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PMC:1858683 / 42826-43428 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T20776 557-558 SYM denotes =
T20775 555-556 NN denotes n
T20774 559-560 CD denotes 8
T20773 554-555 -LRB- denotes (
T20772 552-553 SYM denotes -
T20771 551-552 HYPH denotes /
T20770 550-551 SYM denotes +
T20769 545-550 NN denotes Pygo2
T20768 543-544 : denotes ;
T20767 541-542 SYM denotes -
T20766 540-541 HYPH denotes /
T20765 539-540 SYM denotes -
T20764 534-539 NN denotes Pygo1
T20763 532-534 , denotes ,
T20762 531-532 -RRB- denotes )
T20761 528-529 SYM denotes =
T20760 526-527 NN denotes n
T20759 530-531 CD denotes 6
T20758 525-526 -LRB- denotes (
T20757 523-524 SYM denotes +
T20756 522-523 HYPH denotes /
T20755 521-522 SYM denotes +
T20754 516-521 NN denotes Pygo2
T20753 514-515 : denotes ;
T20752 512-513 SYM denotes -
T20751 511-512 HYPH denotes /
T20750 510-511 SYM denotes +
T20749 505-510 NN denotes Pygo1
T20748 503-505 , denotes ,
T20747 502-503 -RRB- denotes )
T20746 499-500 SYM denotes =
T20745 497-498 NN denotes n
T20744 501-502 CD denotes 5
T20743 496-497 -LRB- denotes (
T20742 481-495 JJ denotes non-transgenic
T20741 595-601 NNS denotes groups
T20740 477-480 DT denotes the
T20739 470-476 IN denotes except
T20738 468-469 CD denotes 4
T20737 465-467 IN denotes of
T20736 453-459 NN denotes sample
T20735 460-464 NN denotes size
T20734 451-452 DT denotes a
T20733 448-450 IN denotes by
T20732 432-435 VBD denotes was
T20731 436-447 VBN denotes represented
T20730 423-431 NN denotes genotype
T20729 418-422 DT denotes Each
T20728 417-602 sentence denotes Each genotype was represented by a sample size of 4 except the non-transgenic (n = 5), Pygo1+/- ; Pygo2+/+ (n = 6), Pygo1-/- ; Pygo2+/- (n = 8), and Pygo1-/- ; Pygo2-/- (n = 6) groups.
T20727 416-417 . denotes .
T20726 409-416 NN denotes protein
T20725 403-408 JJ denotes total
T20724 400-402 IN denotes to
T20723 390-399 VBG denotes according
T20722 378-389 VBG denotes normalizing
T20721 376-378 , denotes ,
T20720 375-376 -RRB- denotes )
T20719 373-375 NNP denotes IN
T20718 371-373 , denotes ,
T20717 359-371 NNP denotes Indianapolis
T20716 357-359 , denotes ,
T20715 352-357 NNP denotes Roche
T20714 351-352 -LRB- denotes (
T20713 345-346 -RRB- denotes )
T20712 334-345 NN denotes immunoassay
T20711 326-327 HYPH denotes -
T20710 327-333 VBN denotes linked
T20709 320-326 NN denotes Enzyme
T20708 319-320 -LRB- denotes (
T20707 313-318 NNP denotes ELISA
T20706 308-309 HYPH denotes -
T20705 309-312 NN denotes Gal
T20704 307-308 NN denotes β
T20703 347-350 NN denotes kit
T20702 305-306 DT denotes a
T20701 299-304 VBG denotes using
T20700 282-286 VBD denotes were
T20699 271-281 NN denotes expression
T20698 266-267 HYPH denotes -
T20697 265-266 NN denotes β
T20696 267-270 NN denotes Gal
T20695 255-264 NN denotes transgene
T20694 252-254 IN denotes in
T20693 287-298 VBN denotes quantitated
T20692 244-251 NNS denotes Changes
T20691 243-417 sentence denotes Changes in transgene β-Gal expression were quantitated using a β-Gal ELISA (Enzyme-linked immunoassay) kit (Roche, Indianapolis, IN), normalizing according to total protein.
T20690 242-243 . denotes .
T20689 239-242 CD denotes 8.0
T20688 236-238 IN denotes to
T20687 218-226 NN denotes staining
T20686 213-214 HYPH denotes -
T20685 214-217 NN denotes gal
T20684 212-213 NN denotes X
T20683 227-235 NN denotes solution
T20682 208-211 DT denotes the
T20681 205-207 IN denotes of
T20680 202-204 NN denotes pH
T20679 191-201 VBG denotes increasing
T20678 188-190 IN denotes by
T20677 170-180 VBG denotes developing
T20676 181-187 NN denotes kidney
T20675 166-169 DT denotes the
T20674 159-165 IN denotes within
T20673 135-136 HYPH denotes -
T20672 136-149 NN denotes galactosidase
T20671 134-135 NN denotes β
T20670 150-158 NN denotes activity
T20669 123-133 JJ denotes endogenous
T20668 116-122 VB denotes reduce
T20667 113-115 TO denotes to
T20666 103-106 VBD denotes was
T20665 107-112 VBN denotes taken
T20664 98-102 NN denotes Care
T20663 97-243 sentence denotes Care was taken to reduce endogenous β-galactosidase activity within the developing kidney by increasing pH of the X-gal staining solution to 8.0.
T20662 96-97 . denotes .
T20661 95-96 -RRB- denotes ]
T20660 93-95 CD denotes 21
T20659 92-93 -LRB- denotes [
T20658 71-81 RB denotes previously
T20657 82-91 VBN denotes described
T20656 68-70 IN denotes as
T20655 54-57 VBD denotes was
T20654 46-53 NNS denotes kidneys
T20653 35-45 VBG denotes developing
T20652 31-34 CC denotes and
T20651 23-30 NNS denotes embryos
T20650 18-22 CC denotes both
T20649 15-17 IN denotes of
T20648 58-67 VBN denotes performed
T20647 6-14 NN denotes staining
T20646 1-2 HYPH denotes -
T20645 2-5 NN denotes gal
T20644 0-1 NN denotes X
T20785 578-583 NN denotes Pygo2
T20784 576-577 : denotes ;
T20783 574-575 SYM denotes -
T20782 573-574 HYPH denotes /
T20794 601-602 . denotes .
T20793 593-594 -RRB- denotes )
T20792 590-591 SYM denotes =
T20791 588-589 NN denotes n
T20790 592-593 CD denotes 6
T20789 587-588 -LRB- denotes (
T20788 585-586 SYM denotes -
T20787 584-585 HYPH denotes /
T20786 583-584 SYM denotes -
T20781 572-573 SYM denotes -
T20780 567-572 NN denotes Pygo1
T20779 563-566 CC denotes and
T20778 561-563 , denotes ,
T20777 560-561 -RRB- denotes )
R5835 T20644 T20645 compound X,gal
R5836 T20645 T20647 compound gal,staining
R5837 T20646 T20645 punct -,gal
R5838 T20647 T20648 nsubjpass staining,performed
R5839 T20649 T20647 prep of,staining
R5840 T20650 T20651 preconj both,embryos
R5841 T20651 T20649 pobj embryos,of
R5842 T20652 T20651 cc and,embryos
R5843 T20653 T20654 amod developing,kidneys
R5844 T20654 T20651 conj kidneys,embryos
R5845 T20655 T20648 auxpass was,performed
R5846 T20656 T20657 mark as,described
R5847 T20657 T20648 advcl described,performed
R5848 T20658 T20657 advmod previously,described
R5849 T20659 T20660 punct [,21
R5850 T20660 T20657 parataxis 21,described
R5851 T20661 T20660 punct ],21
R5852 T20662 T20648 punct .,performed
R5853 T20664 T20665 nsubjpass Care,taken
R5854 T20666 T20665 auxpass was,taken
R5855 T20667 T20668 aux to,reduce
R5856 T20668 T20665 advcl reduce,taken
R5857 T20669 T20670 amod endogenous,activity
R5858 T20670 T20668 dobj activity,reduce
R5859 T20671 T20672 compound β,galactosidase
R5860 T20672 T20670 compound galactosidase,activity
R5861 T20673 T20672 punct -,galactosidase
R5862 T20674 T20668 prep within,reduce
R5863 T20675 T20676 det the,kidney
R5864 T20676 T20674 pobj kidney,within
R5865 T20677 T20676 amod developing,kidney
R5866 T20678 T20668 prep by,reduce
R5867 T20679 T20678 pcomp increasing,by
R5868 T20680 T20679 dobj pH,increasing
R5869 T20681 T20680 prep of,pH
R5870 T20682 T20683 det the,solution
R5871 T20683 T20681 pobj solution,of
R5872 T20684 T20685 compound X,gal
R5873 T20685 T20687 compound gal,staining
R5874 T20686 T20685 punct -,gal
R5875 T20687 T20683 compound staining,solution
R5876 T20688 T20679 prep to,increasing
R5877 T20689 T20688 pobj 8.0,to
R5878 T20690 T20665 punct .,taken
R5879 T20692 T20693 nsubjpass Changes,quantitated
R5880 T20694 T20692 prep in,Changes
R5881 T20695 T20696 compound transgene,Gal
R5882 T20696 T20699 compound Gal,expression
R5883 T20697 T20696 compound β,Gal
R5884 T20698 T20696 punct -,Gal
R5885 T20699 T20694 pobj expression,in
R5886 T20700 T20693 auxpass were,quantitated
R5887 T20701 T20693 advcl using,quantitated
R5888 T20702 T20703 det a,kit
R5889 T20703 T20701 dobj kit,using
R5890 T20704 T20705 nmod β,Gal
R5891 T20705 T20703 nmod Gal,kit
R5892 T20706 T20705 punct -,Gal
R5893 T20707 T20703 nmod ELISA,kit
R5894 T20708 T20707 punct (,ELISA
R5895 T20709 T20710 npadvmod Enzyme,linked
R5896 T20710 T20712 amod linked,immunoassay
R5897 T20711 T20710 punct -,linked
R5898 T20712 T20707 appos immunoassay,ELISA
R5899 T20713 T20703 punct ),kit
R5900 T20714 T20715 punct (,Roche
R5901 T20715 T20703 parataxis Roche,kit
R5902 T20716 T20715 punct ", ",Roche
R5903 T20717 T20715 npadvmod Indianapolis,Roche
R5904 T20718 T20715 punct ", ",Roche
R5905 T20719 T20715 npadvmod IN,Roche
R5906 T20720 T20715 punct ),Roche
R5907 T20721 T20693 punct ", ",quantitated
R5908 T20722 T20693 advcl normalizing,quantitated
R5909 T20723 T20722 prep according,normalizing
R5910 T20724 T20723 prep to,according
R5911 T20725 T20726 amod total,protein
R5912 T20726 T20724 pobj protein,to
R5913 T20727 T20693 punct .,quantitated
R5914 T20729 T20730 det Each,genotype
R5915 T20730 T20731 nsubjpass genotype,represented
R5916 T20732 T20731 auxpass was,represented
R5917 T20733 T20731 agent by,represented
R5918 T20734 T20735 det a,size
R5919 T20735 T20733 pobj size,by
R5920 T20736 T20735 compound sample,size
R5921 T20737 T20735 prep of,size
R5922 T20738 T20737 pobj 4,of
R5923 T20739 T20731 prep except,represented
R5924 T20740 T20741 det the,groups
R5925 T20741 T20739 pobj groups,except
R5926 T20742 T20741 amod non-transgenic,groups
R5927 T20743 T20744 punct (,5
R5928 T20744 T20742 parataxis 5,non-transgenic
R5929 T20745 T20744 nsubj n,5
R5930 T20746 T20744 punct =,5
R5931 T20747 T20744 punct ),5
R5932 T20748 T20742 punct ", ",non-transgenic
R5933 T20749 T20742 conj Pygo1,non-transgenic
R5934 T20750 T20749 punct +,Pygo1
R5935 T20751 T20749 punct /,Pygo1
R5936 T20752 T20749 punct -,Pygo1
R5937 T20753 T20749 punct ;,Pygo1
R5938 T20754 T20749 appos Pygo2,Pygo1
R5939 T20755 T20754 punct +,Pygo2
R5940 T20756 T20754 punct /,Pygo2
R5941 T20757 T20754 punct +,Pygo2
R5942 T20758 T20759 punct (,6
R5943 T20759 T20749 parataxis 6,Pygo1
R5944 T20760 T20759 nsubj n,6
R5945 T20761 T20759 punct =,6
R5946 T20762 T20759 punct ),6
R5947 T20763 T20749 punct ", ",Pygo1
R5948 T20764 T20749 conj Pygo1,Pygo1
R5949 T20765 T20764 punct -,Pygo1
R5950 T20766 T20764 punct /,Pygo1
R5951 T20767 T20764 punct -,Pygo1
R5952 T20768 T20764 punct ;,Pygo1
R5953 T20769 T20764 appos Pygo2,Pygo1
R5954 T20770 T20769 punct +,Pygo2
R5955 T20771 T20769 punct /,Pygo2
R5956 T20772 T20769 punct -,Pygo2
R5957 T20773 T20774 punct (,8
R5958 T20774 T20764 parataxis 8,Pygo1
R5959 T20775 T20774 nsubj n,8
R5960 T20776 T20774 punct =,8
R5961 T20777 T20774 punct ),8
R5962 T20778 T20764 punct ", ",Pygo1
R5963 T20779 T20764 cc and,Pygo1
R5964 T20780 T20764 conj Pygo1,Pygo1
R5965 T20781 T20780 punct -,Pygo1
R5966 T20782 T20780 punct /,Pygo1
R5967 T20783 T20780 punct -,Pygo1
R5968 T20784 T20780 punct ;,Pygo1
R5969 T20785 T20780 appos Pygo2,Pygo1
R5970 T20786 T20785 punct -,Pygo2
R5971 T20787 T20785 punct /,Pygo2
R5972 T20788 T20785 punct -,Pygo2
R5973 T20789 T20790 punct (,6
R5974 T20790 T20780 parataxis 6,Pygo1
R5975 T20791 T20790 nsubj n,6
R5976 T20792 T20790 punct =,6
R5977 T20793 T20790 punct ),6
R5978 T20794 T20731 punct .,represented

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20632 585-586 SO_EXT:sequence_nullness_or_absence denotes -
T20631 583-584 SO_EXT:sequence_nullness_or_absence denotes -
T20630 578-583 PR_EXT:000013524 denotes Pygo2
T20629 574-575 SO_EXT:sequence_nullness_or_absence denotes -
T20628 572-573 SO_EXT:sequence_nullness_or_absence denotes -
T20627 567-572 PR_EXT:000013523 denotes Pygo1
T20626 552-553 SO_EXT:sequence_nullness_or_absence denotes -
T20625 550-551 SO_EXT:normal_or_wild_type_or_present denotes +
T20624 545-550 PR_EXT:000013524 denotes Pygo2
T20623 541-542 SO_EXT:sequence_nullness_or_absence denotes -
T20622 539-540 SO_EXT:sequence_nullness_or_absence denotes -
T20621 534-539 PR_EXT:000013523 denotes Pygo1
T20620 523-524 SO_EXT:normal_or_wild_type_or_present denotes +
T20619 521-522 SO_EXT:normal_or_wild_type_or_present denotes +
T20618 516-521 PR_EXT:000013524 denotes Pygo2
T20617 512-513 SO_EXT:sequence_nullness_or_absence denotes -
T20616 510-511 SO_EXT:normal_or_wild_type_or_present denotes +
T20615 505-510 PR_EXT:000013523 denotes Pygo1
T20614 485-495 SO_EXT:transgenic_entity denotes transgenic
T20613 423-431 SO_EXT:genotype_or_entity_with_genotype denotes genotype
T20612 409-416 CHEBI_PR_EXT:protein denotes protein
T20611 320-326 CHEBI_GO_SO_EXT:enzyme denotes Enzyme
T20610 307-312 GO_EXT:0004565 denotes β-Gal
T20609 271-281 GO:0010467 denotes expression
T20608 265-270 GO_EXT:0004565 denotes β-Gal
T20607 255-264 SO_EXT:0000902 denotes transgene
T20606 227-235 CHEBI:75958 denotes solution
T20605 212-217 CHEBI:75055 denotes X-gal
T20604 181-187 UBERON:0002113 denotes kidney
T20603 134-149 GO_EXT:0004565 denotes β-galactosidase
T20602 46-53 UBERON:0002113 denotes kidneys
T20601 23-30 UBERON:0000922 denotes embryos
T20600 0-5 CHEBI:75055 denotes X-gal

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T20592 516-521 PR:000013524 denotes Pygo2
T20591 505-510 PR:000013523 denotes Pygo1
T20589 255-264 SO:0000902 denotes transgene
T20588 227-235 CHEBI:75958 denotes solution
T20587 212-217 CHEBI:75055 denotes X-gal
T20586 181-187 UBERON:0002113 denotes kidney
T20585 46-53 UBERON:0002113 denotes kidneys
T20584 23-30 UBERON:0000922 denotes embryos
T20583 0-5 CHEBI:75055 denotes X-gal
T20596 578-583 PR:000013524 denotes Pygo2
T20595 567-572 PR:000013523 denotes Pygo1
T20594 545-550 PR:000013524 denotes Pygo2
T20593 534-539 PR:000013523 denotes Pygo1
T20590 271-281 GO:0010467 denotes expression

2_test

Id Subject Object Predicate Lexical cue
17425782-12626757-8469490 93-95 12626757 denotes 21