,hundred
R2545 T8983 T8980 conj twenty,hundred
R2546 T8984 T8981 compound DNA,fragments
R2547 T8986 T8985 auxpass were,amplified
R2548 T8987 T8985 prep across,amplified
R2549 T8988 T8989 det the,genome
R2550 T8989 T8987 pobj genome,across
R2551 T8990 T8985 punct ", ",amplified
R2552 T8991 T8985 npadvmod each,amplified
R2553 T8992 T8991 acl selected,each
R2554 T8993 T8994 aux to,contain
R2555 T8994 T8992 advcl contain,selected
R2556 T8995 T8996 nummod one,SNPs
R2557 T8996 T8994 dobj SNPs,contain
R2558 T8997 T8995 cc or,one
R2559 T8998 T8995 conj more,one
R2560 T8999 T9000 npadvmod strain,specific
R2561 T9000 T8996 amod specific,SNPs
R2562 T9001 T9000 punct -,specific
R2563 T9002 T9003 dep that,differentiate
R2564 T9003 T8996 relcl differentiate,SNPs
R2565 T9004 T9003 aux would,differentiate
R2566 T9005 T9003 prep between,differentiate
R2567 T9006 T9007 nmod C57BL,6J
R2568 T9007 T9009 nmod 6J,strains
R2569 T9008 T9007 punct /,6J
R2570 T9009 T9005 pobj strains,between
R2571 T9010 T9007 cc and,6J
R2572 T9011 T9012 compound 129x1,SvJ
R2573 T9012 T9007 conj SvJ,6J
R2574 T9013 T9012 punct /,SvJ
R2575 T9014 T9009 amod inbred,strains
R2576 T9015 T9016 punct [,12
R2577 T9016 T8985 parataxis 12,amplified
R2578 T9017 T9016 punct ],12
R2579 T9018 T8985 punct .,amplified
R2580 T9020 T9021 det Each,fragment
R2581 T9021 T9022 nsubjpass fragment,amplified
R2582 T9022 T9025 ccomp amplified,performed
R2583 T9023 T9022 auxpass was,amplified
R2584 T9024 T9022 advmod initially,amplified
R2585 T9026 T9022 prep in,amplified
R2586 T9027 T9028 nummod 11,mice
R2587 T9028 T9026 pobj mice,in
R2588 T9029 T9028 amod affected,mice
R2589 T9030 T9028 cc and,mice
R2590 T9031 T9032 nummod nine,mice
R2591 T9032 T9028 conj mice,mice
R2592 T9033 T9032 amod unaffected,mice
R2593 T9034 T9025 punct ;,performed
R2594 T9035 T9036 compound genotype,calling
R2595 T9036 T9025 nsubjpass calling,performed
R2596 T9037 T9025 auxpass was,performed
R2597 T9038 T9025 prep by,performed
R2598 T9039 T9040 compound dye,terminator
R2599 T9040 T9042 compound terminator,sequencing
R2600 T9041 T9040 punct -,terminator
R2601 T9042 T9038 pobj sequencing,by
R2602 T9043 T9042 prep of,sequencing
R2603 T9044 T9045 det these,fragments
R2604 T9045 T9043 pobj fragments,of
R2605 T9046 T9025 punct .,performed
R2606 T9048 T9049 compound Linkage,analysis
R2607 T9049 T9050 nsubjpass analysis,performed
R2608 T9051 T9049 acl using,analysis
R2609 T9052 T9053 det these,data
R2610 T9053 T9051 dobj data,using
R2611 T9054 T9050 auxpass was,performed
R2612 T9055 T9050 advcl using,performed
R2613 T9056 T9055 dobj mlink,using
R2614 T9057 T9058 punct [,13
R2615 T9058 T9055 parataxis 13,using
R2616 T9059 T9058 punct ],13
R2617 T9060 T9050 punct ", ",performed
R2618 T9061 T9062 dep which,revealed
R2619 T9062 T9050 advcl revealed,performed
R2620 T9063 T9064 det a,linkage
R2621 T9064 T9062 dobj linkage,revealed
R2622 T9065 T9064 amod positive,linkage
R2623 T9066 T9062 prep at,revealed
R2624 T9067 T9068 compound Chromosome,6qE1
R2625 T9068 T9066 pobj 6qE1,at
R2626 T9069 T9062 punct ", ",revealed
R2627 T9070 T9062 prep on,revealed
R2628 T9071 T9072 det the,background
R2629 T9072 T9070 pobj background,on
R2630 T9073 T9074 compound 129x1,SvJ
R2631 T9074 T9072 compound SvJ,background
R2632 T9075 T9074 punct /,SvJ
R2633 T9076 T9077 punct (,score
R2634 T9077 T9072 parataxis score,background
R2635 T9078 T9079 nummod two,point
R2636 T9079 T9077 compound point,score
R2637 T9080 T9079 punct -,point
R2638 T9081 T9077 compound LOD,score
R2639 T9082 T9077 nummod 5.13,score
R2640 T9083 T9077 prep at,score
R2641 T9084 T9085 compound marker,20.MMHAP85FLG2
R2642 T9085 T9083 pobj 20.MMHAP85FLG2,at
R2643 T9086 T9077 punct ),score
R2644 T9087 T9050 punct .,performed
R2645 T9089 T9090 prep In,performed
R2646 T9091 T9092 det an,attempt
R2647 T9092 T9089 pobj attempt,In
R2648 T9093 T9094 aux to,narrow
R2649 T9094 T9092 acl narrow,attempt
R2650 T9095 T9096 det the,interval
R2651 T9096 T9094 dobj interval,narrow
R2652 T9097 T9096 compound disease,interval
R2653 T9098 T9090 nsubj we,performed
R2654 T9099 T9100 compound backcross,experiments
R2655 T9100 T9090 dobj experiments,performed
R2656 T9101 T9102 dep that,resulted
R2657 T9102 T9100 relcl resulted,experiments
R2658 T9103 T9102 prep in,resulted
R2659 T9104 T9105 det the,generation
R2660 T9105 T9103 pobj generation,in
R2661 T9106 T9105 prep of,generation
R2662 T9107 T9108 nummod three,mice
R2663 T9108 T9106 pobj mice,of
R2664 T9109 T9108 amod additional,mice
R2665 T9110 T9108 amod affected,mice
R2666 T9111 T9090 punct .,performed
R2667 T9113 T9114 nsubj Genotyping,revealed
R2668 T9115 T9113 prep of,Genotyping
R2669 T9116 T9117 det all,mice
R2670 T9117 T9115 pobj mice,of
R2671 T9118 T9117 amod affected,mice
R2672 T9119 T9113 prep across,Genotyping
R2673 T9120 T9121 det the,interval
R2674 T9121 T9119 pobj interval,across
R2675 T9122 T9123 npadvmod disease,segregating
R2676 T9123 T9121 amod segregating,interval
R2677 T9124 T9123 punct -,segregating
R2678 T9125 T9126 amod flanking,recombinants
R2679 T9126 T9114 dobj recombinants,revealed
R2680 T9127 T9126 cc and,recombinants
R2681 T9128 T9129 det a,region
R2682 T9129 T9126 conj region,recombinants
R2683 T9130 T9129 compound candidate,region
R2684 T9131 T9129 prep of,region
R2685 T9132 T9133 punct ~,5
R2686 T9133 T9134 nummod 5,Mb
R2687 T9134 T9131 pobj Mb,of
R2688 T9135 T9114 punct ", ",revealed
R2689 T9136 T9114 prep between,revealed
R2690 T9137 T9138 compound markers,D6Mit37
R2691 T9138 T9136 pobj D6Mit37,between
R2692 T9139 T9138 cc and,D6Mit37
R2693 T9140 T9138 conj 44.MMHAP85FLG5,D6Mit37
R2694 T9141 T9142 punct (,S1
R2695 T9142 T9114 parataxis S1,revealed
R2696 T9143 T9142 compound Figure,S1
R2697 T9144 T9142 punct ),S1
R2698 T9145 T9114 punct .,revealed
R2699 T9147 T9148 det This,region
R2700 T9148 T9149 nsubj region,contains
R2701 T9150 T9151 nummod 16,genes
R2702 T9151 T9149 dobj genes,contains
R2703 T9152 T9151 cc and,genes
R2704 T9153 T9154 amod predicted,transcripts
R2705 T9154 T9151 conj transcripts,genes
R2706 T9155 T9149 punct .,contains

2_test

Id Subject Object Predicate Lexical cue
17590087-10742102-85657859 230-232 10742102 denotes 12
17590087-6587361-85657860 460-462 6587361 denotes 13
T7451 230-232 10742102 denotes 12
T31814 460-462 6587361 denotes 13