PMC:1867812 / 43771-44721 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/1867812","sourcedb":"PMC","sourceid":"1867812","source_url":"https://www.ncbi.nlm.nih.gov/pmc/1867812","text":"Table 5 A summary of the GSGS folding trajectories.\nProtein Name: GSGS or Beta3s; Primary sequence: 20 residues; Designed protein;Native fold: three stranded anti-parallel β-sheets with turns at 6–7 and 14–15\nTrajectory Five trajectories: T1, T2, T3, T4 and T5;T1 : 25, 664 conformations; T2 : 30, 075 conformations;T3 : 19, 649 conformations; T4 : 25, 263 conformations;T5 : 25, 664 conformations;\nContact map Based on contacts between α-carbons.Two α-carbons are in contact if their Euclidian distance is ≤ 8.5 Å\nBit-patterns A total of 50, 572 unique maximally connected bit-patterns were identified from all conformations;Average number of bit-patterns per conformation is 4;Bit-patterns are further classified into 12 approximately equivalent types\nInteracting bit-patterns If at least one pair of α-carbons, one from each bit-pattern, is of Euclidian distance ≤ 10 Å\nFrequent SOAPs A SOAP is frequent if it appears in ≥ 10 conformations;","divisions":[{"label":"label","span":{"begin":0,"end":7}},{"label":"caption","span":{"begin":9,"end":52}},{"label":"p","span":{"begin":9,"end":52}},{"label":"tr","span":{"begin":53,"end":210}},{"label":"td","span":{"begin":53,"end":60}},{"label":"td","span":{"begin":62,"end":210}},{"label":"tr","span":{"begin":211,"end":401}},{"label":"td","span":{"begin":211,"end":221}},{"label":"td","span":{"begin":223,"end":401}},{"label":"tr","span":{"begin":402,"end":518}},{"label":"td","span":{"begin":402,"end":413}},{"label":"td","span":{"begin":415,"end":518}},{"label":"tr","span":{"begin":519,"end":758}},{"label":"td","span":{"begin":519,"end":531}},{"label":"td","span":{"begin":533,"end":758}},{"label":"tr","span":{"begin":759,"end":878}},{"label":"td","span":{"begin":759,"end":783}},{"label":"td","span":{"begin":785,"end":878}},{"label":"td","span":{"begin":879,"end":893}}],"tracks":[]}