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PMC:1858683 / 43450-44464 JSONTXT

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Id Subject Object Predicate Lexical cue
T21384 940-941 HYPH denotes -
T21382 939-940 NN denotes p
T21381 949-953 CD denotes 0.05
T21380 938-939 -LRB- denotes (
T21379 925-937 NN denotes significance
T21378 913-924 JJ denotes statistical
T21377 909-912 CC denotes and
T21376 897-901 NN denotes fold
T21375 889-896 JJ denotes average
T21374 902-908 NN denotes change
T21373 875-879 IN denotes than
T21372 880-888 RB denotes two-fold
T21371 867-874 JJR denotes greater
T21370 864-866 IN denotes of
T21369 858-863 NN denotes basis
T21368 854-857 DT denotes the
T21367 851-853 IN denotes on
T21366 837-841 VBD denotes were
T21365 842-850 VBN denotes selected
T21364 831-836 NNS denotes Genes
T21363 830-955 sentence denotes Genes were selected on the basis of greater than two-fold average fold change and statistical significance (p-value < 0.05).
T21362 829-830 . denotes .
T21361 828-829 -RRB- denotes )
T21360 825-828 NNP denotes USA
T21359 823-825 , denotes ,
T21358 821-823 NNP denotes CA
T21357 819-821 , denotes ,
T21356 815-819 NNP denotes Alto
T21355 810-814 NNP denotes Palo
T21354 808-810 , denotes ,
T21353 788-795 NNP denotes Agilent
T21352 796-808 NNP denotes Technologies
T21351 787-788 -LRB- denotes (
T21350 783-786 CD denotes 7.3
T21349 780-782 NNP denotes GX
T21348 769-779 NNP denotes GeneSpring
T21347 764-768 IN denotes into
T21346 755-763 VBN denotes imported
T21345 751-754 CC denotes and
T21344 749-750 -RRB- denotes )
T21343 741-749 NNP denotes Illumina
T21342 740-741 : denotes ;
T21341 729-739 NNP denotes Beadstudio
T21340 728-729 -LRB- denotes (
T21339 710-718 NN denotes analysis
T21338 719-727 NN denotes software
T21337 705-709 NNS denotes data
T21336 700-704 IN denotes from
T21335 686-690 VBD denotes were
T21334 680-685 NN denotes probe
T21333 675-679 DT denotes each
T21332 672-674 IN denotes of
T21331 691-699 VBN denotes obtained
T21330 653-659 NN denotes signal
T21329 660-671 NNS denotes intensities
T21328 649-652 JJ denotes Raw
T21327 648-830 sentence denotes Raw signal intensities of each probe were obtained from data analysis software (Beadstudio ;Illumina) and imported into GeneSpring GX 7.3 (Agilent Technologies, Palo Alto, CA, USA).
T21326 647-648 . denotes .
T21325 637-647 NN denotes triplicate
T21324 626-636 JJ denotes biological
T21323 623-625 IN denotes in
T21322 609-612 VBD denotes was
T21321 601-608 NNS denotes kidneys
T21320 595-596 HYPH denotes -
T21319 591-595 JJ denotes wild
T21318 596-600 NN denotes type
T21317 584-590 JJ denotes normal
T21316 580-583 CC denotes and
T21315 575-579 JJ denotes null
T21314 568-569 HYPH denotes /
T21313 569-574 NN denotes Pygo2
T21312 563-568 NN denotes Pygo1
T21311 560-562 IN denotes of
T21310 613-622 VBN denotes performed
T21309 551-559 NN denotes analysis
T21308 540-550 NN denotes Microarray
T21307 539-648 sentence denotes Microarray analysis of Pygo1/Pygo2 null and normal wild-type kidneys was performed in biological triplicate.
T21306 538-539 . denotes .
T21305 537-538 -RRB- denotes ]
T21304 535-537 CD denotes 36
T21303 534-535 -LRB- denotes [
T21302 513-523 RB denotes previously
T21301 524-533 VBN denotes described
T21300 510-512 IN denotes as
T21299 505-509 NNS denotes tags
T21298 496-504 NN denotes sequence
T21297 486-495 VBD denotes expressed
T21296 482-485 CC denotes and
T21295 476-481 NNS denotes genes
T21294 470-475 CD denotes 47000
T21293 465-469 IN denotes over
T21292 462-464 IN denotes of
T21291 453-461 NN denotes coverage
T21290 443-452 VBG denotes providing
T21289 441-442 -RRB- denotes )
T21288 439-441 NNP denotes CA
T21287 437-439 , denotes ,
T21286 432-437 NNP denotes Diego
T21285 428-431 NNP denotes San
T21284 426-428 , denotes ,
T21283 418-426 NNP denotes Illumina
T21282 416-417 : denotes ;
T21281 397-407 NN denotes expression
T21280 395-396 CD denotes 6
T21279 394-395 HYPH denotes -
T21278 389-394 NNP denotes Mouse
T21277 408-416 NN denotes Beadchip
T21276 381-388 NNP denotes Sentrix
T21275 380-381 -LRB- denotes (
T21274 368-379 NNS denotes microarrays
T21273 365-367 IN denotes to
T21272 350-353 VBD denotes was
T21271 354-364 VBN denotes hybridized
T21270 346-349 NN denotes RNA
T21269 338-345 VBN denotes Labeled
T21268 337-539 sentence denotes Labeled RNA was hybridized to microarrays (Sentrix Mouse-6 expression Beadchip; Illumina, San Diego, CA) providing coverage of over 47000 genes and expressed sequence tags as previously described [36].
T21267 336-337 . denotes .
T21266 335-336 -RRB- denotes )
T21265 332-335 NNP denotes USA
T21264 330-332 , denotes ,
T21263 328-330 NNP denotes WI
T21262 326-328 , denotes ,
T21261 319-326 NNP denotes Madison
T21260 317-319 , denotes ,
T21259 308-317 NNP denotes Epicentre
T21258 306-307 : denotes ;
T21257 298-299 HYPH denotes -
T21256 299-303 NN denotes aRNA
T21255 288-298 NN denotes Aminoallyl
T21254 281-282 HYPH denotes -
T21253 282-287 JJ denotes Round
T21252 280-281 CD denotes 1
T21251 304-306 NN denotes Ki
T21250 270-279 NNP denotes TargetAmp
T21249 269-270 -LRB- denotes (
T21248 254-264 JJ denotes commercial
T21247 265-268 NN denotes kit
T21246 252-253 DT denotes a
T21245 246-251 VBG denotes using
T21244 238-245 VBN denotes labeled
T21243 234-237 CC denotes and
T21242 220-223 VBD denotes was
T21241 216-219 NN denotes RNA
T21240 210-215 JJ denotes total
T21239 207-209 IN denotes of
T21238 205-206 -RRB- denotes )
T21237 199-202 CD denotes 300
T21236 203-205 NN denotes ng
T21235 198-199 -LRB- denotes (
T21234 224-233 VBN denotes processed
T21233 190-197 NN denotes aliquot
T21232 187-189 DT denotes An
T21231 186-337 sentence denotes An aliquot (300 ng) of total RNA was processed and labeled using a commercial kit (TargetAmp 1-Round Aminoallyl-aRNA Ki; Epicentre, Madison, WI, USA).
T21230 185-186 . denotes .
T21229 184-185 -RRB- denotes )
T21228 179-181 , denotes ,
T21227 177-179 NNP denotes CA
T21226 175-177 , denotes ,
T21225 170-175 NNP denotes Jolla
T21224 167-169 NNP denotes La
T21223 181-184 NNP denotes USA
T21222 165-166 : denotes ;
T21221 152-161 NNP denotes Microprep
T21220 148-151 NNP denotes RNA
T21219 137-147 NNP denotes Absolutely
T21218 162-165 NN denotes Kit
T21217 126-136 NNP denotes Stratagene
T21216 125-126 -LRB- denotes (
T21215 110-120 JJ denotes commercial
T21214 121-124 NN denotes kit
T21213 108-109 DT denotes a
T21212 102-107 VBG denotes using
T21211 80-88 NN denotes compound
T21210 89-93 JJ denotes null
T21209 73-74 HYPH denotes /
T21208 74-79 NN denotes Pygo2
T21207 68-73 NN denotes Pygo1
T21206 64-67 CC denotes and
T21205 94-101 NNS denotes embryos
T21204 57-63 JJ denotes normal
T21203 52-56 IN denotes from
T21202 42-51 VBN denotes dissected
T21201 34-41 NNS denotes kidneys
T21200 28-33 NN denotes E18.5
T21199 23-27 IN denotes from
T21198 10-13 VBD denotes was
T21197 14-22 VBN denotes isolated
T21196 6-9 NN denotes RNA
T21195 0-5 JJ denotes Total
T21397 1013-1014 . denotes .
T21396 1008-1012 IN denotes from
T21395 994-998 VBD denotes were
T21394 999-1007 VBN denotes obtained
T21393 981-987 NN denotes target
T21392 977-980 NN denotes Wnt
T21391 988-993 NNS denotes genes
T21390 967-976 VBN denotes described
T21389 956-966 RB denotes Previously
T21388 955-1014 sentence denotes Previously described Wnt target genes were obtained from .
T21387 954-955 . denotes .
T21386 953-954 -RRB- denotes )
T21385 947-948 SYM denotes <
T21383 941-946 NN denotes value
R5980 T21195 T21196 amod Total,RNA
R5981 T21196 T21197 nsubjpass RNA,isolated
R5982 T21198 T21197 auxpass was,isolated
R5983 T21199 T21197 prep from,isolated
R5984 T21200 T21201 compound E18.5,kidneys
R5985 T21201 T21199 pobj kidneys,from
R5986 T21202 T21201 acl dissected,kidneys
R5987 T21203 T21202 prep from,dissected
R5988 T21204 T21205 amod normal,embryos
R5989 T21205 T21203 pobj embryos,from
R5990 T21206 T21204 cc and,normal
R5991 T21207 T21208 compound Pygo1,Pygo2
R5992 T21208 T21210 npadvmod Pygo2,null
R5993 T21209 T21208 punct /,Pygo2
R5994 T21210 T21204 conj null,normal
R5995 T21211 T21210 npadvmod compound,null
R5996 T21212 T21197 advcl using,isolated
R5997 T21213 T21214 det a,kit
R5998 T21214 T21212 dobj kit,using
R5999 T21215 T21214 amod commercial,kit
R6000 T21216 T21214 punct (,kit
R6001 T21217 T21218 compound Stratagene,Kit
R6002 T21218 T21214 appos Kit,kit
R6003 T21219 T21218 compound Absolutely,Kit
R6004 T21220 T21218 compound RNA,Kit
R6005 T21221 T21218 compound Microprep,Kit
R6006 T21222 T21223 punct ;,USA
R6007 T21223 T21214 parataxis USA,kit
R6008 T21224 T21225 compound La,Jolla
R6009 T21225 T21223 npadvmod Jolla,USA
R6010 T21226 T21223 punct ", ",USA
R6011 T21227 T21223 npadvmod CA,USA
R6012 T21228 T21223 punct ", ",USA
R6013 T21229 T21223 punct ),USA
R6014 T21230 T21197 punct .,isolated
R6015 T21232 T21233 det An,aliquot
R6016 T21233 T21234 nsubjpass aliquot,processed
R6017 T21235 T21236 punct (,ng
R6018 T21236 T21233 parataxis ng,aliquot
R6019 T21237 T21236 nummod 300,ng
R6020 T21238 T21236 punct ),ng
R6021 T21239 T21233 prep of,aliquot
R6022 T21240 T21241 amod total,RNA
R6023 T21241 T21239 pobj RNA,of
R6024 T21242 T21234 auxpass was,processed
R6025 T21243 T21234 cc and,processed
R6026 T21244 T21234 conj labeled,processed
R6027 T21245 T21244 advcl using,labeled
R6028 T21246 T21247 det a,kit
R6029 T21247 T21245 dobj kit,using
R6030 T21248 T21247 amod commercial,kit
R6031 T21249 T21247 punct (,kit
R6032 T21250 T21251 nmod TargetAmp,Ki
R6033 T21251 T21247 appos Ki,kit
R6034 T21252 T21253 nummod 1,Round
R6035 T21253 T21251 nmod Round,Ki
R6036 T21254 T21253 punct -,Round
R6037 T21255 T21256 compound Aminoallyl,aRNA
R6038 T21256 T21251 compound aRNA,Ki
R6039 T21257 T21256 punct -,aRNA
R6040 T21258 T21259 punct ;,Epicentre
R6041 T21259 T21247 parataxis Epicentre,kit
R6042 T21260 T21259 punct ", ",Epicentre
R6043 T21261 T21259 npadvmod Madison,Epicentre
R6044 T21262 T21259 punct ", ",Epicentre
R6045 T21263 T21259 npadvmod WI,Epicentre
R6046 T21264 T21259 punct ", ",Epicentre
R6047 T21265 T21259 npadvmod USA,Epicentre
R6048 T21266 T21259 punct ),Epicentre
R6049 T21267 T21234 punct .,processed
R6050 T21269 T21270 amod Labeled,RNA
R6051 T21270 T21271 nsubjpass RNA,hybridized
R6052 T21272 T21271 auxpass was,hybridized
R6053 T21273 T21271 prep to,hybridized
R6054 T21274 T21273 pobj microarrays,to
R6055 T21275 T21274 punct (,microarrays
R6056 T21276 T21277 nmod Sentrix,Beadchip
R6057 T21277 T21274 appos Beadchip,microarrays
R6058 T21278 T21277 nmod Mouse,Beadchip
R6059 T21279 T21278 punct -,Mouse
R6060 T21280 T21278 nummod 6,Mouse
R6061 T21281 T21277 compound expression,Beadchip
R6062 T21282 T21283 punct ;,Illumina
R6063 T21283 T21274 parataxis Illumina,microarrays
R6064 T21284 T21283 punct ", ",Illumina
R6065 T21285 T21286 compound San,Diego
R6066 T21286 T21283 npadvmod Diego,Illumina
R6067 T21287 T21283 punct ", ",Illumina
R6068 T21288 T21283 npadvmod CA,Illumina
R6069 T21289 T21283 punct ),Illumina
R6070 T21290 T21274 acl providing,microarrays
R6071 T21291 T21290 dobj coverage,providing
R6072 T21292 T21291 prep of,coverage
R6073 T21293 T21294 quantmod over,47000
R6074 T21294 T21295 nummod 47000,genes
R6075 T21295 T21292 pobj genes,of
R6076 T21296 T21271 cc and,hybridized
R6077 T21297 T21271 conj expressed,hybridized
R6078 T21298 T21299 compound sequence,tags
R6079 T21299 T21297 dobj tags,expressed
R6080 T21300 T21301 mark as,described
R6081 T21301 T21297 advcl described,expressed
R6082 T21302 T21301 advmod previously,described
R6083 T21303 T21304 punct [,36
R6084 T21304 T21301 parataxis 36,described
R6085 T21305 T21304 punct ],36
R6086 T21306 T21271 punct .,hybridized
R6087 T21308 T21309 compound Microarray,analysis
R6088 T21309 T21310 nsubjpass analysis,performed
R6089 T21311 T21309 prep of,analysis
R6090 T21312 T21313 compound Pygo1,Pygo2
R6091 T21313 T21315 npadvmod Pygo2,null
R6092 T21314 T21313 punct /,Pygo2
R6093 T21315 T21311 pobj null,of
R6094 T21316 T21315 cc and,null
R6095 T21317 T21318 amod normal,type
R6096 T21318 T21321 compound type,kidneys
R6097 T21319 T21318 amod wild,type
R6098 T21320 T21318 punct -,type
R6099 T21321 T21315 conj kidneys,null
R6100 T21322 T21310 auxpass was,performed
R6101 T21323 T21310 prep in,performed
R6102 T21324 T21325 amod biological,triplicate
R6103 T21325 T21323 pobj triplicate,in
R6104 T21326 T21310 punct .,performed
R6105 T21328 T21329 amod Raw,intensities
R6106 T21329 T21331 nsubjpass intensities,obtained
R6107 T21330 T21329 compound signal,intensities
R6108 T21332 T21329 prep of,intensities
R6109 T21333 T21334 det each,probe
R6110 T21334 T21332 pobj probe,of
R6111 T21335 T21331 auxpass were,obtained
R6112 T21336 T21331 prep from,obtained
R6113 T21337 T21338 compound data,software
R6114 T21338 T21336 pobj software,from
R6115 T21339 T21338 compound analysis,software
R6116 T21340 T21338 punct (,software
R6117 T21341 T21338 appos Beadstudio,software
R6118 T21342 T21343 punct ;,Illumina
R6119 T21343 T21338 parataxis Illumina,software
R6120 T21344 T21343 punct ),Illumina
R6121 T21345 T21331 cc and,obtained
R6122 T21346 T21331 conj imported,obtained
R6123 T21347 T21346 prep into,imported
R6124 T21348 T21349 compound GeneSpring,GX
R6125 T21349 T21347 pobj GX,into
R6126 T21350 T21349 nummod 7.3,GX
R6127 T21351 T21352 punct (,Technologies
R6128 T21352 T21349 parataxis Technologies,GX
R6129 T21353 T21352 compound Agilent,Technologies
R6130 T21354 T21352 punct ", ",Technologies
R6131 T21355 T21356 compound Palo,Alto
R6132 T21356 T21352 npadvmod Alto,Technologies
R6133 T21357 T21352 punct ", ",Technologies
R6134 T21358 T21352 npadvmod CA,Technologies
R6135 T21359 T21352 punct ", ",Technologies
R6136 T21360 T21352 npadvmod USA,Technologies
R6137 T21361 T21352 punct ),Technologies
R6138 T21362 T21331 punct .,obtained
R6139 T21364 T21365 nsubjpass Genes,selected
R6140 T21366 T21365 auxpass were,selected
R6141 T21367 T21365 prep on,selected
R6142 T21368 T21369 det the,basis
R6143 T21369 T21367 pobj basis,on
R6144 T21370 T21369 prep of,basis
R6145 T21371 T21372 amod greater,two-fold
R6146 T21372 T21374 nummod two-fold,change
R6147 T21373 T21372 quantmod than,two-fold
R6148 T21374 T21370 pobj change,of
R6149 T21375 T21374 amod average,change
R6150 T21376 T21374 compound fold,change
R6151 T21377 T21374 cc and,change
R6152 T21378 T21379 amod statistical,significance
R6153 T21379 T21374 conj significance,change
R6154 T21380 T21381 punct (,0.05
R6155 T21381 T21379 parataxis 0.05,significance
R6156 T21382 T21383 compound p,value
R6157 T21383 T21381 nsubj value,0.05
R6158 T21384 T21383 punct -,value
R6159 T21385 T21381 punct <,0.05
R6160 T21386 T21381 punct ),0.05
R6161 T21387 T21365 punct .,selected
R6162 T21389 T21390 advmod Previously,described
R6163 T21390 T21391 amod described,genes
R6164 T21391 T21394 nsubjpass genes,obtained
R6165 T21392 T21391 compound Wnt,genes
R6166 T21393 T21391 compound target,genes
R6167 T21395 T21394 auxpass were,obtained
R6168 T21396 T21394 prep from,obtained
R6169 T21397 T21394 punct .,obtained

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21191 988-993 SO_EXT:0000704 denotes genes
T21190 831-836 SO_EXT:0000704 denotes Genes
T21189 680-685 CHEBI_SO_EXT:molecular_probe denotes probe
T21188 626-636 CHEBI_GO_EXT:biological_process_or_quality_or_role denotes biological
T21187 601-608 UBERON:0002113 denotes kidneys
T21186 591-600 SO_EXT:wild_type_entity_or_quality denotes wild-type
T21185 575-579 SO_EXT:sequence_nullness denotes null
T21184 569-574 PR_EXT:000013524 denotes Pygo2
T21183 563-568 PR_EXT:000013523 denotes Pygo1
T21182 505-509 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes tags
T21181 486-509 SO_EXT:0000345 denotes expressed sequence tags
T21180 486-495 GO:0010467 denotes expressed
T21179 476-481 SO_EXT:0000704 denotes genes
T21178 397-407 GO:0010467 denotes expression
T21177 389-394 NCBITaxon:10088 denotes Mouse
T21176 354-364 GO:0097617 denotes hybridized
T21175 346-349 CHEBI_SO_EXT:RNA denotes RNA
T21174 338-345 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes Labeled
T21173 238-245 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T21172 216-219 CHEBI_SO_EXT:RNA denotes RNA
T21171 148-151 CHEBI_SO_EXT:RNA denotes RNA
T21170 94-101 UBERON:0000922 denotes embryos
T21169 89-93 SO_EXT:sequence_nullness denotes null
T21168 74-79 PR_EXT:000013524 denotes Pygo2
T21167 68-73 PR_EXT:000013523 denotes Pygo1
T21166 34-41 UBERON:0002113 denotes kidneys
T21165 6-9 CHEBI_SO_EXT:RNA denotes RNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21164 988-993 SO:0000704 denotes genes
T21163 831-836 SO:0000704 denotes Genes
T21162 601-608 UBERON:0002113 denotes kidneys
T21161 569-574 PR:000013524 denotes Pygo2
T21160 563-568 PR:000013523 denotes Pygo1
T21159 486-509 SO:0000345 denotes expressed sequence tags
T21158 486-495 GO:0010467 denotes expressed
T21157 476-481 SO:0000704 denotes genes
T21156 397-407 GO:0010467 denotes expression
T21155 389-394 NCBITaxon:10088 denotes Mouse
T21154 354-364 GO:0097617 denotes hybridized
T21153 94-101 UBERON:0000922 denotes embryos
T21152 74-79 PR:000013524 denotes Pygo2
T21151 68-73 PR:000013523 denotes Pygo1
T21150 34-41 UBERON:0002113 denotes kidneys

2_test

Id Subject Object Predicate Lexical cue
17425782-16581055-8469491 535-537 16581055 denotes 36