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PMC:1860061 / 13735-14757 JSONTXT

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Id Subject Object Predicate Lexical cue
T8421 0-2 TO denotes To
T8422 3-9 VB denotes search
T8423 65-74 VBD denotes performed
T8424 10-13 IN denotes for
T8425 14-20 NN denotes strain
T8426 21-29 JJ denotes specific
T8427 20-21 HYPH denotes -
T8428 55-60 NNS denotes genes
T8429 30-44 RB denotes differentially
T8430 45-54 VBN denotes expressed
T8431 60-62 , denotes ,
T8432 62-64 PRP denotes we
T8433 75-86 NNS denotes comparisons
T8434 87-89 IN denotes of
T8435 90-94 NN denotes gene
T8436 95-105 NN denotes expression
T8437 106-113 IN denotes between
T8438 114-117 DT denotes the
T8439 134-141 NNS denotes strains
T8440 118-121 NN denotes DBA
T8441 121-122 HYPH denotes /
T8442 122-123 CD denotes 1
T8443 124-127 CC denotes and
T8444 128-131 NN denotes FVB
T8445 132-133 NN denotes N
T8446 131-132 HYPH denotes /
T8447 142-144 IN denotes at
T8448 145-148 DT denotes all
T8449 154-160 NNS denotes phases
T8450 149-153 CD denotes four
T8451 161-163 IN denotes of
T8452 164-167 NN denotes CIA
T8453 167-169 , denotes ,
T8454 169-178 VBG denotes including
T8455 179-181 NN denotes NC
T8456 181-183 , denotes ,
T8457 183-185 NN denotes PI
T8458 185-187 , denotes ,
T8459 187-189 NN denotes OA
T8460 190-193 CC denotes and
T8461 194-196 NN denotes CA
T8462 196-197 . denotes .
T8463 197-303 sentence denotes For the naive mice without immunisation, 361 genes were differentially expressed between the two strains.
T8464 198-201 IN denotes For
T8465 269-278 VBN denotes expressed
T8466 202-205 DT denotes the
T8467 212-216 NNS denotes mice
T8468 206-211 JJ denotes naive
T8469 217-224 IN denotes without
T8470 225-237 NN denotes immunisation
T8471 237-239 , denotes ,
T8472 239-242 CD denotes 361
T8473 243-248 NNS denotes genes
T8474 249-253 VBD denotes were
T8475 254-268 RB denotes differentially
T8476 279-286 IN denotes between
T8477 287-290 DT denotes the
T8478 295-302 NNS denotes strains
T8479 291-294 CD denotes two
T8480 302-303 . denotes .
T8481 303-430 sentence denotes On day 10 after immunisation, when both strains did not show any sign of the disease, 141 genes were differentially expressed.
T8482 304-306 IN denotes On
T8483 420-429 VBN denotes expressed
T8484 307-310 NN denotes day
T8485 311-313 CD denotes 10
T8486 314-319 IN denotes after
T8487 320-332 NN denotes immunisation
T8488 332-334 , denotes ,
T8489 334-338 WRB denotes when
T8490 360-364 VB denotes show
T8491 339-343 DT denotes both
T8492 344-351 NNS denotes strains
T8493 352-355 VBD denotes did
T8494 356-359 RB denotes not
T8495 365-368 DT denotes any
T8496 369-373 NN denotes sign
T8497 374-376 IN denotes of
T8498 377-380 DT denotes the
T8499 381-388 NN denotes disease
T8500 388-390 , denotes ,
T8501 390-393 CD denotes 141
T8502 394-399 NNS denotes genes
T8503 400-404 VBD denotes were
T8504 405-419 RB denotes differentially
T8505 429-430 . denotes .
T8506 430-593 sentence denotes After DBA/1 mice developed CIA, 184 and 85 differentially expressed genes were identified between these two strains at the onset and chronic phases, respectively.
T8507 431-436 IN denotes After
T8508 448-457 VBD denotes developed
T8509 437-440 NN denotes DBA
T8510 443-447 NNS denotes mice
T8511 440-441 HYPH denotes /
T8512 441-442 CD denotes 1
T8513 510-520 VBN denotes identified
T8514 458-461 NN denotes CIA
T8515 461-463 , denotes ,
T8516 463-466 CD denotes 184
T8517 499-504 NNS denotes genes
T8518 467-470 CC denotes and
T8519 471-473 CD denotes 85
T8520 474-488 RB denotes differentially
T8521 489-498 VBN denotes expressed
T8522 505-509 VBD denotes were
T8523 521-528 IN denotes between
T8524 529-534 DT denotes these
T8525 539-546 NNS denotes strains
T8526 535-538 CD denotes two
T8527 547-549 IN denotes at
T8528 550-553 DT denotes the
T8529 572-578 NNS denotes phases
T8530 554-559 NN denotes onset
T8531 560-563 CC denotes and
T8532 564-571 JJ denotes chronic
T8533 578-580 , denotes ,
T8534 580-592 RB denotes respectively
T8535 592-593 . denotes .
T8536 593-761 sentence denotes When the lists of the differentially expressed genes at the four phases were merged and overlapping genes were excluded, 509 genes were identified (Additional file 1).
T8537 594-598 WRB denotes When
T8538 671-677 VBN denotes merged
T8539 599-602 DT denotes the
T8540 603-608 NNS denotes lists
T8541 609-611 IN denotes of
T8542 612-615 DT denotes the
T8543 641-646 NNS denotes genes
T8544 616-630 RB denotes differentially
T8545 631-640 VBN denotes expressed
T8546 647-649 IN denotes at
T8547 650-653 DT denotes the
T8548 659-665 NNS denotes phases
T8549 654-658 CD denotes four
T8550 666-670 VBD denotes were
T8551 730-740 VBN denotes identified
T8552 678-681 CC denotes and
T8553 682-693 VBG denotes overlapping
T8554 694-699 NNS denotes genes
T8555 705-713 VBN denotes excluded
T8556 700-704 VBD denotes were
T8557 713-715 , denotes ,
T8558 715-718 CD denotes 509
T8559 719-724 NNS denotes genes
T8560 725-729 VBD denotes were
T8561 741-742 -LRB- denotes (
T8562 753-757 NN denotes file
T8563 742-752 JJ denotes Additional
T8564 758-759 CD denotes 1
T8565 759-760 -RRB- denotes )
T8566 760-761 . denotes .
T8567 761-861 sentence denotes Twenty-one genes consistently showed differential expression between the two strains at all phases.
T8568 762-768 CD denotes Twenty
T8569 769-772 CD denotes one
T8570 768-769 HYPH denotes -
T8571 773-778 NNS denotes genes
T8572 792-798 VBD denotes showed
T8573 779-791 RB denotes consistently
T8574 799-811 JJ denotes differential
T8575 812-822 NN denotes expression
T8576 823-830 IN denotes between
T8577 831-834 DT denotes the
T8578 839-846 NNS denotes strains
T8579 835-838 CD denotes two
T8580 847-849 IN denotes at
T8581 850-853 DT denotes all
T8582 854-860 NNS denotes phases
T8583 860-861 . denotes .
T8584 861-1022 sentence denotes Besides these 21 genes, only 3 additional genes were strain-specific differentially expressed during the 3 phases after CIA induction (PI, OA and CA; Figure 1).
T8585 862-869 IN denotes Besides
T8586 946-955 VBN denotes expressed
T8587 870-875 DT denotes these
T8588 879-884 NNS denotes genes
T8589 876-878 CD denotes 21
T8590 884-886 , denotes ,
T8591 886-890 RB denotes only
T8592 904-909 NNS denotes genes
T8593 891-892 CD denotes 3
T8594 893-903 JJ denotes additional
T8595 910-914 VBD denotes were
T8596 915-921 NN denotes strain
T8597 922-930 RB denotes specific
T8598 921-922 HYPH denotes -
T8599 931-945 RB denotes differentially
T8600 956-962 IN denotes during
T8601 963-966 DT denotes the
T8602 969-975 NNS denotes phases
T8603 967-968 CD denotes 3
T8604 976-981 IN denotes after
T8605 982-985 NN denotes CIA
T8606 986-995 NN denotes induction
T8607 996-997 -LRB- denotes (
T8608 1012-1018 NN denotes Figure
T8609 997-999 NN denotes PI
T8610 999-1001 , denotes ,
T8611 1001-1003 NN denotes OA
T8612 1004-1007 CC denotes and
T8613 1008-1010 NN denotes CA
T8614 1010-1011 : denotes ;
T8615 1019-1020 CD denotes 1
T8616 1020-1021 -RRB- denotes )
T8617 1021-1022 . denotes .
R2538 T8421 T8422 aux To,search
R2539 T8422 T8423 advcl search,performed
R2540 T8424 T8422 prep for,search
R2541 T8425 T8426 npadvmod strain,specific
R2542 T8426 T8428 amod specific,genes
R2543 T8427 T8426 punct -,specific
R2545 T8429 T8430 advmod differentially,expressed
R2546 T8430 T8428 amod expressed,genes
R2547 T8431 T8423 punct ", ",performed
R2548 T8432 T8423 nsubj we,performed
R2549 T8433 T8423 dobj comparisons,performed
R2550 T8434 T8433 prep of,comparisons
R2551 T8435 T8436 compound gene,expression
R2552 T8436 T8434 pobj expression,of
R2553 T8437 T8433 prep between,comparisons
R2554 T8438 T8439 det the,strains
R2555 T8439 T8437 pobj strains,between
R2556 T8440 T8439 nmod DBA,strains
R2557 T8441 T8440 punct /,DBA
R2558 T8442 T8440 nummod 1,DBA
R2559 T8443 T8440 cc and,DBA
R2560 T8444 T8445 compound FVB,N
R2561 T8445 T8440 conj N,DBA
R2562 T8446 T8445 punct /,N
R2563 T8447 T8423 prep at,performed
R2564 T8448 T8449 det all,phases
R2565 T8449 T8447 pobj phases,at
R2566 T8450 T8449 nummod four,phases
R2567 T8451 T8449 prep of,phases
R2568 T8452 T8451 pobj CIA,of
R2569 T8453 T8449 punct ", ",phases
R2570 T8454 T8449 prep including,phases
R2571 T8455 T8454 pobj NC,including
R2572 T8456 T8455 punct ", ",NC
R2573 T8457 T8455 conj PI,NC
R2574 T8458 T8457 punct ", ",PI
R2575 T8459 T8457 conj OA,PI
R2576 T8460 T8459 cc and,OA
R2577 T8461 T8459 conj CA,OA
R2578 T8462 T8423 punct .,performed
R2579 T8464 T8465 prep For,expressed
R2580 T8466 T8467 det the,mice
R2581 T8467 T8464 pobj mice,For
R2582 T8468 T8467 amod naive,mice
R2583 T8469 T8467 prep without,mice
R2584 T8470 T8469 pobj immunisation,without
R2585 T8471 T8465 punct ", ",expressed
R2586 T8472 T8473 nummod 361,genes
R2587 T8473 T8465 nsubjpass genes,expressed
R2588 T8474 T8465 auxpass were,expressed
R2589 T8475 T8465 advmod differentially,expressed
R2590 T8476 T8465 prep between,expressed
R2591 T8477 T8478 det the,strains
R2592 T8478 T8476 pobj strains,between
R2593 T8479 T8478 nummod two,strains
R2594 T8480 T8465 punct .,expressed
R2595 T8482 T8483 prep On,expressed
R2596 T8484 T8482 pobj day,On
R2597 T8485 T8484 nummod 10,day
R2598 T8486 T8484 prep after,day
R2599 T8487 T8486 pobj immunisation,after
R2600 T8488 T8484 punct ", ",day
R2601 T8489 T8490 advmod when,show
R2602 T8490 T8484 relcl show,day
R2603 T8491 T8492 det both,strains
R2604 T8492 T8490 nsubj strains,show
R2605 T8493 T8490 aux did,show
R2606 T8494 T8490 neg not,show
R2607 T8495 T8496 det any,sign
R2608 T8496 T8490 dobj sign,show
R2609 T8497 T8496 prep of,sign
R2610 T8498 T8499 det the,disease
R2611 T8499 T8497 pobj disease,of
R2612 T8500 T8483 punct ", ",expressed
R2613 T8501 T8502 nummod 141,genes
R2614 T8502 T8483 nsubjpass genes,expressed
R2615 T8503 T8483 auxpass were,expressed
R2616 T8504 T8483 advmod differentially,expressed
R2617 T8505 T8483 punct .,expressed
R2618 T8507 T8508 mark After,developed
R2619 T8508 T8513 advcl developed,identified
R2620 T8509 T8510 nmod DBA,mice
R2621 T8510 T8508 nsubj mice,developed
R2622 T8511 T8509 punct /,DBA
R2623 T8512 T8509 nummod 1,DBA
R2624 T8514 T8508 dobj CIA,developed
R2625 T8515 T8513 punct ", ",identified
R2626 T8516 T8517 nummod 184,genes
R2627 T8517 T8513 nsubjpass genes,identified
R2628 T8518 T8516 cc and,184
R2629 T8519 T8516 conj 85,184
R2630 T8520 T8521 advmod differentially,expressed
R2631 T8521 T8517 amod expressed,genes
R2632 T8522 T8513 auxpass were,identified
R2633 T8523 T8513 prep between,identified
R2634 T8524 T8525 det these,strains
R2635 T8525 T8523 pobj strains,between
R2636 T8526 T8525 nummod two,strains
R2637 T8527 T8513 prep at,identified
R2638 T8528 T8529 det the,phases
R2639 T8529 T8527 pobj phases,at
R2640 T8530 T8529 nmod onset,phases
R2641 T8531 T8530 cc and,onset
R2642 T8532 T8530 conj chronic,onset
R2643 T8533 T8513 punct ", ",identified
R2644 T8534 T8513 advmod respectively,identified
R2645 T8535 T8513 punct .,identified
R2646 T8537 T8538 advmod When,merged
R2647 T8538 T8551 advcl merged,identified
R2648 T8539 T8540 det the,lists
R2649 T8540 T8538 nsubjpass lists,merged
R2650 T8541 T8540 prep of,lists
R2651 T8542 T8543 det the,genes
R2652 T8543 T8541 pobj genes,of
R2653 T8544 T8545 advmod differentially,expressed
R2654 T8545 T8543 amod expressed,genes
R2655 T8546 T8540 prep at,lists
R2656 T8547 T8548 det the,phases
R2657 T8548 T8546 pobj phases,at
R2658 T8549 T8548 nummod four,phases
R2659 T8550 T8538 auxpass were,merged
R2660 T8552 T8538 cc and,merged
R2661 T8553 T8554 amod overlapping,genes
R2662 T8554 T8555 nsubjpass genes,excluded
R2663 T8555 T8538 conj excluded,merged
R2664 T8556 T8555 auxpass were,excluded
R2665 T8557 T8551 punct ", ",identified
R2666 T8558 T8559 nummod 509,genes
R2667 T8559 T8551 nsubjpass genes,identified
R2668 T8560 T8551 auxpass were,identified
R2669 T8561 T8562 punct (,file
R2670 T8562 T8551 parataxis file,identified
R2671 T8563 T8562 amod Additional,file
R2672 T8564 T8562 nummod 1,file
R2673 T8565 T8562 punct ),file
R2674 T8566 T8551 punct .,identified
R2675 T8568 T8569 compound Twenty,one
R2676 T8569 T8571 nummod one,genes
R2677 T8570 T8569 punct -,one
R2678 T8571 T8572 nsubj genes,showed
R2679 T8573 T8572 advmod consistently,showed
R2680 T8574 T8575 amod differential,expression
R2681 T8575 T8572 dobj expression,showed
R2682 T8576 T8572 prep between,showed
R2683 T8577 T8578 det the,strains
R2684 T8578 T8576 pobj strains,between
R2685 T8579 T8578 nummod two,strains
R2686 T8580 T8572 prep at,showed
R2687 T8581 T8582 det all,phases
R2688 T8582 T8580 pobj phases,at
R2689 T8583 T8572 punct .,showed
R2690 T8585 T8586 prep Besides,expressed
R2691 T8587 T8588 det these,genes
R2692 T8588 T8585 pobj genes,Besides
R2693 T8589 T8588 nummod 21,genes
R2694 T8590 T8586 punct ", ",expressed
R2695 T8591 T8592 advmod only,genes
R2697 T8593 T8592 nummod 3,genes
R2698 T8594 T8592 amod additional,genes
R2699 T8595 T8586 auxpass were,expressed
R2700 T8596 T8597 npadvmod strain,specific
R2701 T8597 T8586 advmod specific,expressed
R2702 T8598 T8597 punct -,specific
R2703 T8599 T8586 advmod differentially,expressed
R2704 T8600 T8586 prep during,expressed
R2705 T8601 T8602 det the,phases
R2706 T8602 T8600 pobj phases,during
R2707 T8603 T8602 nummod 3,phases
R2708 T8604 T8602 prep after,phases
R2709 T8605 T8606 compound CIA,induction
R2710 T8606 T8604 pobj induction,after
R2711 T8607 T8608 punct (,Figure
R2712 T8608 T8586 parataxis Figure,expressed
R2713 T8609 T8608 dep PI,Figure
R2714 T8610 T8609 punct ", ",PI
R2715 T8611 T8609 conj OA,PI
R2716 T8612 T8611 cc and,OA
R2717 T8613 T8611 conj CA,OA
R2718 T8614 T8608 punct ;,Figure
R2719 T8615 T8608 nummod 1,Figure
R2720 T8616 T8608 punct ),Figure
R2721 T8617 T8586 punct .,expressed
R2544 T8428 T8424 pobj genes,for
R2696 T8592 T8586 nsubjpass genes,expressed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8293 45-54 GO:0010467 denotes expressed
T8294 55-60 SO_EXT:0000704 denotes genes
T8295 90-94 SO_EXT:0000704 denotes gene
T8296 90-105 GO:0010467 denotes gene expression
T8297 212-216 NCBITaxon:10088 denotes mice
T8298 243-248 SO_EXT:0000704 denotes genes
T8299 269-278 GO:0010467 denotes expressed
T8300 394-399 SO_EXT:0000704 denotes genes
T8301 420-429 GO:0010467 denotes expressed
T8302 443-447 NCBITaxon:10088 denotes mice
T8303 489-498 GO:0010467 denotes expressed
T8304 499-504 SO_EXT:0000704 denotes genes
T8305 631-640 GO:0010467 denotes expressed
T8306 641-646 SO_EXT:0000704 denotes genes
T8307 694-699 SO_EXT:0000704 denotes genes
T8308 719-724 SO_EXT:0000704 denotes genes
T8309 773-778 SO_EXT:0000704 denotes genes
T8310 812-822 GO:0010467 denotes expression
T8311 879-884 SO_EXT:0000704 denotes genes
T8312 904-909 SO_EXT:0000704 denotes genes
T8313 946-955 GO:0010467 denotes expressed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8265 45-54 GO:0010467 denotes expressed
T8266 55-60 SO:0000704 denotes genes
T8267 90-94 SO:0000704 denotes gene
T8268 90-105 GO:0010467 denotes gene expression
T8269 212-216 NCBITaxon:10088 denotes mice
T8270 243-248 SO:0000704 denotes genes
T8271 269-278 GO:0010467 denotes expressed
T8272 394-399 SO:0000704 denotes genes
T8273 420-429 GO:0010467 denotes expressed
T8274 443-447 NCBITaxon:10088 denotes mice
T8275 489-498 GO:0010467 denotes expressed
T8276 499-504 SO:0000704 denotes genes
T8277 631-640 GO:0010467 denotes expressed
T8278 641-646 SO:0000704 denotes genes
T8279 694-699 SO:0000704 denotes genes
T8280 719-724 SO:0000704 denotes genes
T8281 773-778 SO:0000704 denotes genes
T8282 812-822 GO:0010467 denotes expression
T8283 879-884 SO:0000704 denotes genes
T8284 904-909 SO:0000704 denotes genes
T8285 946-955 GO:0010467 denotes expressed