PMC:1860061 / 8985-9691 JSONTXT

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    craft-sa-dev

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of the expression level was done using Affymetrix software MAS 5, which is based on global scaling of total gene expression level per microarray. The normalised expression values were imported to and analysed by dCHIP [24]. Differentially expressed genes were identified by defining the appropriate filtering criteria in the dCHIP software as: lower 90% confidence boundary of fold change between the group means exceeded twofold; the absolute difference between the two groups exceeded 100; the P value threshold of the unpaired t-test was 0.05. The false discovery rate was established with a permutation test for each pairwise comparison to estimate the proportion of false-positive genes."}

    craft-ca-core-ex-dev

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    2_test

    {"project":"2_test","denotations":[{"id":"17244351-11134512-4361129","span":{"begin":233,"end":235},"obj":"11134512"}],"text":"Normalisation of the expression level was done using Affymetrix software MAS 5, which is based on global scaling of total gene expression level per microarray. The normalised expression values were imported to and analysed by dCHIP [24]. Differentially expressed genes were identified by defining the appropriate filtering criteria in the dCHIP software as: lower 90% confidence boundary of fold change between the group means exceeded twofold; the absolute difference between the two groups exceeded 100; the P value threshold of the unpaired t-test was 0.05. The false discovery rate was established with a permutation test for each pairwise comparison to estimate the proportion of false-positive genes."}

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T5566","span":{"begin":21,"end":31},"obj":"GO:0010467"},{"id":"T5567","span":{"begin":122,"end":126},"obj":"SO:0000704"},{"id":"T5568","span":{"begin":122,"end":137},"obj":"GO:0010467"},{"id":"T5569","span":{"begin":175,"end":185},"obj":"GO:0010467"},{"id":"T5570","span":{"begin":253,"end":262},"obj":"GO:0010467"},{"id":"T5571","span":{"begin":263,"end":268},"obj":"SO:0000704"},{"id":"T5572","span":{"begin":700,"end":705},"obj":"SO:0000704"}],"text":"Normalisation of the expression level was done using Affymetrix software MAS 5, which is based on global scaling of total gene expression level per microarray. The normalised expression values were imported to and analysed by dCHIP [24]. Differentially expressed genes were identified by defining the appropriate filtering criteria in the dCHIP software as: lower 90% confidence boundary of fold change between the group means exceeded twofold; the absolute difference between the two groups exceeded 100; the P value threshold of the unpaired t-test was 0.05. The false discovery rate was established with a permutation test for each pairwise comparison to estimate the proportion of false-positive genes."}