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PMC:1860061 / 13200-14757 JSONTXT

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Id Subject Object Predicate Lexical cue
T8319 31-40 VBN denotes expressed
T8320 46-140 sentence denotes We detected the gene expression profiles using three mice per group, which is a small number.
T8321 47-49 PRP denotes We
T8322 50-58 VBD denotes detected
T8314 0-6 NN denotes Strain
T8315 7-15 JJ denotes specific
T8316 6-7 HYPH denotes -
T8317 41-46 NNS denotes genes
T8318 16-30 RB denotes differentially
T8323 59-62 DT denotes the
T8324 79-87 NNS denotes profiles
T8325 63-67 NN denotes gene
T8326 68-78 NN denotes expression
T8327 88-93 VBG denotes using
T8328 94-99 CD denotes three
T8329 100-104 NNS denotes mice
T8330 105-108 IN denotes per
T8331 109-114 NN denotes group
T8332 114-116 , denotes ,
T8333 116-121 WDT denotes which
T8334 122-124 VBZ denotes is
T8335 125-126 DT denotes a
T8336 133-139 NN denotes number
T8337 127-132 JJ denotes small
T8338 139-140 . denotes .
T8339 140-272 sentence denotes Being aware of the importance of data reproducibility, we determined the coefficient of variation (CV) to measure data variability.
T8340 141-146 VBG denotes Being
T8341 199-209 VBD denotes determined
T8342 147-152 JJ denotes aware
T8343 153-155 IN denotes of
T8344 156-159 DT denotes the
T8345 160-170 NN denotes importance
T8346 171-173 IN denotes of
T8347 174-178 NNS denotes data
T8348 179-194 NN denotes reproducibility
T8349 194-196 , denotes ,
T8350 196-198 PRP denotes we
T8351 210-213 DT denotes the
T8352 214-225 NN denotes coefficient
T8353 226-228 IN denotes of
T8354 229-238 NN denotes variation
T8355 239-240 -LRB- denotes (
T8356 240-242 NN denotes CV
T8357 242-243 -RRB- denotes )
T8358 244-246 TO denotes to
T8359 247-254 VB denotes measure
T8360 255-259 NNS denotes data
T8361 260-271 NN denotes variability
T8362 271-272 . denotes .
T8363 272-363 sentence denotes The CV for each gene on the chip and the mean CV for the entire probe set were calculated.
T8364 273-276 DT denotes The
T8365 277-279 NN denotes CV
T8366 352-362 VBN denotes calculated
T8367 280-283 IN denotes for
T8368 284-288 DT denotes each
T8369 289-293 NN denotes gene
T8370 294-296 IN denotes on
T8371 297-300 DT denotes the
T8372 301-305 NN denotes chip
T8373 306-309 CC denotes and
T8374 310-313 DT denotes the
T8375 319-321 NN denotes CV
T8376 314-318 JJ denotes mean
T8377 322-325 IN denotes for
T8378 326-329 DT denotes the
T8379 337-342 NN denotes probe
T8380 330-336 JJ denotes entire
T8381 343-346 VBN denotes set
T8382 347-351 VBD denotes were
T8383 362-363 . denotes .
T8384 363-534 sentence denotes The mean CV ranged between 18.4% and 25.8% for all experimental groups, and this relatively low CV indicated that these data could be used for further analysis (Table 1).
T8385 364-367 DT denotes The
T8386 373-375 NN denotes CV
T8387 368-372 JJ denotes mean
T8388 376-382 VBD denotes ranged
T8389 383-390 IN denotes between
T8390 391-395 CD denotes 18.4
T8391 395-396 NN denotes %
T8392 397-400 CC denotes and
T8393 401-405 CD denotes 25.8
T8394 405-406 NN denotes %
T8395 407-410 IN denotes for
T8396 411-414 DT denotes all
T8397 428-434 NNS denotes groups
T8398 415-427 JJ denotes experimental
T8399 434-436 , denotes ,
T8400 436-439 CC denotes and
T8401 440-444 DT denotes this
T8402 460-462 NN denotes CV
T8403 445-455 RB denotes relatively
T8404 456-459 JJ denotes low
T8405 463-472 VBD denotes indicated
T8406 473-477 IN denotes that
T8407 498-502 VBN denotes used
T8408 478-483 DT denotes these
T8409 484-488 NNS denotes data
T8410 489-494 MD denotes could
T8411 495-497 VB denotes be
T8412 503-506 IN denotes for
T8413 507-514 JJ denotes further
T8414 515-523 NN denotes analysis
T8415 524-525 -LRB- denotes (
T8416 525-530 NN denotes Table
T8417 531-532 CD denotes 1
T8418 532-533 -RRB- denotes )
T8419 533-534 . denotes .
T8420 534-732 sentence denotes To search for strain-specific differentially expressed genes, we performed comparisons of gene expression between the DBA/1 and FVB/N strains at all four phases of CIA, including NC, PI, OA and CA.
T8421 535-537 TO denotes To
T8422 538-544 VB denotes search
T8423 600-609 VBD denotes performed
T8424 545-548 IN denotes for
T8425 549-555 NN denotes strain
T8426 556-564 JJ denotes specific
T8427 555-556 HYPH denotes -
T8428 590-595 NNS denotes genes
T8429 565-579 RB denotes differentially
T8430 580-589 VBN denotes expressed
T8431 595-597 , denotes ,
T8432 597-599 PRP denotes we
T8433 610-621 NNS denotes comparisons
T8434 622-624 IN denotes of
T8435 625-629 NN denotes gene
T8436 630-640 NN denotes expression
T8437 641-648 IN denotes between
T8438 649-652 DT denotes the
T8439 669-676 NNS denotes strains
T8440 653-656 NN denotes DBA
T8441 656-657 HYPH denotes /
T8442 657-658 CD denotes 1
T8443 659-662 CC denotes and
T8444 663-666 NN denotes FVB
T8445 667-668 NN denotes N
T8446 666-667 HYPH denotes /
T8447 677-679 IN denotes at
T8448 680-683 DT denotes all
T8449 689-695 NNS denotes phases
T8450 684-688 CD denotes four
T8451 696-698 IN denotes of
T8452 699-702 NN denotes CIA
T8453 702-704 , denotes ,
T8454 704-713 VBG denotes including
T8455 714-716 NN denotes NC
T8456 716-718 , denotes ,
T8457 718-720 NN denotes PI
T8458 720-722 , denotes ,
T8459 722-724 NN denotes OA
T8460 725-728 CC denotes and
T8461 729-731 NN denotes CA
T8462 731-732 . denotes .
T8463 732-838 sentence denotes For the naive mice without immunisation, 361 genes were differentially expressed between the two strains.
T8464 733-736 IN denotes For
T8465 804-813 VBN denotes expressed
T8466 737-740 DT denotes the
T8467 747-751 NNS denotes mice
T8468 741-746 JJ denotes naive
T8469 752-759 IN denotes without
T8470 760-772 NN denotes immunisation
T8471 772-774 , denotes ,
T8472 774-777 CD denotes 361
T8473 778-783 NNS denotes genes
T8474 784-788 VBD denotes were
T8475 789-803 RB denotes differentially
T8476 814-821 IN denotes between
T8477 822-825 DT denotes the
T8478 830-837 NNS denotes strains
T8479 826-829 CD denotes two
T8480 837-838 . denotes .
T8481 838-965 sentence denotes On day 10 after immunisation, when both strains did not show any sign of the disease, 141 genes were differentially expressed.
T8482 839-841 IN denotes On
T8483 955-964 VBN denotes expressed
T8484 842-845 NN denotes day
T8485 846-848 CD denotes 10
T8486 849-854 IN denotes after
T8487 855-867 NN denotes immunisation
T8488 867-869 , denotes ,
T8489 869-873 WRB denotes when
T8490 895-899 VB denotes show
T8491 874-878 DT denotes both
T8492 879-886 NNS denotes strains
T8493 887-890 VBD denotes did
T8494 891-894 RB denotes not
T8495 900-903 DT denotes any
T8496 904-908 NN denotes sign
T8497 909-911 IN denotes of
T8498 912-915 DT denotes the
T8499 916-923 NN denotes disease
T8500 923-925 , denotes ,
T8501 925-928 CD denotes 141
T8502 929-934 NNS denotes genes
T8503 935-939 VBD denotes were
T8504 940-954 RB denotes differentially
T8505 964-965 . denotes .
T8506 965-1128 sentence denotes After DBA/1 mice developed CIA, 184 and 85 differentially expressed genes were identified between these two strains at the onset and chronic phases, respectively.
T8507 966-971 IN denotes After
T8508 983-992 VBD denotes developed
T8509 972-975 NN denotes DBA
T8510 978-982 NNS denotes mice
T8511 975-976 HYPH denotes /
T8512 976-977 CD denotes 1
T8513 1045-1055 VBN denotes identified
T8514 993-996 NN denotes CIA
T8515 996-998 , denotes ,
T8516 998-1001 CD denotes 184
T8517 1034-1039 NNS denotes genes
T8518 1002-1005 CC denotes and
T8519 1006-1008 CD denotes 85
T8520 1009-1023 RB denotes differentially
T8521 1024-1033 VBN denotes expressed
T8522 1040-1044 VBD denotes were
T8523 1056-1063 IN denotes between
T8524 1064-1069 DT denotes these
T8525 1074-1081 NNS denotes strains
T8526 1070-1073 CD denotes two
T8527 1082-1084 IN denotes at
T8528 1085-1088 DT denotes the
T8529 1107-1113 NNS denotes phases
T8530 1089-1094 NN denotes onset
T8531 1095-1098 CC denotes and
T8532 1099-1106 JJ denotes chronic
T8533 1113-1115 , denotes ,
T8534 1115-1127 RB denotes respectively
T8535 1127-1128 . denotes .
T8536 1128-1296 sentence denotes When the lists of the differentially expressed genes at the four phases were merged and overlapping genes were excluded, 509 genes were identified (Additional file 1).
T8537 1129-1133 WRB denotes When
T8538 1206-1212 VBN denotes merged
T8539 1134-1137 DT denotes the
T8540 1138-1143 NNS denotes lists
T8541 1144-1146 IN denotes of
T8542 1147-1150 DT denotes the
T8543 1176-1181 NNS denotes genes
T8544 1151-1165 RB denotes differentially
T8545 1166-1175 VBN denotes expressed
T8546 1182-1184 IN denotes at
T8547 1185-1188 DT denotes the
T8548 1194-1200 NNS denotes phases
T8549 1189-1193 CD denotes four
T8550 1201-1205 VBD denotes were
T8551 1265-1275 VBN denotes identified
T8552 1213-1216 CC denotes and
T8553 1217-1228 VBG denotes overlapping
T8554 1229-1234 NNS denotes genes
T8555 1240-1248 VBN denotes excluded
T8556 1235-1239 VBD denotes were
T8557 1248-1250 , denotes ,
T8558 1250-1253 CD denotes 509
T8559 1254-1259 NNS denotes genes
T8560 1260-1264 VBD denotes were
T8561 1276-1277 -LRB- denotes (
T8562 1288-1292 NN denotes file
T8563 1277-1287 JJ denotes Additional
T8564 1293-1294 CD denotes 1
T8565 1294-1295 -RRB- denotes )
T8566 1295-1296 . denotes .
T8567 1296-1396 sentence denotes Twenty-one genes consistently showed differential expression between the two strains at all phases.
T8568 1297-1303 CD denotes Twenty
T8569 1304-1307 CD denotes one
T8570 1303-1304 HYPH denotes -
T8571 1308-1313 NNS denotes genes
T8572 1327-1333 VBD denotes showed
T8573 1314-1326 RB denotes consistently
T8574 1334-1346 JJ denotes differential
T8575 1347-1357 NN denotes expression
T8576 1358-1365 IN denotes between
T8577 1366-1369 DT denotes the
T8578 1374-1381 NNS denotes strains
T8579 1370-1373 CD denotes two
T8580 1382-1384 IN denotes at
T8581 1385-1388 DT denotes all
T8582 1389-1395 NNS denotes phases
T8583 1395-1396 . denotes .
T8584 1396-1557 sentence denotes Besides these 21 genes, only 3 additional genes were strain-specific differentially expressed during the 3 phases after CIA induction (PI, OA and CA; Figure 1).
T8585 1397-1404 IN denotes Besides
T8586 1481-1490 VBN denotes expressed
T8587 1405-1410 DT denotes these
T8588 1414-1419 NNS denotes genes
T8589 1411-1413 CD denotes 21
T8590 1419-1421 , denotes ,
T8591 1421-1425 RB denotes only
T8592 1439-1444 NNS denotes genes
T8593 1426-1427 CD denotes 3
T8594 1428-1438 JJ denotes additional
T8595 1445-1449 VBD denotes were
T8596 1450-1456 NN denotes strain
T8597 1457-1465 RB denotes specific
T8598 1456-1457 HYPH denotes -
T8599 1466-1480 RB denotes differentially
T8600 1491-1497 IN denotes during
T8601 1498-1501 DT denotes the
T8602 1504-1510 NNS denotes phases
T8603 1502-1503 CD denotes 3
T8604 1511-1516 IN denotes after
T8605 1517-1520 NN denotes CIA
T8606 1521-1530 NN denotes induction
T8607 1531-1532 -LRB- denotes (
T8608 1547-1553 NN denotes Figure
T8609 1532-1534 NN denotes PI
T8610 1534-1536 , denotes ,
T8611 1536-1538 NN denotes OA
T8612 1539-1542 CC denotes and
T8613 1543-1545 NN denotes CA
T8614 1545-1546 : denotes ;
T8615 1554-1555 CD denotes 1
T8616 1555-1556 -RRB- denotes )
T8617 1556-1557 . denotes .
R2441 T8314 T8315 npadvmod Strain,specific
R2442 T8315 T8317 amod specific,genes
R2443 T8316 T8315 punct -,specific
R2444 T8318 T8319 advmod differentially,expressed
R2445 T8319 T8317 amod expressed,genes
R2446 T8321 T8322 nsubj We,detected
R2447 T8323 T8324 det the,profiles
R2449 T8325 T8326 compound gene,expression
R2450 T8326 T8324 compound expression,profiles
R2451 T8327 T8322 advcl using,detected
R2452 T8328 T8329 nummod three,mice
R2453 T8329 T8327 dobj mice,using
R2454 T8330 T8329 prep per,mice
R2455 T8331 T8330 pobj group,per
R2456 T8332 T8329 punct ", ",mice
R2457 T8333 T8334 dep which,is
R2458 T8334 T8329 relcl is,mice
R2459 T8335 T8336 det a,number
R2460 T8336 T8334 attr number,is
R2461 T8337 T8336 amod small,number
R2462 T8338 T8322 punct .,detected
R2463 T8340 T8341 advcl Being,determined
R2464 T8342 T8340 acomp aware,Being
R2465 T8343 T8342 prep of,aware
R2466 T8344 T8345 det the,importance
R2467 T8345 T8343 pobj importance,of
R2468 T8346 T8345 prep of,importance
R2469 T8347 T8348 compound data,reproducibility
R2470 T8348 T8346 pobj reproducibility,of
R2471 T8349 T8341 punct ", ",determined
R2472 T8350 T8341 nsubj we,determined
R2473 T8351 T8352 det the,coefficient
R2474 T8352 T8341 dobj coefficient,determined
R2475 T8353 T8352 prep of,coefficient
R2476 T8354 T8353 pobj variation,of
R2477 T8355 T8352 punct (,coefficient
R2478 T8356 T8352 appos CV,coefficient
R2479 T8357 T8341 punct ),determined
R2480 T8358 T8359 aux to,measure
R2481 T8359 T8341 advcl measure,determined
R2482 T8360 T8361 compound data,variability
R2483 T8361 T8359 dobj variability,measure
R2484 T8362 T8341 punct .,determined
R2485 T8364 T8365 det The,CV
R2486 T8365 T8366 nsubjpass CV,calculated
R2487 T8367 T8365 prep for,CV
R2488 T8368 T8369 det each,gene
R2489 T8369 T8367 pobj gene,for
R2490 T8370 T8369 prep on,gene
R2491 T8371 T8372 det the,chip
R2492 T8372 T8370 pobj chip,on
R2493 T8373 T8365 cc and,CV
R2494 T8374 T8375 det the,CV
R2495 T8375 T8365 conj CV,CV
R2496 T8376 T8375 amod mean,CV
R2497 T8377 T8375 prep for,CV
R2498 T8378 T8379 det the,probe
R2499 T8379 T8377 pobj probe,for
R2500 T8380 T8379 amod entire,probe
R2501 T8381 T8379 amod set,probe
R2502 T8382 T8366 auxpass were,calculated
R2503 T8383 T8366 punct .,calculated
R2504 T8385 T8386 det The,CV
R2505 T8386 T8388 nsubj CV,ranged
R2506 T8387 T8386 amod mean,CV
R2507 T8389 T8388 prep between,ranged
R2508 T8390 T8391 nummod 18.4,%
R2509 T8391 T8389 pobj %,between
R2510 T8392 T8391 cc and,%
R2511 T8393 T8394 nummod 25.8,%
R2512 T8394 T8391 conj %,%
R2513 T8395 T8388 prep for,ranged
R2514 T8396 T8397 det all,groups
R2515 T8397 T8395 pobj groups,for
R2516 T8398 T8397 amod experimental,groups
R2517 T8399 T8388 punct ", ",ranged
R2518 T8400 T8388 cc and,ranged
R2519 T8401 T8402 det this,CV
R2521 T8403 T8404 advmod relatively,low
R2522 T8404 T8402 amod low,CV
R2523 T8405 T8388 conj indicated,ranged
R2524 T8406 T8407 mark that,used
R2525 T8407 T8405 ccomp used,indicated
R2526 T8408 T8409 det these,data
R2527 T8409 T8407 nsubjpass data,used
R2528 T8410 T8407 aux could,used
R2529 T8411 T8407 auxpass be,used
R2530 T8412 T8407 prep for,used
R2531 T8413 T8414 amod further,analysis
R2532 T8414 T8412 pobj analysis,for
R2533 T8415 T8416 punct (,Table
R2534 T8416 T8405 parataxis Table,indicated
R2535 T8417 T8416 nummod 1,Table
R2536 T8418 T8416 punct ),Table
R2537 T8419 T8405 punct .,indicated
R2538 T8421 T8422 aux To,search
R2539 T8422 T8423 advcl search,performed
R2540 T8424 T8422 prep for,search
R2541 T8425 T8426 npadvmod strain,specific
R2542 T8426 T8428 amod specific,genes
R2543 T8427 T8426 punct -,specific
R2545 T8429 T8430 advmod differentially,expressed
R2546 T8430 T8428 amod expressed,genes
R2547 T8431 T8423 punct ", ",performed
R2548 T8432 T8423 nsubj we,performed
R2549 T8433 T8423 dobj comparisons,performed
R2550 T8434 T8433 prep of,comparisons
R2551 T8435 T8436 compound gene,expression
R2552 T8436 T8434 pobj expression,of
R2553 T8437 T8433 prep between,comparisons
R2554 T8438 T8439 det the,strains
R2555 T8439 T8437 pobj strains,between
R2556 T8440 T8439 nmod DBA,strains
R2557 T8441 T8440 punct /,DBA
R2558 T8442 T8440 nummod 1,DBA
R2559 T8443 T8440 cc and,DBA
R2560 T8444 T8445 compound FVB,N
R2561 T8445 T8440 conj N,DBA
R2562 T8446 T8445 punct /,N
R2563 T8447 T8423 prep at,performed
R2564 T8448 T8449 det all,phases
R2565 T8449 T8447 pobj phases,at
R2566 T8450 T8449 nummod four,phases
R2567 T8451 T8449 prep of,phases
R2568 T8452 T8451 pobj CIA,of
R2569 T8453 T8449 punct ", ",phases
R2570 T8454 T8449 prep including,phases
R2571 T8455 T8454 pobj NC,including
R2572 T8456 T8455 punct ", ",NC
R2573 T8457 T8455 conj PI,NC
R2574 T8458 T8457 punct ", ",PI
R2575 T8459 T8457 conj OA,PI
R2576 T8460 T8459 cc and,OA
R2577 T8461 T8459 conj CA,OA
R2578 T8462 T8423 punct .,performed
R2579 T8464 T8465 prep For,expressed
R2580 T8466 T8467 det the,mice
R2581 T8467 T8464 pobj mice,For
R2582 T8468 T8467 amod naive,mice
R2583 T8469 T8467 prep without,mice
R2584 T8470 T8469 pobj immunisation,without
R2585 T8471 T8465 punct ", ",expressed
R2586 T8472 T8473 nummod 361,genes
R2587 T8473 T8465 nsubjpass genes,expressed
R2588 T8474 T8465 auxpass were,expressed
R2589 T8475 T8465 advmod differentially,expressed
R2590 T8476 T8465 prep between,expressed
R2591 T8477 T8478 det the,strains
R2592 T8478 T8476 pobj strains,between
R2593 T8479 T8478 nummod two,strains
R2594 T8480 T8465 punct .,expressed
R2595 T8482 T8483 prep On,expressed
R2596 T8484 T8482 pobj day,On
R2597 T8485 T8484 nummod 10,day
R2598 T8486 T8484 prep after,day
R2599 T8487 T8486 pobj immunisation,after
R2600 T8488 T8484 punct ", ",day
R2601 T8489 T8490 advmod when,show
R2602 T8490 T8484 relcl show,day
R2603 T8491 T8492 det both,strains
R2604 T8492 T8490 nsubj strains,show
R2605 T8493 T8490 aux did,show
R2606 T8494 T8490 neg not,show
R2607 T8495 T8496 det any,sign
R2608 T8496 T8490 dobj sign,show
R2609 T8497 T8496 prep of,sign
R2610 T8498 T8499 det the,disease
R2611 T8499 T8497 pobj disease,of
R2612 T8500 T8483 punct ", ",expressed
R2613 T8501 T8502 nummod 141,genes
R2614 T8502 T8483 nsubjpass genes,expressed
R2615 T8503 T8483 auxpass were,expressed
R2616 T8504 T8483 advmod differentially,expressed
R2617 T8505 T8483 punct .,expressed
R2618 T8507 T8508 mark After,developed
R2619 T8508 T8513 advcl developed,identified
R2620 T8509 T8510 nmod DBA,mice
R2621 T8510 T8508 nsubj mice,developed
R2622 T8511 T8509 punct /,DBA
R2623 T8512 T8509 nummod 1,DBA
R2624 T8514 T8508 dobj CIA,developed
R2625 T8515 T8513 punct ", ",identified
R2626 T8516 T8517 nummod 184,genes
R2627 T8517 T8513 nsubjpass genes,identified
R2628 T8518 T8516 cc and,184
R2629 T8519 T8516 conj 85,184
R2630 T8520 T8521 advmod differentially,expressed
R2631 T8521 T8517 amod expressed,genes
R2632 T8522 T8513 auxpass were,identified
R2633 T8523 T8513 prep between,identified
R2634 T8524 T8525 det these,strains
R2635 T8525 T8523 pobj strains,between
R2636 T8526 T8525 nummod two,strains
R2637 T8527 T8513 prep at,identified
R2638 T8528 T8529 det the,phases
R2639 T8529 T8527 pobj phases,at
R2640 T8530 T8529 nmod onset,phases
R2641 T8531 T8530 cc and,onset
R2642 T8532 T8530 conj chronic,onset
R2643 T8533 T8513 punct ", ",identified
R2644 T8534 T8513 advmod respectively,identified
R2645 T8535 T8513 punct .,identified
R2646 T8537 T8538 advmod When,merged
R2647 T8538 T8551 advcl merged,identified
R2648 T8539 T8540 det the,lists
R2649 T8540 T8538 nsubjpass lists,merged
R2650 T8541 T8540 prep of,lists
R2651 T8542 T8543 det the,genes
R2652 T8543 T8541 pobj genes,of
R2653 T8544 T8545 advmod differentially,expressed
R2654 T8545 T8543 amod expressed,genes
R2655 T8546 T8540 prep at,lists
R2656 T8547 T8548 det the,phases
R2657 T8548 T8546 pobj phases,at
R2658 T8549 T8548 nummod four,phases
R2659 T8550 T8538 auxpass were,merged
R2660 T8552 T8538 cc and,merged
R2661 T8553 T8554 amod overlapping,genes
R2662 T8554 T8555 nsubjpass genes,excluded
R2663 T8555 T8538 conj excluded,merged
R2664 T8556 T8555 auxpass were,excluded
R2665 T8557 T8551 punct ", ",identified
R2666 T8558 T8559 nummod 509,genes
R2667 T8559 T8551 nsubjpass genes,identified
R2668 T8560 T8551 auxpass were,identified
R2669 T8561 T8562 punct (,file
R2670 T8562 T8551 parataxis file,identified
R2671 T8563 T8562 amod Additional,file
R2672 T8564 T8562 nummod 1,file
R2673 T8565 T8562 punct ),file
R2674 T8566 T8551 punct .,identified
R2675 T8568 T8569 compound Twenty,one
R2676 T8569 T8571 nummod one,genes
R2677 T8570 T8569 punct -,one
R2678 T8571 T8572 nsubj genes,showed
R2679 T8573 T8572 advmod consistently,showed
R2680 T8574 T8575 amod differential,expression
R2681 T8575 T8572 dobj expression,showed
R2682 T8576 T8572 prep between,showed
R2683 T8577 T8578 det the,strains
R2684 T8578 T8576 pobj strains,between
R2685 T8579 T8578 nummod two,strains
R2686 T8580 T8572 prep at,showed
R2687 T8581 T8582 det all,phases
R2688 T8582 T8580 pobj phases,at
R2689 T8583 T8572 punct .,showed
R2690 T8585 T8586 prep Besides,expressed
R2691 T8587 T8588 det these,genes
R2692 T8588 T8585 pobj genes,Besides
R2693 T8589 T8588 nummod 21,genes
R2694 T8590 T8586 punct ", ",expressed
R2695 T8591 T8592 advmod only,genes
R2697 T8593 T8592 nummod 3,genes
R2698 T8594 T8592 amod additional,genes
R2699 T8595 T8586 auxpass were,expressed
R2700 T8596 T8597 npadvmod strain,specific
R2701 T8597 T8586 advmod specific,expressed
R2702 T8598 T8597 punct -,specific
R2703 T8599 T8586 advmod differentially,expressed
R2704 T8600 T8586 prep during,expressed
R2705 T8601 T8602 det the,phases
R2706 T8602 T8600 pobj phases,during
R2707 T8603 T8602 nummod 3,phases
R2708 T8604 T8602 prep after,phases
R2709 T8605 T8606 compound CIA,induction
R2710 T8606 T8604 pobj induction,after
R2711 T8607 T8608 punct (,Figure
R2712 T8608 T8586 parataxis Figure,expressed
R2713 T8609 T8608 dep PI,Figure
R2714 T8610 T8609 punct ", ",PI
R2715 T8611 T8609 conj OA,PI
R2716 T8612 T8611 cc and,OA
R2717 T8613 T8611 conj CA,OA
R2718 T8614 T8608 punct ;,Figure
R2719 T8615 T8608 nummod 1,Figure
R2720 T8616 T8608 punct ),Figure
R2721 T8617 T8586 punct .,expressed
R2448 T8324 T8322 dobj profiles,detected
R2520 T8402 T8405 nsubj CV,indicated
R2544 T8428 T8424 pobj genes,for
R2696 T8592 T8586 nsubjpass genes,expressed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8286 31-40 GO:0010467 denotes expressed
T8287 41-46 SO_EXT:0000704 denotes genes
T8288 63-67 SO_EXT:0000704 denotes gene
T8289 63-78 GO:0010467 denotes gene expression
T8290 100-104 NCBITaxon:10088 denotes mice
T8291 289-293 SO_EXT:0000704 denotes gene
T8292 337-342 CHEBI_SO_EXT:molecular_probe denotes probe
T8293 580-589 GO:0010467 denotes expressed
T8294 590-595 SO_EXT:0000704 denotes genes
T8295 625-629 SO_EXT:0000704 denotes gene
T8296 625-640 GO:0010467 denotes gene expression
T8297 747-751 NCBITaxon:10088 denotes mice
T8298 778-783 SO_EXT:0000704 denotes genes
T8299 804-813 GO:0010467 denotes expressed
T8300 929-934 SO_EXT:0000704 denotes genes
T8301 955-964 GO:0010467 denotes expressed
T8302 978-982 NCBITaxon:10088 denotes mice
T8303 1024-1033 GO:0010467 denotes expressed
T8304 1034-1039 SO_EXT:0000704 denotes genes
T8305 1166-1175 GO:0010467 denotes expressed
T8306 1176-1181 SO_EXT:0000704 denotes genes
T8307 1229-1234 SO_EXT:0000704 denotes genes
T8308 1254-1259 SO_EXT:0000704 denotes genes
T8309 1308-1313 SO_EXT:0000704 denotes genes
T8310 1347-1357 GO:0010467 denotes expression
T8311 1414-1419 SO_EXT:0000704 denotes genes
T8312 1439-1444 SO_EXT:0000704 denotes genes
T8313 1481-1490 GO:0010467 denotes expressed

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8259 31-40 GO:0010467 denotes expressed
T8260 41-46 SO:0000704 denotes genes
T8261 63-67 SO:0000704 denotes gene
T8262 63-78 GO:0010467 denotes gene expression
T8263 100-104 NCBITaxon:10088 denotes mice
T8264 289-293 SO:0000704 denotes gene
T8265 580-589 GO:0010467 denotes expressed
T8266 590-595 SO:0000704 denotes genes
T8267 625-629 SO:0000704 denotes gene
T8268 625-640 GO:0010467 denotes gene expression
T8269 747-751 NCBITaxon:10088 denotes mice
T8270 778-783 SO:0000704 denotes genes
T8271 804-813 GO:0010467 denotes expressed
T8272 929-934 SO:0000704 denotes genes
T8273 955-964 GO:0010467 denotes expressed
T8274 978-982 NCBITaxon:10088 denotes mice
T8275 1024-1033 GO:0010467 denotes expressed
T8276 1034-1039 SO:0000704 denotes genes
T8277 1166-1175 GO:0010467 denotes expressed
T8278 1176-1181 SO:0000704 denotes genes
T8279 1229-1234 SO:0000704 denotes genes
T8280 1254-1259 SO:0000704 denotes genes
T8281 1308-1313 SO:0000704 denotes genes
T8282 1347-1357 GO:0010467 denotes expression
T8283 1414-1419 SO:0000704 denotes genes
T8284 1439-1444 SO:0000704 denotes genes
T8285 1481-1490 GO:0010467 denotes expressed