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PMC:1860061 / 17127-19046 JSONTXT

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Id Subject Object Predicate Lexical cue
T10781 0-9 NN denotes Candidate
T10782 10-15 NNS denotes genes
T10783 16-19 IN denotes for
T10784 20-23 DT denotes the
T10785 37-40 NNS denotes QTL
T10786 24-29 JJ denotes small
T10787 30-36 NN denotes effect
T10788 29-30 HYPH denotes -
T10789 41-43 IN denotes of
T10790 44-47 NN denotes CIA
T10791 47-314 sentence denotes To identify candidate susceptibility genes for the CIA small-effect QTL, we compared the list of strain-specific differentially expressed genes with the list of disease-specific differentially expressed genes; 117 genes were shared by both lists (Additional file 3).
T10792 48-50 TO denotes To
T10793 51-59 VB denotes identify
T10794 124-132 VBD denotes compared
T10795 60-69 NN denotes candidate
T10796 85-90 NNS denotes genes
T10797 70-84 NN denotes susceptibility
T10798 91-94 IN denotes for
T10799 95-98 DT denotes the
T10800 116-119 NNS denotes QTL
T10801 99-102 NN denotes CIA
T10802 103-108 JJ denotes small
T10803 109-115 NN denotes effect
T10804 108-109 HYPH denotes -
T10805 119-121 , denotes ,
T10806 121-123 PRP denotes we
T10807 273-279 VBN denotes shared
T10808 133-136 DT denotes the
T10809 137-141 NN denotes list
T10810 142-144 IN denotes of
T10811 145-151 NN denotes strain
T10812 152-160 JJ denotes specific
T10813 151-152 HYPH denotes -
T10814 186-191 NNS denotes genes
T10815 161-175 RB denotes differentially
T10816 176-185 VBN denotes expressed
T10817 192-196 IN denotes with
T10818 197-200 DT denotes the
T10819 201-205 NN denotes list
T10820 206-208 IN denotes of
T10821 209-216 NN denotes disease
T10822 217-225 JJ denotes specific
T10823 216-217 HYPH denotes -
T10824 251-256 NNS denotes genes
T10825 226-240 RB denotes differentially
T10826 241-250 VBN denotes expressed
T10827 256-257 : denotes ;
T10828 258-261 CD denotes 117
T10829 262-267 NNS denotes genes
T10830 268-272 VBD denotes were
T10831 280-282 IN denotes by
T10832 283-287 DT denotes both
T10833 288-293 NNS denotes lists
T10834 294-295 -LRB- denotes (
T10835 306-310 NN denotes file
T10836 295-305 JJ denotes Additional
T10837 311-312 CD denotes 3
T10838 312-313 -RRB- denotes )
T10839 313-314 . denotes .
T10840 314-428 sentence denotes Figure 3 visualises positions of the 117 genes retrieved from Ensembl [30] in relation to the 8 small-effect QTL.
T10841 315-321 NN denotes Figure
T10842 324-334 VBZ denotes visualises
T10843 322-323 CD denotes 3
T10844 335-344 NNS denotes positions
T10845 345-347 IN denotes of
T10846 348-351 DT denotes the
T10847 356-361 NNS denotes genes
T10848 352-355 CD denotes 117
T10849 362-371 VBN denotes retrieved
T10850 372-376 IN denotes from
T10851 377-384 NNP denotes Ensembl
T10852 385-386 -LRB- denotes [
T10853 386-388 CD denotes 30
T10854 388-389 -RRB- denotes ]
T10855 390-392 IN denotes in
T10856 393-401 NN denotes relation
T10857 402-404 IN denotes to
T10858 405-408 DT denotes the
T10859 424-427 NNS denotes QTL
T10860 409-410 CD denotes 8
T10861 411-416 JJ denotes small
T10862 417-423 NN denotes effect
T10863 416-417 HYPH denotes -
T10864 427-428 . denotes .
T10865 428-502 sentence denotes The eight loci were located on 7 chromosomes, 5, 6, 7, 10, 11, 16 and 17.
T10866 429-432 DT denotes The
T10867 439-443 NNS denotes loci
T10868 433-438 CD denotes eight
T10869 449-456 VBN denotes located
T10870 444-448 VBD denotes were
T10871 457-459 IN denotes on
T10872 460-461 CD denotes 7
T10873 462-473 NNS denotes chromosomes
T10874 473-475 , denotes ,
T10875 475-476 CD denotes 5
T10876 476-478 , denotes ,
T10877 478-479 CD denotes 6
T10878 479-481 , denotes ,
T10879 481-482 CD denotes 7
T10880 482-484 , denotes ,
T10881 484-486 CD denotes 10
T10882 486-488 , denotes ,
T10883 488-490 CD denotes 11
T10884 490-492 , denotes ,
T10885 492-494 CD denotes 16
T10886 495-498 CC denotes and
T10887 499-501 CD denotes 17
T10888 501-502 . denotes .
T10889 502-633 sentence denotes Since the confidence intervals of QTL in F2 progeny are around 20 cM [26], we used 40 Mb as the confidence intervals for all loci.
T10890 503-508 IN denotes Since
T10891 555-558 VBP denotes are
T10892 509-512 DT denotes the
T10893 524-533 NNS denotes intervals
T10894 513-523 NN denotes confidence
T10895 534-536 IN denotes of
T10896 537-540 NNS denotes QTL
T10897 541-543 IN denotes in
T10898 544-546 NN denotes F2
T10899 547-554 NN denotes progeny
T10900 581-585 VBD denotes used
T10901 559-565 IN denotes around
T10902 566-568 CD denotes 20
T10903 569-571 NN denotes cM
T10904 572-573 -LRB- denotes [
T10905 573-575 CD denotes 26
T10906 575-576 -RRB- denotes ]
T10907 576-578 , denotes ,
T10908 578-580 PRP denotes we
T10909 586-588 CD denotes 40
T10910 589-591 NN denotes Mb
T10911 592-594 IN denotes as
T10912 595-598 DT denotes the
T10913 610-619 NNS denotes intervals
T10914 599-609 NN denotes confidence
T10915 620-623 IN denotes for
T10916 624-627 DT denotes all
T10917 628-632 NNS denotes loci
T10918 632-633 . denotes .
T10919 633-716 sentence denotes Twenty-one genes were located in the confidence intervals of six of the eight QTL.
T10920 634-640 CD denotes Twenty
T10921 641-644 CD denotes one
T10922 640-641 HYPH denotes -
T10923 645-650 NNS denotes genes
T10924 656-663 VBN denotes located
T10925 651-655 VBD denotes were
T10926 664-666 IN denotes in
T10927 667-670 DT denotes the
T10928 682-691 NNS denotes intervals
T10929 671-681 NN denotes confidence
T10930 692-694 IN denotes of
T10931 695-698 CD denotes six
T10932 706-711 CD denotes eight
T10933 699-701 IN denotes of
T10934 702-705 DT denotes the
T10935 712-715 NNS denotes QTL
T10936 715-716 . denotes .
T10937 716-905 sentence denotes We located 5, 4, 2, 1, 3 and 6 potential candidate genes within the confidence intervals of loci 1, 2, 3, 5, 6 and 8, respectively, while no candidate gene was identified for loci 4 and 7.
T10938 717-719 PRP denotes We
T10939 720-727 VBD denotes located
T10940 728-729 CD denotes 5
T10941 768-773 NNS denotes genes
T10942 729-731 , denotes ,
T10943 731-732 CD denotes 4
T10944 732-734 , denotes ,
T10945 734-735 CD denotes 2
T10946 735-737 , denotes ,
T10947 737-738 CD denotes 1
T10948 738-740 , denotes ,
T10949 740-741 CD denotes 3
T10950 742-745 CC denotes and
T10951 746-747 CD denotes 6
T10952 748-757 JJ denotes potential
T10953 758-767 NN denotes candidate
T10954 774-780 IN denotes within
T10955 781-784 DT denotes the
T10956 796-805 NNS denotes intervals
T10957 785-795 NN denotes confidence
T10958 806-808 IN denotes of
T10959 809-813 NNS denotes loci
T10960 814-815 CD denotes 1
T10961 815-817 , denotes ,
T10962 817-818 CD denotes 2
T10963 818-820 , denotes ,
T10964 820-821 CD denotes 3
T10965 821-823 , denotes ,
T10966 823-824 CD denotes 5
T10967 824-826 , denotes ,
T10968 826-827 CD denotes 6
T10969 828-831 CC denotes and
T10970 832-833 CD denotes 8
T10971 833-835 , denotes ,
T10972 835-847 RB denotes respectively
T10973 847-849 , denotes ,
T10974 849-854 IN denotes while
T10975 877-887 VBN denotes identified
T10976 855-857 DT denotes no
T10977 868-872 NN denotes gene
T10978 858-867 NN denotes candidate
T10979 873-876 VBD denotes was
T10980 888-891 IN denotes for
T10981 892-896 NNS denotes loci
T10982 897-898 CD denotes 4
T10983 899-902 CC denotes and
T10984 903-904 CD denotes 7
T10985 904-905 . denotes .
T10986 905-973 sentence denotes Table 3 summarises the 21 candidate genes identified in this study.
T10987 906-911 NN denotes Table
T10988 914-924 VBZ denotes summarises
T10989 912-913 CD denotes 3
T10990 925-928 DT denotes the
T10991 942-947 NNS denotes genes
T10992 929-931 CD denotes 21
T10993 932-941 NN denotes candidate
T10994 948-958 VBN denotes identified
T10995 959-961 IN denotes in
T10996 962-966 DT denotes this
T10997 967-972 NN denotes study
T10998 972-973 . denotes .
T10999 973-1090 sentence denotes Two genes, hspa1a and Oas1a, were upregulated at the OA phase of CIA and Oas1a was also upregulated at the PI phase.
T11000 974-977 CD denotes Two
T11001 978-983 NNS denotes genes
T11002 1008-1019 VBN denotes upregulated
T11003 983-985 , denotes ,
T11004 985-991 NN denotes hspa1a
T11005 992-995 CC denotes and
T11006 996-1001 NN denotes Oas1a
T11007 1001-1003 , denotes ,
T11008 1003-1007 VBD denotes were
T11009 1020-1022 IN denotes at
T11010 1023-1026 DT denotes the
T11011 1030-1035 NN denotes phase
T11012 1027-1029 NN denotes OA
T11013 1036-1038 IN denotes of
T11014 1039-1042 NN denotes CIA
T11015 1043-1046 CC denotes and
T11016 1047-1052 NN denotes Oas1a
T11017 1062-1073 VBN denotes upregulated
T11018 1053-1056 VBD denotes was
T11019 1057-1061 RB denotes also
T11020 1074-1076 IN denotes at
T11021 1077-1080 DT denotes the
T11022 1084-1089 NN denotes phase
T11023 1081-1083 NN denotes PI
T11024 1089-1090 . denotes .
T11025 1090-1185 sentence denotes Except for these two genes, all other 19 genes were downregulated at the chronic phase of CIA.
T11026 1091-1097 IN denotes Except
T11027 1143-1156 VBN denotes downregulated
T11028 1098-1101 IN denotes for
T11029 1102-1107 DT denotes these
T11030 1112-1117 NNS denotes genes
T11031 1108-1111 CD denotes two
T11032 1117-1119 , denotes ,
T11033 1119-1122 DT denotes all
T11034 1132-1137 NNS denotes genes
T11035 1123-1128 JJ denotes other
T11036 1129-1131 CD denotes 19
T11037 1138-1142 VBD denotes were
T11038 1157-1159 IN denotes at
T11039 1160-1163 DT denotes the
T11040 1172-1177 NN denotes phase
T11041 1164-1171 JJ denotes chronic
T11042 1178-1180 IN denotes of
T11043 1181-1184 NN denotes CIA
T11044 1184-1185 . denotes .
T11045 1185-1282 sentence denotes All genes, except hspa1a, showed expression differences between the two strains at the NC phase.
T11046 1186-1189 DT denotes All
T11047 1190-1195 NNS denotes genes
T11048 1212-1218 VBD denotes showed
T11049 1195-1197 , denotes ,
T11050 1197-1203 IN denotes except
T11051 1204-1210 NN denotes hspa1a
T11052 1210-1212 , denotes ,
T11053 1219-1229 NN denotes expression
T11054 1230-1241 NNS denotes differences
T11055 1242-1249 IN denotes between
T11056 1250-1253 DT denotes the
T11057 1258-1265 NNS denotes strains
T11058 1254-1257 CD denotes two
T11059 1266-1268 IN denotes at
T11060 1269-1272 DT denotes the
T11061 1276-1281 NN denotes phase
T11062 1273-1275 NN denotes NC
T11063 1281-1282 . denotes .
T11064 1282-1394 sentence denotes Five genes were differentially expressed at all phases of CIA, including H2-Q10, Mapk14, Pscd1, Kpnb1 and Wdr1.
T11065 1283-1287 CD denotes Five
T11066 1288-1293 NNS denotes genes
T11067 1314-1323 VBN denotes expressed
T11068 1294-1298 VBD denotes were
T11069 1299-1313 RB denotes differentially
T11070 1324-1326 IN denotes at
T11071 1327-1330 DT denotes all
T11072 1331-1337 NNS denotes phases
T11073 1338-1340 IN denotes of
T11074 1341-1344 NN denotes CIA
T11075 1344-1346 , denotes ,
T11076 1346-1355 VBG denotes including
T11077 1356-1358 NN denotes H2
T11078 1359-1362 NN denotes Q10
T11079 1358-1359 HYPH denotes -
T11080 1362-1364 , denotes ,
T11081 1364-1370 NN denotes Mapk14
T11082 1370-1372 , denotes ,
T11083 1372-1377 NN denotes Pscd1
T11084 1377-1379 , denotes ,
T11085 1379-1384 NN denotes Kpnb1
T11086 1385-1388 CC denotes and
T11087 1389-1393 NN denotes Wdr1
T11088 1393-1394 . denotes .
T11089 1394-1678 sentence denotes Among these five genes, H2-Q10 had a consistently higher expression in the DBA/1 than the FVB/N strain in all CIA phases, while the other four genes had a higher expression in the DBA/1 strain at the early stages, including NC, PI and OA, but a lower expression at the chronic phase.
T11090 1395-1400 IN denotes Among
T11091 1426-1429 VBD denotes had
T11092 1401-1406 DT denotes these
T11093 1412-1417 NNS denotes genes
T11094 1407-1411 CD denotes five
T11095 1417-1419 , denotes ,
T11096 1419-1421 NN denotes H2
T11097 1422-1425 NN denotes Q10
T11098 1421-1422 HYPH denotes -
T11099 1430-1431 DT denotes a
T11100 1452-1462 NN denotes expression
T11101 1432-1444 RB denotes consistently
T11102 1445-1451 JJR denotes higher
T11103 1463-1465 IN denotes in
T11104 1466-1469 DT denotes the
T11105 1470-1473 NN denotes DBA
T11106 1473-1474 HYPH denotes /
T11107 1474-1475 CD denotes 1
T11108 1476-1480 IN denotes than
T11109 1481-1484 DT denotes the
T11110 1491-1497 NN denotes strain
T11111 1485-1488 NN denotes FVB
T11112 1489-1490 NN denotes N
T11113 1488-1489 HYPH denotes /
T11114 1498-1500 IN denotes in
T11115 1501-1504 DT denotes all
T11116 1509-1515 NNS denotes phases
T11117 1505-1508 NN denotes CIA
T11118 1515-1517 , denotes ,
T11119 1517-1522 IN denotes while
T11120 1544-1547 VBD denotes had
T11121 1523-1526 DT denotes the
T11122 1538-1543 NNS denotes genes
T11123 1527-1532 JJ denotes other
T11124 1533-1537 CD denotes four
T11125 1548-1549 DT denotes a
T11126 1557-1567 NN denotes expression
T11127 1550-1556 JJR denotes higher
T11128 1568-1570 IN denotes in
T11129 1571-1574 DT denotes the
T11130 1581-1587 NN denotes strain
T11131 1575-1578 NN denotes DBA
T11132 1578-1579 HYPH denotes /
T11133 1579-1580 CD denotes 1
T11134 1588-1590 IN denotes at
T11135 1591-1594 DT denotes the
T11136 1601-1607 NNS denotes stages
T11137 1595-1600 JJ denotes early
T11138 1607-1609 , denotes ,
T11139 1609-1618 VBG denotes including
T11140 1619-1621 NN denotes NC
T11141 1621-1623 , denotes ,
T11142 1623-1625 NN denotes PI
T11143 1626-1629 CC denotes and
T11144 1630-1632 NN denotes OA
T11145 1632-1634 , denotes ,
T11146 1634-1637 CC denotes but
T11147 1638-1639 DT denotes a
T11148 1646-1656 NN denotes expression
T11149 1640-1645 JJR denotes lower
T11150 1657-1659 IN denotes at
T11151 1660-1663 DT denotes the
T11152 1672-1677 NN denotes phase
T11153 1664-1671 JJ denotes chronic
T11154 1677-1678 . denotes .
T11155 1678-1827 sentence denotes GO term classification analysis revealed that the functional cluster of protein kinase cascade was significantly enriched in the 21 candidate genes.
T11156 1679-1681 NN denotes GO
T11157 1702-1710 NN denotes analysis
T11158 1682-1686 NN denotes term
T11159 1687-1701 NN denotes classification
T11160 1711-1719 VBD denotes revealed
T11161 1720-1724 IN denotes that
T11162 1792-1800 VBN denotes enriched
T11163 1725-1728 DT denotes the
T11164 1740-1747 NN denotes cluster
T11165 1729-1739 JJ denotes functional
T11166 1748-1750 IN denotes of
T11167 1751-1758 NN denotes protein
T11168 1766-1773 NN denotes cascade
T11169 1759-1765 NN denotes kinase
T11170 1774-1777 VBD denotes was
T11171 1778-1791 RB denotes significantly
T11172 1801-1803 IN denotes in
T11173 1804-1807 DT denotes the
T11174 1821-1826 NNS denotes genes
T11175 1808-1810 CD denotes 21
T11176 1811-1820 NN denotes candidate
T11177 1826-1827 . denotes .
T11178 1827-1919 sentence denotes This functional cluster contained four genes, including Mapk14, Mapk8ip3, Stat5a and Gna12.
T11179 1828-1832 DT denotes This
T11180 1844-1851 NN denotes cluster
T11181 1833-1843 JJ denotes functional
T11182 1852-1861 VBD denotes contained
T11183 1862-1866 CD denotes four
T11184 1867-1872 NNS denotes genes
T11185 1872-1874 , denotes ,
T11186 1874-1883 VBG denotes including
T11187 1884-1890 NN denotes Mapk14
T11188 1890-1892 , denotes ,
T11189 1892-1900 NN denotes Mapk8ip3
T11190 1900-1902 , denotes ,
T11191 1902-1908 NN denotes Stat5a
T11192 1909-1912 CC denotes and
T11193 1913-1918 NN denotes Gna12
T11194 1918-1919 . denotes .
R3127 T10781 T10782 compound Candidate,genes
R3128 T10783 T10782 prep for,genes
R3129 T10784 T10785 det the,QTL
R3130 T10785 T10783 pobj QTL,for
R3131 T10786 T10787 amod small,effect
R3132 T10787 T10785 compound effect,QTL
R3133 T10788 T10787 punct -,effect
R3134 T10789 T10785 prep of,QTL
R3135 T10790 T10789 pobj CIA,of
R3136 T10792 T10793 aux To,identify
R3137 T10793 T10794 advcl identify,compared
R3138 T10794 T10807 ccomp compared,shared
R3139 T10795 T10796 compound candidate,genes
R3140 T10796 T10793 dobj genes,identify
R3141 T10797 T10796 compound susceptibility,genes
R3142 T10798 T10796 prep for,genes
R3143 T10799 T10800 det the,QTL
R3144 T10800 T10798 pobj QTL,for
R3145 T10801 T10800 nmod CIA,QTL
R3146 T10802 T10803 amod small,effect
R3147 T10803 T10800 compound effect,QTL
R3148 T10804 T10803 punct -,effect
R3149 T10805 T10794 punct ", ",compared
R3150 T10806 T10794 nsubj we,compared
R3151 T10808 T10809 det the,list
R3152 T10809 T10794 dobj list,compared
R3153 T10810 T10809 prep of,list
R3154 T10811 T10812 npadvmod strain,specific
R3155 T10812 T10814 amod specific,genes
R3156 T10813 T10812 punct -,specific
R3157 T10814 T10810 pobj genes,of
R3158 T10815 T10816 advmod differentially,expressed
R3159 T10816 T10814 amod expressed,genes
R3160 T10817 T10794 prep with,compared
R3161 T10818 T10819 det the,list
R3162 T10819 T10817 pobj list,with
R3163 T10820 T10819 prep of,list
R3164 T10821 T10822 npadvmod disease,specific
R3165 T10822 T10824 amod specific,genes
R3166 T10823 T10822 punct -,specific
R3167 T10824 T10820 pobj genes,of
R3168 T10825 T10826 advmod differentially,expressed
R3169 T10826 T10824 amod expressed,genes
R3170 T10827 T10807 punct ;,shared
R3171 T10828 T10829 nummod 117,genes
R3172 T10829 T10807 nsubjpass genes,shared
R3173 T10830 T10807 auxpass were,shared
R3174 T10831 T10807 agent by,shared
R3175 T10832 T10833 det both,lists
R3176 T10833 T10831 pobj lists,by
R3177 T10834 T10835 punct (,file
R3178 T10835 T10807 parataxis file,shared
R3179 T10836 T10835 amod Additional,file
R3180 T10837 T10835 nummod 3,file
R3181 T10838 T10835 punct ),file
R3182 T10839 T10807 punct .,shared
R3183 T10841 T10842 nsubj Figure,visualises
R3184 T10843 T10841 nummod 3,Figure
R3185 T10844 T10842 dobj positions,visualises
R3186 T10845 T10844 prep of,positions
R3187 T10846 T10847 det the,genes
R3188 T10847 T10845 pobj genes,of
R3189 T10848 T10847 nummod 117,genes
R3190 T10849 T10847 acl retrieved,genes
R3191 T10850 T10849 prep from,retrieved
R3192 T10851 T10850 pobj Ensembl,from
R3193 T10852 T10853 punct [,30
R3194 T10853 T10849 parataxis 30,retrieved
R3195 T10854 T10853 punct ],30
R3196 T10855 T10842 prep in,visualises
R3197 T10856 T10855 pobj relation,in
R3198 T10857 T10856 prep to,relation
R3199 T10858 T10859 det the,QTL
R3201 T10860 T10859 nummod 8,QTL
R3202 T10861 T10862 amod small,effect
R3203 T10862 T10859 compound effect,QTL
R3204 T10863 T10862 punct -,effect
R3205 T10864 T10842 punct .,visualises
R3206 T10866 T10867 det The,loci
R3207 T10867 T10869 nsubjpass loci,located
R3208 T10868 T10867 nummod eight,loci
R3209 T10870 T10869 auxpass were,located
R3210 T10871 T10869 prep on,located
R3211 T10872 T10873 nummod 7,chromosomes
R3212 T10873 T10871 pobj chromosomes,on
R3213 T10874 T10873 punct ", ",chromosomes
R3214 T10875 T10873 appos 5,chromosomes
R3215 T10876 T10875 punct ", ",5
R3216 T10877 T10875 conj 6,5
R3217 T10878 T10877 punct ", ",6
R3218 T10879 T10877 conj 7,6
R3219 T10880 T10879 punct ", ",7
R3220 T10881 T10879 conj 10,7
R3221 T10882 T10881 punct ", ",10
R3222 T10883 T10881 conj 11,10
R3223 T10884 T10883 punct ", ",11
R3224 T10885 T10883 conj 16,11
R3225 T10886 T10885 cc and,16
R3226 T10887 T10885 conj 17,16
R3227 T10888 T10869 punct .,located
R3228 T10890 T10891 mark Since,are
R3229 T10891 T10900 advcl are,used
R3230 T10892 T10893 det the,intervals
R3231 T10893 T10891 nsubj intervals,are
R3232 T10894 T10893 compound confidence,intervals
R3233 T10895 T10893 prep of,intervals
R3234 T10896 T10895 pobj QTL,of
R3235 T10897 T10893 prep in,intervals
R3236 T10898 T10899 compound F2,progeny
R3237 T10899 T10897 pobj progeny,in
R3238 T10901 T10902 quantmod around,20
R3239 T10902 T10903 nummod 20,cM
R3240 T10903 T10891 attr cM,are
R3241 T10904 T10905 punct [,26
R3242 T10905 T10891 parataxis 26,are
R3243 T10906 T10905 punct ],26
R3244 T10907 T10900 punct ", ",used
R3245 T10908 T10900 nsubj we,used
R3246 T10909 T10910 nummod 40,Mb
R3247 T10910 T10900 dobj Mb,used
R3248 T10911 T10900 prep as,used
R3249 T10912 T10913 det the,intervals
R3250 T10913 T10911 pobj intervals,as
R3251 T10914 T10913 compound confidence,intervals
R3252 T10915 T10913 prep for,intervals
R3253 T10916 T10917 det all,loci
R3254 T10917 T10915 pobj loci,for
R3255 T10918 T10900 punct .,used
R3256 T10920 T10921 compound Twenty,one
R3257 T10921 T10923 nummod one,genes
R3258 T10922 T10921 punct -,one
R3259 T10923 T10924 nsubjpass genes,located
R3260 T10925 T10924 auxpass were,located
R3261 T10926 T10924 prep in,located
R3262 T10927 T10928 det the,intervals
R3263 T10928 T10926 pobj intervals,in
R3264 T10929 T10928 compound confidence,intervals
R3265 T10930 T10928 prep of,intervals
R3266 T10931 T10932 quantmod six,eight
R3267 T10932 T10935 nummod eight,QTL
R3268 T10933 T10932 quantmod of,eight
R3269 T10934 T10932 quantmod the,eight
R3270 T10935 T10930 pobj QTL,of
R3271 T10936 T10924 punct .,located
R3272 T10938 T10939 nsubj We,located
R3273 T10940 T10941 nummod 5,genes
R3274 T10941 T10939 dobj genes,located
R3275 T10942 T10940 punct ", ",5
R3276 T10943 T10940 conj 4,5
R3277 T10944 T10943 punct ", ",4
R3278 T10945 T10943 conj 2,4
R3279 T10946 T10945 punct ", ",2
R3280 T10947 T10945 conj 1,2
R3281 T10948 T10947 punct ", ",1
R3282 T10949 T10947 conj 3,1
R3283 T10950 T10949 cc and,3
R3284 T10951 T10949 conj 6,3
R3285 T10952 T10941 amod potential,genes
R3286 T10953 T10941 compound candidate,genes
R3287 T10954 T10939 prep within,located
R3288 T10955 T10956 det the,intervals
R3289 T10956 T10954 pobj intervals,within
R3290 T10957 T10956 compound confidence,intervals
R3291 T10958 T10956 prep of,intervals
R3292 T10959 T10960 nmod loci,1
R3293 T10960 T10958 pobj 1,of
R3294 T10961 T10960 punct ", ",1
R3295 T10962 T10960 conj 2,1
R3296 T10963 T10962 punct ", ",2
R3297 T10964 T10962 conj 3,2
R3298 T10965 T10964 punct ", ",3
R3299 T10966 T10964 conj 5,3
R3300 T10967 T10966 punct ", ",5
R3301 T10968 T10966 conj 6,5
R3302 T10969 T10968 cc and,6
R3303 T10970 T10968 conj 8,6
R3304 T10971 T10939 punct ", ",located
R3305 T10972 T10939 advmod respectively,located
R3306 T10973 T10939 punct ", ",located
R3307 T10974 T10975 mark while,identified
R3309 T10976 T10977 det no,gene
R3310 T10977 T10975 nsubjpass gene,identified
R3311 T10978 T10977 compound candidate,gene
R3312 T10979 T10975 auxpass was,identified
R3313 T10980 T10975 prep for,identified
R3314 T10981 T10982 nmod loci,4
R3315 T10982 T10980 pobj 4,for
R3316 T10983 T10982 cc and,4
R3317 T10984 T10982 conj 7,4
R3318 T10985 T10939 punct .,located
R3319 T10987 T10988 nsubj Table,summarises
R3320 T10989 T10987 nummod 3,Table
R3321 T10990 T10991 det the,genes
R3322 T10991 T10988 dobj genes,summarises
R3323 T10992 T10991 nummod 21,genes
R3324 T10993 T10991 compound candidate,genes
R3325 T10994 T10991 acl identified,genes
R3326 T10995 T10994 prep in,identified
R3327 T10996 T10997 det this,study
R3328 T10997 T10995 pobj study,in
R3329 T10998 T10988 punct .,summarises
R3330 T11000 T11001 nummod Two,genes
R3331 T11001 T11002 nsubjpass genes,upregulated
R3332 T11003 T11001 punct ", ",genes
R3333 T11004 T11001 appos hspa1a,genes
R3334 T11005 T11004 cc and,hspa1a
R3335 T11006 T11004 conj Oas1a,hspa1a
R3336 T11007 T11002 punct ", ",upregulated
R3337 T11008 T11002 auxpass were,upregulated
R3338 T11009 T11002 prep at,upregulated
R3339 T11010 T11011 det the,phase
R3340 T11011 T11009 pobj phase,at
R3341 T11012 T11011 compound OA,phase
R3342 T11013 T11011 prep of,phase
R3343 T11014 T11013 pobj CIA,of
R3344 T11015 T11002 cc and,upregulated
R3345 T11016 T11017 nsubjpass Oas1a,upregulated
R3346 T11017 T11002 conj upregulated,upregulated
R3347 T11018 T11017 auxpass was,upregulated
R3348 T11019 T11017 advmod also,upregulated
R3349 T11020 T11017 prep at,upregulated
R3350 T11021 T11022 det the,phase
R3351 T11022 T11020 pobj phase,at
R3352 T11023 T11022 compound PI,phase
R3353 T11024 T11017 punct .,upregulated
R3354 T11026 T11027 prep Except,downregulated
R3355 T11028 T11026 prep for,Except
R3356 T11029 T11030 det these,genes
R3357 T11030 T11028 pobj genes,for
R3358 T11031 T11030 nummod two,genes
R3359 T11032 T11027 punct ", ",downregulated
R3360 T11033 T11034 det all,genes
R3361 T11034 T11027 nsubjpass genes,downregulated
R3362 T11035 T11034 amod other,genes
R3363 T11036 T11034 nummod 19,genes
R3364 T11037 T11027 auxpass were,downregulated
R3365 T11038 T11027 prep at,downregulated
R3366 T11039 T11040 det the,phase
R3367 T11040 T11038 pobj phase,at
R3368 T11041 T11040 amod chronic,phase
R3369 T11042 T11040 prep of,phase
R3370 T11043 T11042 pobj CIA,of
R3371 T11044 T11027 punct .,downregulated
R3372 T11046 T11047 det All,genes
R3373 T11047 T11048 nsubj genes,showed
R3374 T11049 T11047 punct ", ",genes
R3375 T11050 T11047 prep except,genes
R3376 T11051 T11050 pobj hspa1a,except
R3377 T11052 T11048 punct ", ",showed
R3378 T11053 T11054 compound expression,differences
R3379 T11054 T11048 dobj differences,showed
R3380 T11055 T11054 prep between,differences
R3381 T11056 T11057 det the,strains
R3382 T11057 T11055 pobj strains,between
R3383 T11058 T11057 nummod two,strains
R3384 T11059 T11048 prep at,showed
R3385 T11060 T11061 det the,phase
R3386 T11061 T11059 pobj phase,at
R3387 T11062 T11061 compound NC,phase
R3388 T11063 T11048 punct .,showed
R3389 T11065 T11066 nummod Five,genes
R3390 T11066 T11067 nsubjpass genes,expressed
R3391 T11068 T11067 auxpass were,expressed
R3392 T11069 T11067 advmod differentially,expressed
R3393 T11070 T11067 prep at,expressed
R3394 T11071 T11072 det all,phases
R3395 T11072 T11070 pobj phases,at
R3396 T11073 T11072 prep of,phases
R3397 T11074 T11073 pobj CIA,of
R3398 T11075 T11067 punct ", ",expressed
R3399 T11076 T11067 prep including,expressed
R3400 T11077 T11078 compound H2,Q10
R3401 T11078 T11076 pobj Q10,including
R3402 T11079 T11078 punct -,Q10
R3403 T11080 T11078 punct ", ",Q10
R3404 T11081 T11078 conj Mapk14,Q10
R3405 T11082 T11081 punct ", ",Mapk14
R3406 T11083 T11081 conj Pscd1,Mapk14
R3407 T11084 T11083 punct ", ",Pscd1
R3408 T11085 T11083 conj Kpnb1,Pscd1
R3409 T11086 T11085 cc and,Kpnb1
R3410 T11087 T11085 conj Wdr1,Kpnb1
R3411 T11088 T11067 punct .,expressed
R3412 T11090 T11091 prep Among,had
R3413 T11092 T11093 det these,genes
R3414 T11093 T11090 pobj genes,Among
R3415 T11094 T11093 nummod five,genes
R3416 T11095 T11091 punct ", ",had
R3417 T11096 T11097 compound H2,Q10
R3418 T11097 T11091 nsubj Q10,had
R3419 T11098 T11097 punct -,Q10
R3420 T11099 T11100 det a,expression
R3421 T11100 T11091 dobj expression,had
R3422 T11101 T11102 advmod consistently,higher
R3423 T11102 T11100 amod higher,expression
R3424 T11103 T11091 prep in,had
R3425 T11104 T11105 det the,DBA
R3426 T11105 T11103 pobj DBA,in
R3427 T11106 T11105 punct /,DBA
R3428 T11107 T11105 nummod 1,DBA
R3429 T11108 T11091 prep than,had
R3430 T11109 T11110 det the,strain
R3431 T11110 T11108 pobj strain,than
R3432 T11111 T11112 compound FVB,N
R3433 T11112 T11110 compound N,strain
R3434 T11113 T11112 punct /,N
R3435 T11114 T11091 prep in,had
R3436 T11115 T11116 det all,phases
R3437 T11116 T11114 pobj phases,in
R3438 T11117 T11116 compound CIA,phases
R3439 T11118 T11091 punct ", ",had
R3440 T11119 T11120 mark while,had
R3442 T11121 T11122 det the,genes
R3443 T11122 T11120 nsubj genes,had
R3444 T11123 T11122 amod other,genes
R3445 T11124 T11122 nummod four,genes
R3446 T11125 T11126 det a,expression
R3447 T11126 T11120 dobj expression,had
R3448 T11127 T11126 amod higher,expression
R3449 T11128 T11120 prep in,had
R3450 T11129 T11130 det the,strain
R3451 T11130 T11128 pobj strain,in
R3452 T11131 T11130 nmod DBA,strain
R3453 T11132 T11131 punct /,DBA
R3454 T11133 T11131 nummod 1,DBA
R3455 T11134 T11120 prep at,had
R3456 T11135 T11136 det the,stages
R3457 T11136 T11134 pobj stages,at
R3458 T11137 T11136 amod early,stages
R3459 T11138 T11120 punct ", ",had
R3460 T11139 T11120 prep including,had
R3461 T11140 T11139 pobj NC,including
R3462 T11141 T11140 punct ", ",NC
R3463 T11142 T11140 conj PI,NC
R3464 T11143 T11142 cc and,PI
R3465 T11144 T11142 conj OA,PI
R3466 T11145 T11120 punct ", ",had
R3467 T11146 T11120 cc but,had
R3468 T11147 T11148 det a,expression
R3469 T11148 T11120 conj expression,had
R3470 T11149 T11148 amod lower,expression
R3471 T11150 T11148 prep at,expression
R3472 T11151 T11152 det the,phase
R3473 T11152 T11150 pobj phase,at
R3474 T11153 T11152 amod chronic,phase
R3475 T11154 T11091 punct .,had
R3476 T11156 T11157 compound GO,analysis
R3477 T11157 T11160 nsubj analysis,revealed
R3478 T11158 T11157 compound term,analysis
R3479 T11159 T11157 compound classification,analysis
R3480 T11161 T11162 mark that,enriched
R3481 T11162 T11160 ccomp enriched,revealed
R3482 T11163 T11164 det the,cluster
R3483 T11164 T11162 nsubjpass cluster,enriched
R3484 T11165 T11164 amod functional,cluster
R3485 T11166 T11164 prep of,cluster
R3486 T11167 T11168 compound protein,cascade
R3487 T11168 T11166 pobj cascade,of
R3488 T11169 T11168 compound kinase,cascade
R3489 T11170 T11162 auxpass was,enriched
R3490 T11171 T11162 advmod significantly,enriched
R3491 T11172 T11162 prep in,enriched
R3492 T11173 T11174 det the,genes
R3493 T11174 T11172 pobj genes,in
R3494 T11175 T11174 nummod 21,genes
R3495 T11176 T11174 compound candidate,genes
R3496 T11177 T11160 punct .,revealed
R3497 T11179 T11180 det This,cluster
R3498 T11180 T11182 nsubj cluster,contained
R3499 T11181 T11180 amod functional,cluster
R3500 T11183 T11184 nummod four,genes
R3501 T11184 T11182 dobj genes,contained
R3502 T11185 T11184 punct ", ",genes
R3503 T11186 T11184 prep including,genes
R3504 T11187 T11186 pobj Mapk14,including
R3505 T11188 T11187 punct ", ",Mapk14
R3506 T11189 T11187 conj Mapk8ip3,Mapk14
R3507 T11190 T11189 punct ", ",Mapk8ip3
R3508 T11191 T11189 conj Stat5a,Mapk8ip3
R3509 T11192 T11191 cc and,Stat5a
R3510 T11193 T11191 conj Gna12,Stat5a
R3511 T11194 T11182 punct .,contained
R3200 T10859 T10857 pobj QTL,to
R3308 T10975 T10939 advcl identified,located
R3441 T11120 T11091 advcl had,had

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10760 1288-1293 SO_EXT:0000704 denotes genes
T10761 1314-1323 GO:0010467 denotes expressed
T10762 1356-1362 PR_EXT:000008409 denotes H2-Q10
T10763 1364-1370 PR_EXT:000003107 denotes Mapk14
T10764 1372-1377 PR_EXT:000006153 denotes Pscd1
T10765 1379-1384 PR_EXT:000009439 denotes Kpnb1
T10730 10-15 SO_EXT:0000704 denotes genes
T10731 37-40 SO_EXT:0000771 denotes QTL
T10732 116-119 SO_EXT:0000771 denotes QTL
T10733 176-185 GO:0010467 denotes expressed
T10734 186-191 SO_EXT:0000704 denotes genes
T10735 241-250 GO:0010467 denotes expressed
T10736 251-256 SO_EXT:0000704 denotes genes
T10737 262-267 SO_EXT:0000704 denotes genes
T10738 356-361 SO_EXT:0000704 denotes genes
T10739 424-427 SO_EXT:0000771 denotes QTL
T10740 462-473 GO_SO_EXT:chromosome denotes chromosomes
T10741 537-540 SO_EXT:0000771 denotes QTL
T10742 590-591 CHEBI_SO_EXT:base denotes b
T10743 645-650 SO_EXT:0000704 denotes genes
T10744 712-715 SO_EXT:0000771 denotes QTL
T10745 768-773 SO_EXT:0000704 denotes genes
T10746 868-872 SO_EXT:0000704 denotes gene
T10747 942-947 SO_EXT:0000704 denotes genes
T10748 978-983 SO_EXT:0000704 denotes genes
T10749 985-991 PR_EXT:000008871 denotes hspa1a
T10750 996-1001 PR_EXT:000012101 denotes Oas1a
T10751 1008-1019 GO_EXT:positive_regulation denotes upregulated
T10752 1047-1052 PR_EXT:000012101 denotes Oas1a
T10753 1062-1073 GO_EXT:positive_regulation denotes upregulated
T10754 1112-1117 SO_EXT:0000704 denotes genes
T10755 1132-1137 SO_EXT:0000704 denotes genes
T10756 1143-1156 GO_EXT:negative_regulation denotes downregulated
T10757 1190-1195 SO_EXT:0000704 denotes genes
T10758 1204-1210 PR_EXT:000008871 denotes hspa1a
T10759 1219-1229 GO:0010467 denotes expression
T10766 1389-1393 PR_EXT:000017387 denotes Wdr1
T10767 1412-1417 SO_EXT:0000704 denotes genes
T10768 1419-1425 PR_EXT:000008409 denotes H2-Q10
T10769 1452-1462 GO:0010467 denotes expression
T10770 1538-1543 SO_EXT:0000704 denotes genes
T10771 1557-1567 GO:0010467 denotes expression
T10772 1646-1656 GO:0010467 denotes expression
T10773 1751-1758 CHEBI_PR_EXT:protein denotes protein
T10774 1751-1765 GO_EXT:0004672 denotes protein kinase
T10775 1821-1826 SO_EXT:0000704 denotes genes
T10776 1867-1872 SO_EXT:0000704 denotes genes
T10777 1884-1890 PR_EXT:000003107 denotes Mapk14
T10778 1892-1900 PR_EXT:000010162 denotes Mapk8ip3
T10779 1902-1908 PR_EXT:000002091 denotes Stat5a
T10780 1913-1918 PR_EXT:000008081 denotes Gna12

2_test

Id Subject Object Predicate Lexical cue
17244351-2563713-4361139 573-575 2563713 denotes 26

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10686 10-15 SO:0000704 denotes genes
T10687 37-40 SO:0000771 denotes QTL
T10688 116-119 SO:0000771 denotes QTL
T10689 176-185 GO:0010467 denotes expressed
T10690 186-191 SO:0000704 denotes genes
T10691 241-250 GO:0010467 denotes expressed
T10692 251-256 SO:0000704 denotes genes
T10693 262-267 SO:0000704 denotes genes
T10694 356-361 SO:0000704 denotes genes
T10695 424-427 SO:0000771 denotes QTL
T10696 537-540 SO:0000771 denotes QTL
T10697 645-650 SO:0000704 denotes genes
T10698 712-715 SO:0000771 denotes QTL
T10699 768-773 SO:0000704 denotes genes
T10700 868-872 SO:0000704 denotes gene
T10701 942-947 SO:0000704 denotes genes
T10702 978-983 SO:0000704 denotes genes
T10703 985-991 PR:000008871 denotes hspa1a
T10704 996-1001 PR:000012101 denotes Oas1a
T10705 1047-1052 PR:000012101 denotes Oas1a
T10706 1112-1117 SO:0000704 denotes genes
T10707 1132-1137 SO:0000704 denotes genes
T10708 1190-1195 SO:0000704 denotes genes
T10709 1204-1210 PR:000008871 denotes hspa1a
T10710 1219-1229 GO:0010467 denotes expression
T10711 1288-1293 SO:0000704 denotes genes
T10712 1314-1323 GO:0010467 denotes expressed
T10713 1356-1362 PR:000008409 denotes H2-Q10
T10714 1364-1370 PR:000003107 denotes Mapk14
T10715 1372-1377 PR:000006153 denotes Pscd1
T10716 1379-1384 PR:000009439 denotes Kpnb1
T10717 1389-1393 PR:000017387 denotes Wdr1
T10718 1412-1417 SO:0000704 denotes genes
T10719 1419-1425 PR:000008409 denotes H2-Q10
T10720 1452-1462 GO:0010467 denotes expression
T10721 1538-1543 SO:0000704 denotes genes
T10722 1557-1567 GO:0010467 denotes expression
T10723 1646-1656 GO:0010467 denotes expression
T10724 1821-1826 SO:0000704 denotes genes
T10725 1867-1872 SO:0000704 denotes genes
T10726 1884-1890 PR:000003107 denotes Mapk14
T10727 1892-1900 PR:000010162 denotes Mapk8ip3
T10728 1902-1908 PR:000002091 denotes Stat5a
T10729 1913-1918 PR:000008081 denotes Gna12