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T19328","obj":"T19329"},{"id":"R5532","pred":"nummod","subj":"T19329","obj":"T19331"},{"id":"R5533","pred":"advmod","subj":"T19330","obj":"T19329"},{"id":"R5534","pred":"pobj","subj":"T19331","obj":"T19327"},{"id":"R5535","pred":"punct","subj":"T19332","obj":"T19315"},{"id":"R5536","pred":"det","subj":"T19334","obj":"T19335"},{"id":"R5537","pred":"nsubj","subj":"T19335","obj":"T19336"},{"id":"R5538","pred":"prep","subj":"T19337","obj":"T19336"},{"id":"R5539","pred":"det","subj":"T19338","obj":"T19339"},{"id":"R5540","pred":"pobj","subj":"T19339","obj":"T19337"},{"id":"R5541","pred":"prep","subj":"T19340","obj":"T19339"},{"id":"R5542","pred":"det","subj":"T19341","obj":"T19342"},{"id":"R5543","pred":"pobj","subj":"T19342","obj":"T19340"},{"id":"R5544","pred":"cc","subj":"T19343","obj":"T19336"},{"id":"R5545","pred":"conj","subj":"T19344","obj":"T19336"},{"id":"R5546","pred":"prep","subj":"T19345","obj":"T19344"},{"id":"R5547","pred":"det","subj":"T19346","obj":"T19347"},{"id":"R5548","pred":"pobj","subj":"T19347","obj":"T19345"},{"id":"R5549","pred":"amod","subj":"T19348","obj":"T19347"},{"id":"R5550","pred":"prep","subj":"T19349","obj":"T19348"},{"id":"R5551","pred":"pobj","subj":"T19350","obj":"T19349"},{"id":"R5552","pred":"punct","subj":"T19351","obj":"T19336"},{"id":"R5553","pred":"nummod","subj":"T19353","obj":"T19354"},{"id":"R5554","pred":"nsubjpass","subj":"T19354","obj":"T19358"},{"id":"R5555","pred":"compound","subj":"T19355","obj":"T19356"},{"id":"R5556","pred":"compound","subj":"T19356","obj":"T19354"},{"id":"R5557","pred":"punct","subj":"T19357","obj":"T19356"},{"id":"R5558","pred":"auxpass","subj":"T19359","obj":"T19358"},{"id":"R5559","pred":"punct","subj":"T19360","obj":"T19358"},{"id":"R5560","pred":"dobj","subj":"T19361","obj":"T19358"},{"id":"R5561","pred":"prep","subj":"T19362","obj":"T19361"},{"id":"R5562","pred":"pobj","subj":"T19363","obj":"T19362"},{"id":"R5563","pred":"prep","subj":"T19364","obj":"T19363"},{"id":"R5564","pred":"det","subj":"T19365","obj":"T19366"},{"id":"R5565","pred":"pobj","subj":"T19366","obj":"T19364"},{"id":"R5566","pred":"nummod","subj":"T19367","obj":"T19366"},{"id":"R5567","pred":"prep","subj":"T19368","obj":"T19366"},{"id":"R5568","pred":"det","subj":"T19369","obj":"T19370"},{"id":"R5569","pred":"pobj","subj":"T19370","obj":"T19368"},{"id":"R5570","pred":"punct","subj":"T19371","obj":"T19358"},{"id":"R5571","pred":"amod","subj":"T19373","obj":"T19374"},{"id":"R5572","pred":"compound","subj":"T19374","obj":"T19375"},{"id":"R5573","pred":"nsubjpass","subj":"T19375","obj":"T19376"},{"id":"R5574","pred":"acl","subj":"T19377","obj":"T19375"},{"id":"R5575","pred":"prep","subj":"T19378","obj":"T19377"},{"id":"R5576","pred":"compound","subj":"T19379","obj":"T19380"},{"id":"R5577","pred":"pobj","subj":"T19380","obj":"T19378"},{"id":"R5578","pred":"auxpass","subj":"T19381","obj":"T19376"},{"id":"R5579","pred":"prep","subj":"T19382","obj":"T19376"},{"id":"R5580","pred":"det","subj":"T19383","obj":"T19384"},{"id":"R5581","pred":"pobj","subj":"T19384","obj":"T19382"},{"id":"R5582","pred":"amod","subj":"T19385","obj":"T19384"},{"id":"R5583","pred":"prep","subj":"T19386","obj":"T19384"},{"id":"R5584","pred":"det","subj":"T19387","obj":"T19388"},{"id":"R5585","pred":"pobj","subj":"T19388","obj":"T19386"},{"id":"R5586","pred":"amod","subj":"T19389","obj":"T19388"},{"id":"R5587","pred":"punct","subj":"T19390","obj":"T19376"}],"text":"Confocal microscopy\nKidneys were dissected, fixed in paraformaldehyde, treated with methanol, and washed with PBS containing Tween-20 (PBS-T) prior to treatment with lectins and antibodies. PBS-T was used for incubations of the tissues with fluoroscein-conjugated Dilichos biflorus aggutinin (DBA, Vector; Burlingame, USA), and PBS-T plus 2% goat serum was used for incubations with the antibodies. The primary antibodies were anti-WT1 (c-19; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-uvomorulin (e-cadherin, Cdh1, Sigma-Aldrich St. Louis, MO, USA), and anti-Cited1 (Neomarkers-Lab Vision Corporation, Fremont, CA, USA). The secondary antibodies were Alexa 555-conjugated anti-rabbit and Alexa 633-conjugated anti-rat antibodies (Molecular Probes, Eugene, OR, USA).\nThe tissues were imaged with a laser scanning microscope (Carl Zeiss, Thornwood, New York, USA) equipped with an argon (488 nm) and two HeNe lasers (543 nm and 633 nm). Optical sections approximately 2 μm thick were obtained every 5 μm to a depth of at least 65 μm. The sections began at the surface of the kidney and were on a plane tangential to it. Two Z-stack series were obtained, one from each of the two kidneys of each embryo. Ureteric bud tips identified by section tracing were counted within a defined area of the confocal image."}
craft-ca-core-ex-dev
{"project":"craft-ca-core-ex-dev","denotations":[{"id":"T19093","span":{"begin":709,"end":719},"obj":"MOP:0000779"},{"id":"T19092","span":{"begin":688,"end":694},"obj":"NCBITaxon:9986"},{"id":"T19091","span":{"begin":672,"end":682},"obj":"MOP:0000779"},{"id":"T19090","span":{"begin":662,"end":671},"obj":"CHEBI:52673"},{"id":"T19089","span":{"begin":646,"end":656},"obj":"GO:0042571"},{"id":"T19088","span":{"begin":570,"end":576},"obj":"PR_EXT:000005505"},{"id":"T19087","span":{"begin":520,"end":524},"obj":"PR_EXT:000001447"},{"id":"T19086","span":{"begin":508,"end":518},"obj":"PR_EXT:000001447"},{"id":"T19085","span":{"begin":496,"end":506},"obj":"PR_EXT:000001447"},{"id":"T19084","span":{"begin":432,"end":435},"obj":"PR_EXT:000017459"},{"id":"T19083","span":{"begin":411,"end":421},"obj":"GO:0042571"},{"id":"T19082","span":{"begin":387,"end":397},"obj":"GO:0042571"},{"id":"T19081","span":{"begin":347,"end":352},"obj":"UBERON:0001977"},{"id":"T19080","span":{"begin":342,"end":346},"obj":"NCBITaxon:9925"},{"id":"T19079","span":{"begin":264,"end":281},"obj":"NCBITaxon:271171"},{"id":"T19078","span":{"begin":253,"end":263},"obj":"MOP:0000779"},{"id":"T19077","span":{"begin":241,"end":252},"obj":"CHEBI:31624"},{"id":"T19076","span":{"begin":228,"end":235},"obj":"UBERON:0000479"},{"id":"T19075","span":{"begin":194,"end":195},"obj":"CHEBI:53424"},{"id":"T19074","span":{"begin":178,"end":188},"obj":"GO:0042571"},{"id":"T19073","span":{"begin":139,"end":140},"obj":"CHEBI:53424"},{"id":"T19072","span":{"begin":125,"end":133},"obj":"CHEBI:53424"},{"id":"T19071","span":{"begin":84,"end":92},"obj":"CHEBI:17790"},{"id":"T19070","span":{"begin":53,"end":69},"obj":"CHEBI_EXT:paraformaldehye"},{"id":"T19069","span":{"begin":20,"end":27},"obj":"UBERON:0002113"},{"id":"T19103","span":{"begin":1212,"end":1229},"obj":"UBERON:0006364"},{"id":"T19102","span":{"begin":1204,"end":1210},"obj":"UBERON:0000922"},{"id":"T19101","span":{"begin":1188,"end":1195},"obj":"UBERON:0002113"},{"id":"T19100","span":{"begin":1084,"end":1090},"obj":"UBERON:0002113"},{"id":"T19099","span":{"begin":890,"end":895},"obj":"CHEBI_EXT:argon"},{"id":"T19098","span":{"begin":781,"end":788},"obj":"UBERON:0000479"},{"id":"T19097","span":{"begin":751,"end":757},"obj":"CHEBI_SO_EXT:molecular_probe"},{"id":"T19096","span":{"begin":741,"end":750},"obj":"CHEBI_EXT:polyatomic_entity_or_group"},{"id":"T19095","span":{"begin":729,"end":739},"obj":"GO:0042571"},{"id":"T19094","span":{"begin":725,"end":728},"obj":"NCBITaxon:10114"}],"text":"Confocal microscopy\nKidneys were dissected, fixed in paraformaldehyde, treated with methanol, and washed with PBS containing Tween-20 (PBS-T) prior to treatment with lectins and antibodies. PBS-T was used for incubations of the tissues with fluoroscein-conjugated Dilichos biflorus aggutinin (DBA, Vector; Burlingame, USA), and PBS-T plus 2% goat serum was used for incubations with the antibodies. The primary antibodies were anti-WT1 (c-19; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-uvomorulin (e-cadherin, Cdh1, Sigma-Aldrich St. Louis, MO, USA), and anti-Cited1 (Neomarkers-Lab Vision Corporation, Fremont, CA, USA). The secondary antibodies were Alexa 555-conjugated anti-rabbit and Alexa 633-conjugated anti-rat antibodies (Molecular Probes, Eugene, OR, USA).\nThe tissues were imaged with a laser scanning microscope (Carl Zeiss, Thornwood, New York, USA) equipped with an argon (488 nm) and two HeNe lasers (543 nm and 633 nm). Optical sections approximately 2 μm thick were obtained every 5 μm to a depth of at least 65 μm. The sections began at the surface of the kidney and were on a plane tangential to it. Two Z-stack series were obtained, one from each of the two kidneys of each embryo. Ureteric bud tips identified by section tracing were counted within a defined area of the confocal image."}
craft-ca-core-dev
{"project":"craft-ca-core-dev","denotations":[{"id":"T19068","span":{"begin":1212,"end":1229},"obj":"UBERON:0006364"},{"id":"T19067","span":{"begin":1204,"end":1210},"obj":"UBERON:0000922"},{"id":"T19066","span":{"begin":1188,"end":1195},"obj":"UBERON:0002113"},{"id":"T19065","span":{"begin":1084,"end":1090},"obj":"UBERON:0002113"},{"id":"T19064","span":{"begin":781,"end":788},"obj":"UBERON:0000479"},{"id":"T19063","span":{"begin":729,"end":739},"obj":"GO:0042571"},{"id":"T19062","span":{"begin":725,"end":728},"obj":"NCBITaxon:10114"},{"id":"T19061","span":{"begin":709,"end":719},"obj":"MOP:0000779"},{"id":"T19060","span":{"begin":688,"end":694},"obj":"NCBITaxon:9986"},{"id":"T19059","span":{"begin":672,"end":682},"obj":"MOP:0000779"},{"id":"T19058","span":{"begin":662,"end":671},"obj":"CHEBI:52673"},{"id":"T19057","span":{"begin":646,"end":656},"obj":"GO:0042571"},{"id":"T19056","span":{"begin":570,"end":576},"obj":"PR:000005505"},{"id":"T19055","span":{"begin":520,"end":524},"obj":"PR:000001447"},{"id":"T19054","span":{"begin":508,"end":518},"obj":"PR:000001447"},{"id":"T19053","span":{"begin":496,"end":506},"obj":"PR:000001447"},{"id":"T19052","span":{"begin":432,"end":435},"obj":"PR:000017459"},{"id":"T19051","span":{"begin":411,"end":421},"obj":"GO:0042571"},{"id":"T19050","span":{"begin":387,"end":397},"obj":"GO:0042571"},{"id":"T19049","span":{"begin":347,"end":352},"obj":"UBERON:0001977"},{"id":"T19048","span":{"begin":342,"end":346},"obj":"NCBITaxon:9925"},{"id":"T19047","span":{"begin":264,"end":281},"obj":"NCBITaxon:271171"},{"id":"T19046","span":{"begin":253,"end":263},"obj":"MOP:0000779"},{"id":"T19045","span":{"begin":241,"end":252},"obj":"CHEBI:31624"},{"id":"T19044","span":{"begin":228,"end":235},"obj":"UBERON:0000479"},{"id":"T19043","span":{"begin":194,"end":195},"obj":"CHEBI:53424"},{"id":"T19042","span":{"begin":178,"end":188},"obj":"GO:0042571"},{"id":"T19041","span":{"begin":139,"end":140},"obj":"CHEBI:53424"},{"id":"T19040","span":{"begin":125,"end":133},"obj":"CHEBI:53424"},{"id":"T19039","span":{"begin":84,"end":92},"obj":"CHEBI:17790"},{"id":"T19038","span":{"begin":20,"end":27},"obj":"UBERON:0002113"}],"text":"Confocal microscopy\nKidneys were dissected, fixed in paraformaldehyde, treated with methanol, and washed with PBS containing Tween-20 (PBS-T) prior to treatment with lectins and antibodies. PBS-T was used for incubations of the tissues with fluoroscein-conjugated Dilichos biflorus aggutinin (DBA, Vector; Burlingame, USA), and PBS-T plus 2% goat serum was used for incubations with the antibodies. The primary antibodies were anti-WT1 (c-19; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-uvomorulin (e-cadherin, Cdh1, Sigma-Aldrich St. Louis, MO, USA), and anti-Cited1 (Neomarkers-Lab Vision Corporation, Fremont, CA, USA). The secondary antibodies were Alexa 555-conjugated anti-rabbit and Alexa 633-conjugated anti-rat antibodies (Molecular Probes, Eugene, OR, USA).\nThe tissues were imaged with a laser scanning microscope (Carl Zeiss, Thornwood, New York, USA) equipped with an argon (488 nm) and two HeNe lasers (543 nm and 633 nm). Optical sections approximately 2 μm thick were obtained every 5 μm to a depth of at least 65 μm. The sections began at the surface of the kidney and were on a plane tangential to it. Two Z-stack series were obtained, one from each of the two kidneys of each embryo. Ureteric bud tips identified by section tracing were counted within a defined area of the confocal image."}