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PMC:1858683 / 8245-8889 JSONTXT

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Id Subject Object Predicate Lexical cue
T4761 630-634 DT denotes both
T4760 626-629 IN denotes for
T4759 608-618 VBG denotes developing
T4758 619-625 NN denotes kidney
T4757 604-607 DT denotes the
T4756 601-603 IN denotes of
T4755 591-594 DT denotes all
T4754 595-600 NNS denotes cells
T4753 579-590 RB denotes essentially
T4752 576-578 IN denotes in
T4751 563-566 VBD denotes was
T4750 567-575 VBN denotes detected
T4749 546-553 JJ denotes nuclear
T4748 554-562 NN denotes staining
T4747 534-545 JJ denotes significant
T4746 530-533 CC denotes and
T4745 528-530 , denotes ,
T4744 523-528 NNS denotes cells
T4743 515-522 JJ denotes stromal
T4742 512-514 IN denotes in
T4741 503-506 VBD denotes was
T4740 501-503 , denotes ,
T4739 496-501 NN denotes Pygo2
T4738 479-485 JJR denotes lesser
T4737 486-492 NN denotes degree
T4736 477-478 DT denotes a
T4735 493-495 IN denotes of
T4734 474-476 IN denotes to
T4733 470-473 CC denotes and
T4732 468-470 , denotes ,
T4731 463-468 NN denotes Pygo1
T4730 460-462 IN denotes of
T4729 507-511 VBN denotes seen
T4728 449-459 NN denotes expression
T4727 442-448 VBN denotes Raised
T4726 441-644 sentence denotes Raised expression of Pygo1, and to a lesser degree of Pygo2, was seen in stromal cells, and significant nuclear staining was detected in essentially all cells of the developing kidney for both proteins.
T4725 440-441 . denotes .
T4724 439-440 -RRB- denotes )
T4723 438-439 CD denotes 2
T4722 431-437 NN denotes Figure
T4721 430-431 -LRB- denotes (
T4720 424-429 NNS denotes cells
T4719 416-423 JJ denotes stromal
T4718 412-415 CC denotes and
T4717 410-412 , denotes ,
T4716 400-410 NN denotes mesenchyme
T4715 392-399 NN denotes capping
T4714 390-392 , denotes ,
T4713 378-386 JJ denotes ureteric
T4712 387-390 NN denotes bud
T4711 374-377 DT denotes the
T4710 371-373 IN denotes in
T4709 362-370 NN denotes proteins
T4708 354-361 VBN denotes encoded
T4707 351-353 IN denotes of
T4706 338-350 NN denotes localization
T4705 330-337 JJ denotes nuclear
T4704 322-329 VBG denotes showing
T4703 320-322 , denotes ,
T4702 304-310 RB denotes widely
T4701 299-303 VBD denotes were
T4700 311-320 VBN denotes expressed
T4699 293-298 NNS denotes genes
T4698 288-292 DT denotes Both
T4697 287-441 sentence denotes Both genes were widely expressed, showing nuclear localization of encoded proteins in the ureteric bud, capping mesenchyme, and stromal cells (Figure 2).
T4696 286-287 . denotes .
T4695 269-279 VBG denotes developing
T4694 280-286 NN denotes kidney
T4693 265-268 DT denotes the
T4692 262-264 IN denotes in
T4691 250-255 NN denotes Pygo2
T4690 246-249 CC denotes and
T4689 240-245 NN denotes Pygo1
T4688 256-261 NNS denotes genes
T4687 236-239 DT denotes the
T4686 233-235 IN denotes of
T4685 213-223 NN denotes expression
T4684 224-232 NNS denotes patterns
T4683 209-212 DT denotes the
T4682 195-201 RBR denotes better
T4681 202-208 VB denotes define
T4680 192-194 TO denotes to
T4679 173-191 NN denotes immunofluorescence
T4678 165-167 PRP denotes we
T4677 163-165 , denotes ,
T4676 157-163 NN denotes report
T4675 152-156 DT denotes this
T4674 168-172 VBD denotes used
T4673 149-151 IN denotes In
T4672 148-287 sentence denotes In this report, we used immunofluorescence to better define the expression patterns of the Pygo1 and Pygo2 genes in the developing kidney.
T4671 147-148 . denotes .
T4670 146-147 -RRB- denotes )
T4669 144-146 , denotes ,
T4668 138-144 NN denotes GUDMAP
T4667 135-137 IN denotes to
T4666 122-134 NN denotes contribution
T4665 120-122 , denotes ,
T4664 118-120 NNP denotes AP
T4663 110-117 NNP denotes McMahon
T4662 108-110 , denotes ,
T4661 106-108 NNP denotes MT
T4660 97-105 NNP denotes Valerius
T4659 95-97 , denotes ,
T4658 94-95 NNP denotes J
T4657 91-93 NNP denotes Yu
T4656 90-91 -LRB- denotes (
T4655 89-90 -RRB- denotes ]
T4654 86-87 , denotes ,
T4653 84-86 CD denotes 14
T4652 87-89 CD denotes 16
T4651 83-84 -LRB- denotes [
T4650 77-82 NN denotes Pygo1
T4649 74-76 IN denotes of
T4648 63-73 NN denotes expression
T4647 50-62 VB denotes characterize
T4646 47-49 TO denotes to
T4645 36-46 RB denotes previously
T4644 26-30 VBN denotes been
T4643 22-25 VBZ denotes has
T4642 31-35 VBN denotes used
T4641 8-21 NN denotes hybridization
T4640 3-7 FW denotes situ
T4639 0-2 FW denotes In
T4763 643-644 . denotes .
T4762 635-643 NN denotes proteins
R1265 T4639 T4640 advmod In,situ
R1266 T4640 T4641 amod situ,hybridization
R1267 T4641 T4642 nsubjpass hybridization,used
R1268 T4643 T4642 aux has,used
R1269 T4644 T4642 auxpass been,used
R1270 T4645 T4642 advmod previously,used
R1271 T4646 T4647 aux to,characterize
R1272 T4647 T4642 advcl characterize,used
R1273 T4648 T4647 dobj expression,characterize
R1274 T4649 T4648 prep of,expression
R1275 T4650 T4649 pobj Pygo1,of
R1276 T4651 T4652 punct [,16
R1277 T4652 T4642 parataxis 16,used
R1278 T4653 T4652 nummod 14,16
R1279 T4654 T4652 punct ",",16
R1280 T4655 T4652 punct ],16
R1281 T4656 T4657 punct (,Yu
R1282 T4657 T4642 meta Yu,used
R1283 T4658 T4657 nmod J,Yu
R1284 T4659 T4657 punct ", ",Yu
R1285 T4660 T4657 nmod Valerius,Yu
R1286 T4661 T4657 nmod MT,Yu
R1287 T4662 T4657 punct ", ",Yu
R1288 T4663 T4657 nmod McMahon,Yu
R1289 T4664 T4657 nmod AP,Yu
R1290 T4665 T4657 punct ", ",Yu
R1291 T4666 T4657 nmod contribution,Yu
R1292 T4667 T4657 nmod to,Yu
R1293 T4668 T4657 nmod GUDMAP,Yu
R1294 T4669 T4657 punct ", ",Yu
R1295 T4670 T4657 punct ),Yu
R1296 T4671 T4642 punct .,used
R1297 T4673 T4674 prep In,used
R1298 T4675 T4676 det this,report
R1299 T4676 T4673 pobj report,In
R1300 T4677 T4674 punct ", ",used
R1301 T4678 T4674 nsubj we,used
R1302 T4679 T4674 dobj immunofluorescence,used
R1303 T4680 T4681 aux to,define
R1304 T4681 T4674 advcl define,used
R1305 T4682 T4681 advmod better,define
R1306 T4683 T4684 det the,patterns
R1307 T4684 T4681 dobj patterns,define
R1308 T4685 T4684 compound expression,patterns
R1309 T4686 T4684 prep of,patterns
R1310 T4687 T4688 det the,genes
R1311 T4688 T4686 pobj genes,of
R1312 T4689 T4688 nmod Pygo1,genes
R1313 T4690 T4689 cc and,Pygo1
R1314 T4691 T4689 conj Pygo2,Pygo1
R1315 T4692 T4684 prep in,patterns
R1316 T4693 T4694 det the,kidney
R1317 T4694 T4692 pobj kidney,in
R1318 T4695 T4694 amod developing,kidney
R1319 T4696 T4674 punct .,used
R1320 T4698 T4699 det Both,genes
R1321 T4699 T4700 nsubjpass genes,expressed
R1322 T4701 T4700 auxpass were,expressed
R1323 T4702 T4700 advmod widely,expressed
R1324 T4703 T4700 punct ", ",expressed
R1325 T4704 T4700 advcl showing,expressed
R1326 T4705 T4706 amod nuclear,localization
R1327 T4706 T4704 dobj localization,showing
R1328 T4707 T4706 prep of,localization
R1329 T4708 T4709 amod encoded,proteins
R1330 T4709 T4707 pobj proteins,of
R1331 T4710 T4706 prep in,localization
R1332 T4711 T4712 det the,bud
R1333 T4712 T4710 pobj bud,in
R1334 T4713 T4712 amod ureteric,bud
R1335 T4714 T4712 punct ", ",bud
R1336 T4715 T4716 compound capping,mesenchyme
R1337 T4716 T4712 conj mesenchyme,bud
R1338 T4717 T4716 punct ", ",mesenchyme
R1339 T4718 T4716 cc and,mesenchyme
R1340 T4719 T4720 amod stromal,cells
R1341 T4720 T4716 conj cells,mesenchyme
R1342 T4721 T4722 punct (,Figure
R1343 T4722 T4700 parataxis Figure,expressed
R1344 T4723 T4722 nummod 2,Figure
R1345 T4724 T4722 punct ),Figure
R1346 T4725 T4700 punct .,expressed
R1347 T4727 T4728 amod Raised,expression
R1348 T4728 T4729 nsubjpass expression,seen
R1349 T4730 T4728 prep of,expression
R1350 T4731 T4730 pobj Pygo1,of
R1351 T4732 T4730 punct ", ",of
R1352 T4733 T4730 cc and,of
R1353 T4734 T4735 prep to,of
R1354 T4735 T4730 conj of,of
R1355 T4736 T4737 det a,degree
R1356 T4737 T4734 pobj degree,to
R1357 T4738 T4737 amod lesser,degree
R1358 T4739 T4735 pobj Pygo2,of
R1359 T4740 T4729 punct ", ",seen
R1360 T4741 T4729 auxpass was,seen
R1361 T4742 T4729 prep in,seen
R1362 T4743 T4744 amod stromal,cells
R1363 T4744 T4742 pobj cells,in
R1364 T4745 T4729 punct ", ",seen
R1365 T4746 T4729 cc and,seen
R1366 T4747 T4748 amod significant,staining
R1367 T4748 T4750 nsubjpass staining,detected
R1368 T4749 T4748 amod nuclear,staining
R1369 T4750 T4729 conj detected,seen
R1370 T4751 T4750 auxpass was,detected
R1371 T4752 T4750 prep in,detected
R1372 T4753 T4754 advmod essentially,cells
R1373 T4754 T4752 pobj cells,in
R1374 T4755 T4754 det all,cells
R1375 T4756 T4754 prep of,cells
R1376 T4757 T4758 det the,kidney
R1377 T4758 T4756 pobj kidney,of
R1378 T4759 T4758 amod developing,kidney
R1379 T4760 T4750 prep for,detected
R1380 T4761 T4762 det both,proteins
R1381 T4762 T4760 pobj proteins,for
R1382 T4763 T4750 punct .,detected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4602 240-245 PR_EXT:000013523 denotes Pygo1
T4601 213-223 GO:0010467 denotes expression
T4600 77-82 PR_EXT:000013523 denotes Pygo1
T4599 63-73 GO:0010467 denotes expression
T4598 8-21 GO:0097617 denotes hybridization
T4628 635-643 CHEBI_PR_EXT:protein denotes proteins
T4627 619-625 UBERON:0002113 denotes kidney
T4626 619-625 CL:1000497 denotes kidney
T4625 595-603 _FRAGMENT denotes cells of
T4624 595-600 CL_GO_EXT:cell denotes cells
T4623 546-553 GO:0005634 denotes nuclear
T4622 523-528 CL_GO_EXT:cell denotes cells
T4621 515-528 CL:0000499 denotes stromal cells
T4620 515-522 UBERON:0003891 denotes stromal
T4619 496-501 PR_EXT:000013524 denotes Pygo2
T4618 463-468 PR_EXT:000013523 denotes Pygo1
T4617 449-459 GO:0010467 denotes expression
T4616 424-429 CL_GO_EXT:cell denotes cells
T4615 416-429 CL:0000499 denotes stromal cells
T4614 416-423 UBERON:0003891 denotes stromal
T4613 392-410 UBERON:0005107 denotes capping mesenchyme
T4612 378-390 UBERON:0000084 denotes ureteric bud
T4611 362-370 CHEBI_PR_EXT:protein denotes proteins
T4610 354-361 SO_EXT:sequence_coding_function denotes encoded
T4609 338-350 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T4608 330-337 GO:0005634 denotes nuclear
T4607 311-320 GO:0010467 denotes expressed
T4606 293-298 SO_EXT:0000704 denotes genes
T4605 280-286 UBERON:0002113 denotes kidney
T4604 256-261 SO_EXT:0000704 denotes genes
T4603 250-255 PR_EXT:000013524 denotes Pygo2
R1256 T4626 T4625 _lexicallyChainedTo kidney,cells of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4593 619-625 UBERON:0002113 denotes kidney
T4592 619-625 CL:1000497 denotes kidney
T4591 595-603 _FRAGMENT denotes cells of
T4590 546-553 GO:0005634 denotes nuclear
T4589 515-528 CL:0000499 denotes stromal cells
T4588 515-522 UBERON:0003891 denotes stromal
T4587 496-501 PR:000013524 denotes Pygo2
T4586 463-468 PR:000013523 denotes Pygo1
T4585 449-459 GO:0010467 denotes expression
T4584 416-429 CL:0000499 denotes stromal cells
T4583 416-423 UBERON:0003891 denotes stromal
T4582 392-410 UBERON:0005107 denotes capping mesenchyme
T4581 378-390 UBERON:0000084 denotes ureteric bud
T4580 330-337 GO:0005634 denotes nuclear
T4579 311-320 GO:0010467 denotes expressed
T4578 293-298 SO:0000704 denotes genes
T4577 280-286 UBERON:0002113 denotes kidney
T4576 256-261 SO:0000704 denotes genes
T4575 250-255 PR:000013524 denotes Pygo2
T4574 240-245 PR:000013523 denotes Pygo1
T4573 213-223 GO:0010467 denotes expression
T4572 77-82 PR:000013523 denotes Pygo1
T4571 63-73 GO:0010467 denotes expression
T4570 8-21 GO:0097617 denotes hybridization
R1255 T4592 T4591 _lexicallyChainedTo kidney,cells of

2_test

Id Subject Object Predicate Lexical cue
17425782-15234002-8469449 84-86 15234002 denotes 14
17425782-15618518-8469450 87-89 15618518 denotes 16