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PMC:1858683 / 4374-5466 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T3017 0-3 DT denotes The
T3018 14-20 NN denotes genome
T3019 4-13 JJ denotes mammalian
T3020 21-28 VBZ denotes carries
T3021 29-32 CD denotes two
T3022 48-57 NNS denotes orthologs
T3023 32-34 , denotes ,
T3024 34-37 CC denotes and
T3025 38-42 RB denotes only
T3026 43-46 CD denotes two
T3027 46-48 , denotes ,
T3028 58-60 IN denotes of
T3029 61-71 NNP denotes Drosophila
T3030 72-76 NN denotes Pygo
T3031 76-78 , denotes ,
T3032 78-83 NN denotes Pygo1
T3033 84-87 CC denotes and
T3034 88-93 NN denotes Pygo2
T3035 94-95 -LRB- denotes [
T3036 99-101 CD denotes 14
T3037 95-96 CD denotes 8
T3038 96-97 , denotes ,
T3039 97-98 CD denotes 9
T3040 98-99 , denotes ,
T3041 101-102 -RRB- denotes ]
T3042 102-103 . denotes .
T3043 103-317 sentence denotes In this report, we generated targeted mutations of Pygo1 and Pygo2 to determine their functions, with a particular interest in the contributions of these genes to canonical Wnt signaling during kidney development.
T3044 104-106 IN denotes In
T3045 123-132 VBD denotes generated
T3046 107-111 DT denotes this
T3047 112-118 NN denotes report
T3048 118-120 , denotes ,
T3049 120-122 PRP denotes we
T3050 133-141 VBN denotes targeted
T3051 142-151 NNS denotes mutations
T3052 152-154 IN denotes of
T3053 155-160 NN denotes Pygo1
T3054 161-164 CC denotes and
T3055 165-170 NN denotes Pygo2
T3056 171-173 TO denotes to
T3057 174-183 VB denotes determine
T3058 184-189 PRP$ denotes their
T3059 190-199 NNS denotes functions
T3060 199-201 , denotes ,
T3061 201-205 IN denotes with
T3062 206-207 DT denotes a
T3063 219-227 NN denotes interest
T3064 208-218 JJ denotes particular
T3065 228-230 IN denotes in
T3066 231-234 DT denotes the
T3067 235-248 NNS denotes contributions
T3068 249-251 IN denotes of
T3069 252-257 DT denotes these
T3070 258-263 NNS denotes genes
T3071 264-266 IN denotes to
T3072 267-276 JJ denotes canonical
T3073 281-290 NN denotes signaling
T3074 277-280 NN denotes Wnt
T3075 291-297 IN denotes during
T3076 298-304 NN denotes kidney
T3077 305-316 NN denotes development
T3078 316-317 . denotes .
T3079 317-478 sentence denotes The resulting double-homozygous mutant embryos showed a context-dependent reduction in canonical Wnt signaling as measured by Wnt reporter transgene expression.
T3080 318-321 DT denotes The
T3081 357-364 NNS denotes embryos
T3082 322-331 VBG denotes resulting
T3083 332-338 JJ denotes double
T3084 339-349 JJ denotes homozygous
T3085 338-339 HYPH denotes -
T3086 350-356 NN denotes mutant
T3087 365-371 VBD denotes showed
T3088 372-373 DT denotes a
T3089 392-401 NN denotes reduction
T3090 374-381 NN denotes context
T3091 382-391 JJ denotes dependent
T3092 381-382 HYPH denotes -
T3093 402-404 IN denotes in
T3094 405-414 JJ denotes canonical
T3095 419-428 NN denotes signaling
T3096 415-418 NN denotes Wnt
T3097 429-431 IN denotes as
T3098 432-440 VBN denotes measured
T3099 441-443 IN denotes by
T3100 444-447 NN denotes Wnt
T3101 448-456 NN denotes reporter
T3102 457-466 NN denotes transgene
T3103 467-477 NN denotes expression
T3104 477-478 . denotes .
T3105 478-601 sentence denotes Development remained, however, surprisingly normal, with survival to birth and few apparent defects in most organ systems.
T3106 479-490 NN denotes Development
T3107 491-499 VBD denotes remained
T3108 499-501 , denotes ,
T3109 501-508 RB denotes however
T3110 508-510 , denotes ,
T3111 510-522 RB denotes surprisingly
T3112 523-529 JJ denotes normal
T3113 529-531 , denotes ,
T3114 531-535 IN denotes with
T3115 536-544 NN denotes survival
T3116 545-547 IN denotes to
T3117 548-553 NN denotes birth
T3118 554-557 CC denotes and
T3119 558-561 JJ denotes few
T3120 571-578 NNS denotes defects
T3121 562-570 JJ denotes apparent
T3122 579-581 IN denotes in
T3123 582-586 JJS denotes most
T3124 593-600 NNS denotes systems
T3125 587-592 NN denotes organ
T3126 600-601 . denotes .
T3127 601-927 sentence denotes Our phenotypic analysis focused on the kidney, which showed altered branching morphogenesis of the ureteric bud, and expansion of the zone of condensed mesenchyme surrounding the ureteric bud, yet relatively normal nephron formation, as measured by histology, confocal analysis, in situ hybridization and microarray analysis.
T3128 602-605 PRP$ denotes Our
T3129 617-625 NN denotes analysis
T3130 606-616 JJ denotes phenotypic
T3131 626-633 VBD denotes focused
T3132 634-636 IN denotes on
T3133 637-640 DT denotes the
T3134 641-647 NN denotes kidney
T3135 647-649 , denotes ,
T3136 649-654 WDT denotes which
T3137 655-661 VBD denotes showed
T3138 662-669 VBN denotes altered
T3139 680-693 NN denotes morphogenesis
T3140 670-679 NN denotes branching
T3141 694-696 IN denotes of
T3142 697-700 DT denotes the
T3143 710-713 NN denotes bud
T3144 701-709 JJ denotes ureteric
T3145 713-715 , denotes ,
T3146 715-718 CC denotes and
T3147 719-728 NN denotes expansion
T3148 729-731 IN denotes of
T3149 732-735 DT denotes the
T3150 736-740 NN denotes zone
T3151 741-743 IN denotes of
T3152 744-753 VBN denotes condensed
T3153 754-764 NN denotes mesenchyme
T3154 765-776 VBG denotes surrounding
T3155 777-780 DT denotes the
T3156 790-793 NN denotes bud
T3157 781-789 JJ denotes ureteric
T3158 793-795 , denotes ,
T3159 795-798 CC denotes yet
T3160 799-809 RB denotes relatively
T3161 810-816 JJ denotes normal
T3162 825-834 NN denotes formation
T3163 817-824 NN denotes nephron
T3164 834-836 , denotes ,
T3165 836-838 IN denotes as
T3166 839-847 VBN denotes measured
T3167 848-850 IN denotes by
T3168 851-860 NN denotes histology
T3169 860-862 , denotes ,
T3170 862-870 JJ denotes confocal
T3171 871-879 NN denotes analysis
T3172 879-881 , denotes ,
T3173 881-883 FW denotes in
T3174 884-888 FW denotes situ
T3175 889-902 NN denotes hybridization
T3176 903-906 CC denotes and
T3177 907-917 NN denotes microarray
T3178 918-926 NN denotes analysis
T3179 926-927 . denotes .
T3180 927-1092 sentence denotes The obvious conclusion is that in mammals, unlike Drosophila, Pygopus-mediated canonical Wnt signaling is not absolutely necessary in most developing organ systems.
T3181 928-931 DT denotes The
T3182 940-950 NN denotes conclusion
T3183 932-939 JJ denotes obvious
T3184 951-953 VBZ denotes is
T3185 954-958 IN denotes that
T3186 1031-1033 VBZ denotes is
T3187 959-961 IN denotes in
T3188 962-969 NNS denotes mammals
T3189 969-971 , denotes ,
T3190 971-977 IN denotes unlike
T3191 978-988 NNP denotes Drosophila
T3192 988-990 , denotes ,
T3193 990-997 NN denotes Pygopus
T3194 998-1006 VBN denotes mediated
T3195 997-998 HYPH denotes -
T3196 1021-1030 NN denotes signaling
T3197 1007-1016 JJ denotes canonical
T3198 1017-1020 NN denotes Wnt
T3199 1034-1037 RB denotes not
T3200 1038-1048 RB denotes absolutely
T3201 1049-1058 JJ denotes necessary
T3202 1059-1061 IN denotes in
T3203 1062-1066 JJS denotes most
T3204 1084-1091 NNS denotes systems
T3205 1067-1077 VBG denotes developing
T3206 1078-1083 NN denotes organ
T3207 1091-1092 . denotes .
R751 T3017 T3018 det The,genome
R752 T3018 T3020 nsubj genome,carries
R753 T3019 T3018 amod mammalian,genome
R754 T3021 T3022 nummod two,orthologs
R755 T3022 T3020 dobj orthologs,carries
R756 T3023 T3021 punct ", ",two
R757 T3024 T3021 cc and,two
R758 T3025 T3026 advmod only,two
R759 T3026 T3021 conj two,two
R760 T3027 T3022 punct ", ",orthologs
R761 T3028 T3022 prep of,orthologs
R762 T3029 T3030 compound Drosophila,Pygo
R763 T3030 T3028 pobj Pygo,of
R764 T3031 T3022 punct ", ",orthologs
R765 T3032 T3022 appos Pygo1,orthologs
R766 T3033 T3032 cc and,Pygo1
R767 T3140 T3139 compound branching,morphogenesis
R768 T3141 T3139 prep of,morphogenesis
R769 T3142 T3143 det the,bud
R770 T3143 T3141 pobj bud,of
R771 T3144 T3143 amod ureteric,bud
R772 T3145 T3139 punct ", ",morphogenesis
R773 T3146 T3139 cc and,morphogenesis
R774 T3147 T3139 conj expansion,morphogenesis
R775 T3148 T3147 prep of,expansion
R776 T3149 T3150 det the,zone
R777 T3150 T3148 pobj zone,of
R778 T3151 T3150 prep of,zone
R779 T3152 T3153 amod condensed,mesenchyme
R780 T3153 T3151 pobj mesenchyme,of
R781 T3034 T3032 conj Pygo2,Pygo1
R782 T3154 T3150 acl surrounding,zone
R783 T3035 T3036 punct [,14
R784 T3155 T3156 det the,bud
R785 T3036 T3020 parataxis 14,carries
R786 T3037 T3036 nummod 8,14
R787 T3156 T3154 dobj bud,surrounding
R788 T3038 T3036 punct ",",14
R789 T3039 T3036 nummod 9,14
R790 T3040 T3036 punct ",",14
R791 T3157 T3156 amod ureteric,bud
R792 T3041 T3036 punct ],14
R793 T3042 T3020 punct .,carries
R794 T3158 T3139 punct ", ",morphogenesis
R795 T3044 T3045 prep In,generated
R796 T3159 T3139 cc yet,morphogenesis
R797 T3046 T3047 det this,report
R798 T3047 T3044 pobj report,In
R799 T3160 T3161 advmod relatively,normal
R800 T3048 T3045 punct ", ",generated
R801 T3049 T3045 nsubj we,generated
R802 T3050 T3051 amod targeted,mutations
R803 T3051 T3045 dobj mutations,generated
R804 T3161 T3162 amod normal,formation
R805 T3052 T3051 prep of,mutations
R806 T3053 T3052 pobj Pygo1,of
R807 T3054 T3053 cc and,Pygo1
R808 T3162 T3139 conj formation,morphogenesis
R809 T3055 T3053 conj Pygo2,Pygo1
R810 T3056 T3057 aux to,determine
R811 T3163 T3162 compound nephron,formation
R812 T3057 T3045 advcl determine,generated
R813 T3058 T3059 poss their,functions
R814 T3059 T3057 dobj functions,determine
R815 T3060 T3057 punct ", ",determine
R816 T3061 T3057 prep with,determine
R817 T3062 T3063 det a,interest
R818 T3164 T3137 punct ", ",showed
R819 T3063 T3061 pobj interest,with
R820 T3064 T3063 amod particular,interest
R821 T3065 T3063 prep in,interest
R822 T3165 T3166 mark as,measured
R823 T3066 T3067 det the,contributions
R824 T3067 T3065 pobj contributions,in
R825 T3166 T3137 advcl measured,showed
R826 T3068 T3067 prep of,contributions
R827 T3069 T3070 det these,genes
R828 T3167 T3166 prep by,measured
R829 T3070 T3068 pobj genes,of
R830 T3071 T3067 prep to,contributions
R831 T3072 T3073 amod canonical,signaling
R832 T3168 T3167 pobj histology,by
R833 T3073 T3071 pobj signaling,to
R834 T3074 T3073 compound Wnt,signaling
R835 T3075 T3073 prep during,signaling
R836 T3169 T3168 punct ", ",histology
R837 T3076 T3077 compound kidney,development
R838 T3077 T3075 pobj development,during
R839 T3078 T3045 punct .,generated
R840 T3170 T3171 amod confocal,analysis
R841 T3080 T3081 det The,embryos
R842 T3081 T3087 nsubj embryos,showed
R843 T3171 T3168 conj analysis,histology
R844 T3082 T3081 amod resulting,embryos
R845 T3083 T3084 amod double,homozygous
R846 T3084 T3081 amod homozygous,embryos
R847 T3172 T3171 punct ", ",analysis
R848 T3085 T3084 punct -,homozygous
R849 T3086 T3081 compound mutant,embryos
R850 T3173 T3174 advmod in,situ
R851 T3088 T3089 det a,reduction
R852 T3089 T3087 dobj reduction,showed
R853 T3174 T3175 amod situ,hybridization
R854 T3090 T3091 npadvmod context,dependent
R855 T3091 T3089 amod dependent,reduction
R856 T3092 T3091 punct -,dependent
R857 T3093 T3089 prep in,reduction
R858 T3175 T3171 conj hybridization,analysis
R859 T3094 T3095 amod canonical,signaling
R860 T3095 T3093 pobj signaling,in
R861 T3176 T3175 cc and,hybridization
R862 T3096 T3095 compound Wnt,signaling
R863 T3097 T3098 mark as,measured
R864 T3098 T3087 advcl measured,showed
R865 T3177 T3178 compound microarray,analysis
R866 T3099 T3098 agent by,measured
R867 T3100 T3101 compound Wnt,reporter
R868 T3178 T3175 conj analysis,hybridization
R869 T3101 T3102 compound reporter,transgene
R870 T3102 T3103 compound transgene,expression
R871 T3103 T3099 pobj expression,by
R872 T3179 T3131 punct .,focused
R873 T3104 T3087 punct .,showed
R874 T3181 T3182 det The,conclusion
R875 T3106 T3107 nsubj Development,remained
R876 T3108 T3107 punct ", ",remained
R877 T3182 T3184 nsubj conclusion,is
R878 T3109 T3107 advmod however,remained
R879 T3110 T3107 punct ", ",remained
R880 T3111 T3112 advmod surprisingly,normal
R881 T3183 T3182 amod obvious,conclusion
R882 T3112 T3107 acomp normal,remained
R883 T3113 T3107 punct ", ",remained
R884 T3114 T3107 prep with,remained
R885 T3185 T3186 mark that,is
R886 T3115 T3114 pobj survival,with
R887 T3116 T3115 prep to,survival
R888 T3117 T3116 pobj birth,to
R889 T3118 T3115 cc and,survival
R890 T3186 T3184 ccomp is,is
R891 T3119 T3120 amod few,defects
R892 T3120 T3115 conj defects,survival
R893 T3121 T3120 amod apparent,defects
R894 T3122 T3120 prep in,defects
R895 T3123 T3124 amod most,systems
R896 T3187 T3186 prep in,is
R897 T3124 T3122 pobj systems,in
R898 T3125 T3124 compound organ,systems
R899 T3126 T3107 punct .,remained
R900 T3128 T3129 poss Our,analysis
R901 T3188 T3187 pobj mammals,in
R902 T3129 T3131 nsubj analysis,focused
R903 T3130 T3129 amod phenotypic,analysis
R905 T3132 T3131 prep on,focused
R906 T3133 T3134 det the,kidney
R907 T3190 T3188 prep unlike,mammals
R908 T3134 T3132 pobj kidney,on
R909 T3135 T3134 punct ", ",kidney
R910 T3136 T3137 dep which,showed
R911 T3137 T3134 relcl showed,kidney
R912 T3191 T3190 pobj Drosophila,unlike
R913 T3138 T3139 amod altered,morphogenesis
R914 T3139 T3137 dobj morphogenesis,showed
R915 T3192 T3186 punct ", ",is
R916 T3193 T3194 npadvmod Pygopus,mediated
R917 T3194 T3196 amod mediated,signaling
R918 T3195 T3194 punct -,mediated
R919 T3196 T3186 nsubj signaling,is
R920 T3197 T3196 amod canonical,signaling
R921 T3198 T3196 compound Wnt,signaling
R922 T3199 T3186 neg not,is
R923 T3200 T3201 advmod absolutely,necessary
R924 T3201 T3186 acomp necessary,is
R925 T3202 T3186 prep in,is
R926 T3203 T3204 amod most,systems
R927 T3204 T3202 pobj systems,in
R928 T3205 T3204 amod developing,systems
R929 T3206 T3204 compound organ,systems
R930 T3207 T3184 punct .,is
R904 T3189 T3188 punct ", ",mammals

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2603 4-13 NCBITaxon:40674 denotes mammalian
T2604 14-20 SO_EXT:0001026 denotes genome
T2605 48-57 SO_EXT:0000855 denotes orthologs
T2606 61-71 NCBITaxon:7215 denotes Drosophila
T2607 72-76 PR_EXT:Pygo denotes Pygo
T2608 78-83 PR_EXT:000013523 denotes Pygo1
T2609 88-93 PR_EXT:000013524 denotes Pygo2
T2610 142-151 SO_EXT:sequence_alteration_entity_or_process denotes mutations
T2611 155-160 PR_EXT:000013523 denotes Pygo1
T2612 165-170 PR_EXT:000013524 denotes Pygo2
T2613 258-263 SO_EXT:0000704 denotes genes
T2614 267-290 GO:0060070 denotes canonical Wnt signaling
T2615 298-304 UBERON:0002113 denotes kidney
T2616 298-316 GO:0001822 denotes kidney development
T2617 350-356 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T2618 357-364 UBERON:0000922 denotes embryos
T2619 405-428 GO:0060070 denotes canonical Wnt signaling
T2620 457-466 SO_EXT:0000902 denotes transgene
T2621 467-477 GO:0010467 denotes expression
T2622 548-553 GO:0007567 denotes birth
T2623 587-600 UBERON:0000467 denotes organ systems
T2624 641-647 UBERON:0002113 denotes kidney
T2625 670-696 _FRAGMENT denotes branching morphogenesis of
T2626 701-713 GO:0001658 denotes ureteric bud
T2627 701-713 UBERON:0000084 denotes ureteric bud
T2628 754-764 UBERON:0003104 denotes mesenchyme
T2629 781-793 UBERON:0000084 denotes ureteric bud
T2630 817-824 UBERON:0001285 denotes nephron
T2631 817-834 GO:0072006 denotes nephron formation
T2632 889-902 GO:0097617 denotes hybridization
T2633 962-969 NCBITaxon:40674 denotes mammals
T2634 978-988 NCBITaxon:7215 denotes Drosophila
T2635 990-997 PR_EXT:Q9V9W8 denotes Pygopus
T2636 1007-1030 GO:0060070 denotes canonical Wnt signaling
T2637 1078-1091 UBERON:0000467 denotes organ systems
R397 T2626 T2625 _lexicallyChainedTo ureteric bud,branching morphogenesis of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2490 4-13 NCBITaxon:40674 denotes mammalian
T2491 14-20 SO:0001026 denotes genome
T2492 48-57 SO:0000855 denotes orthologs
T2493 61-71 NCBITaxon:7215 denotes Drosophila
T2494 78-83 PR:000013523 denotes Pygo1
T2495 88-93 PR:000013524 denotes Pygo2
T2496 155-160 PR:000013523 denotes Pygo1
T2497 165-170 PR:000013524 denotes Pygo2
T2498 258-263 SO:0000704 denotes genes
T2499 267-290 GO:0060070 denotes canonical Wnt signaling
T2500 298-304 UBERON:0002113 denotes kidney
T2501 298-316 GO:0001822 denotes kidney development
T2502 357-364 UBERON:0000922 denotes embryos
T2503 405-428 GO:0060070 denotes canonical Wnt signaling
T2504 457-466 SO:0000902 denotes transgene
T2505 467-477 GO:0010467 denotes expression
T2506 548-553 GO:0007567 denotes birth
T2507 587-600 UBERON:0000467 denotes organ systems
T2508 641-647 UBERON:0002113 denotes kidney
T2509 670-696 _FRAGMENT denotes branching morphogenesis of
T2510 701-713 GO:0001658 denotes ureteric bud
T2511 701-713 UBERON:0000084 denotes ureteric bud
T2512 754-764 UBERON:0003104 denotes mesenchyme
T2513 781-793 UBERON:0000084 denotes ureteric bud
T2514 817-824 UBERON:0001285 denotes nephron
T2515 817-834 GO:0072006 denotes nephron formation
T2516 889-902 GO:0097617 denotes hybridization
T2517 962-969 NCBITaxon:40674 denotes mammals
T2518 978-988 NCBITaxon:7215 denotes Drosophila
T2519 990-997 PR:Q9V9W8 denotes Pygopus
T2520 1007-1030 GO:0060070 denotes canonical Wnt signaling
T2521 1078-1091 UBERON:0000467 denotes organ systems
R395 T2510 T2509 _lexicallyChainedTo ureteric bud,branching morphogenesis of

2_test

Id Subject Object Predicate Lexical cue
17425782-12163411-8469442 95-96 12163411 denotes 8
17425782-11955446-8469443 97-98 11955446 denotes 9
17425782-15234002-8469444 99-101 15234002 denotes 14