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PMC:1858683 / 26990-27785 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T12466 794-795 . denotes .
T12465 793-794 -RRB- denotes ]
T12464 791-793 CD denotes 28
T12463 790-791 -LRB- denotes [
T12462 766-775 NN denotes branching
T12461 776-789 NN denotes morphogenesis
T12460 757-765 JJ denotes ureteric
T12459 748-756 VB denotes regulate
T12458 745-747 TO denotes to
T12457 734-738 VBN denotes been
T12456 729-733 RB denotes also
T12455 725-728 VBZ denotes has
T12454 723-725 , denotes ,
T12453 710-718 JJ denotes ureteric
T12452 700-709 VBG denotes branching
T12451 719-723 NNS denotes tips
T12450 696-699 DT denotes the
T12449 693-695 IN denotes in
T12448 683-692 VBN denotes expressed
T12447 679-682 CC denotes and
T12446 677-679 , denotes ,
T12445 670-677 NNS denotes rhythms
T12444 660-669 JJ denotes circadian
T12443 657-659 IN denotes of
T12442 646-656 NN denotes regulation
T12441 642-645 DT denotes the
T12440 639-641 IN denotes in
T12439 630-638 VBN denotes involved
T12438 609-622 NN denotes transcription
T12437 623-629 NN denotes factor
T12436 607-608 DT denotes a
T12435 605-607 , denotes ,
T12434 739-744 VBN denotes shown
T12398 418-420 , denotes ,
T12397 399-400 HYPH denotes -
T12396 400-411 NN denotes angiotensin
T12395 394-399 NN denotes renin
T12394 412-418 NN denotes system
T12393 390-393 DT denotes the
T12392 378-380 , denotes ,
T12391 377-378 CD denotes 1
T12390 371-376 NN denotes Renin
T12389 357-370 NN denotes endopeptidase
T12388 353-356 DT denotes the
T12387 350-352 IN denotes of
T12386 342-349 NN denotes homolog
T12385 340-341 DT denotes a
T12384 338-340 , denotes ,
T12383 380-389 VBZ denotes activates
T12382 334-338 NN denotes Ren2
T12381 333-451 sentence denotes Ren2, a homolog of the endopeptidase Renin 1, activates the renin-angiotensin system, increasing blood pressure [26].
T12380 332-333 . denotes .
T12379 331-332 -RRB- denotes ]
T12378 329-331 CD denotes 25
T12377 328-329 -LRB- denotes [
T12376 319-327 NN denotes pressure
T12375 313-318 NN denotes blood
T12374 310-312 IN denotes of
T12373 299-309 NN denotes regulation
T12372 295-298 CC denotes and
T12371 293-295 , denotes ,
T12370 283-293 NN denotes remodeling
T12369 276-282 NN denotes tissue
T12368 274-276 , denotes ,
T12367 268-274 NN denotes cancer
T12366 265-267 IN denotes in
T12365 255-264 NNS denotes functions
T12364 247-254 JJ denotes diverse
T12363 242-246 VBP denotes have
T12361 229-333 sentence denotes Kallikreins have diverse functions in cancer, tissue remodeling, and regulation of blood pressure [25].
T12360 228-229 . denotes .
T12359 212-218 NN denotes serine
T12358 219-228 NNS denotes proteases
T12357 206-207 HYPH denotes -
T12356 207-211 JJ denotes like
T12355 199-206 NN denotes trypsin
T12354 196-198 IN denotes of
T12353 178-188 NN denotes kallikrein
T12352 189-195 NN denotes family
T12351 174-177 DT denotes the
T12350 171-173 IN denotes of
T12349 163-170 NNS denotes members
T12348 154-158 NN denotes Klk6
T12347 150-153 CC denotes and
T12346 159-162 VBP denotes are
T12345 145-149 NN denotes Klk5
T12344 144-229 sentence denotes Klk5 and Klk6 are members of the kallikrein family of trypsin-like serine proteases.
T12343 143-144 . denotes .
T12342 142-143 -RRB- denotes )
T12341 134-142 RB denotes 2.4-fold
T12340 133-134 -LRB- denotes (
T12339 124-132 NNP denotes Timeless
T12338 120-123 CC denotes and
T12337 118-120 , denotes ,
T12336 117-118 -RRB- denotes )
T12335 109-117 RB denotes 2.2-fold
T12334 108-109 -LRB- denotes (
T12333 103-107 NN denotes Ren2
T12332 101-103 , denotes ,
T12331 100-101 -RRB- denotes )
T12330 92-100 RB denotes 2.7-fold
T12329 91-92 -LRB- denotes (
T12328 86-90 NN denotes Klk6
T12327 84-86 , denotes ,
T12326 83-84 -RRB- denotes )
T12325 75-83 RB denotes 2.8-fold
T12324 74-75 -LRB- denotes (
T12323 69-73 NN denotes Klk5
T12322 48-52 JJ denotes null
T12321 41-42 HYPH denotes /
T12320 42-47 NN denotes Pygo2
T12319 36-41 NN denotes Pygo1
T12318 53-59 NN denotes kidney
T12317 32-35 DT denotes the
T12433 597-605 NN denotes Timeless
T12432 596-795 sentence denotes Timeless, a transcription factor involved in the regulation of circadian rhythms, and expressed in the branching ureteric tips, has also been shown to regulate ureteric branching morphogenesis [28].
T12431 595-596 . denotes .
T12430 594-595 -RRB- denotes ]
T12429 592-594 CD denotes 27
T12428 591-592 -LRB- denotes [
T12427 584-590 NN denotes system
T12426 578-579 HYPH denotes -
T12425 579-583 NN denotes duct
T12424 568-578 NN denotes collecting
T12423 564-567 CC denotes and
T12422 557-563 NN denotes ureter
T12421 553-556 DT denotes the
T12420 550-552 IN denotes of
T12419 536-549 NNS denotes abnormalities
T12418 525-535 JJ denotes congenital
T12417 522-524 IN denotes in
T12416 502-513 NN denotes development
T12415 495-501 IN denotes during
T12414 475-476 HYPH denotes -
T12413 476-487 NN denotes angiotensin
T12412 470-475 NN denotes renin
T12411 488-494 NN denotes system
T12410 466-469 DT denotes the
T12409 463-465 IN denotes of
T12408 514-521 VBZ denotes results
T12407 452-462 NN denotes Disruption
T12406 451-596 sentence denotes Disruption of the renin-angiotensin system during development results in congenital abnormalities of the ureter and collecting-duct system [27].
T12405 450-451 . denotes .
T12404 449-450 -RRB- denotes ]
T12403 447-449 CD denotes 26
T12402 446-447 -LRB- denotes [
T12401 437-445 NN denotes pressure
T12400 431-436 NN denotes blood
T12399 420-430 VBG denotes increasing
T12316 29-31 IN denotes in
T12315 17-28 VBN denotes upregulated
T12314 60-68 VBN denotes included
T12313 11-16 NNS denotes genes
T12312 0-10 JJ denotes Noteworthy
T12311 0-144 sentence denotes Noteworthy genes upregulated in the Pygo1/Pygo2 null kidney included Klk5 (2.8-fold), Klk6 (2.7-fold), Ren2 (2.2-fold), and Timeless (2.4-fold).
T12362 230-241 NNS denotes Kallikreins
R3269 T12312 T12313 amod Noteworthy,genes
R3270 T12313 T12314 nsubj genes,included
R3271 T12315 T12313 acl upregulated,genes
R3272 T12316 T12315 prep in,upregulated
R3273 T12317 T12318 det the,kidney
R3274 T12318 T12316 pobj kidney,in
R3275 T12319 T12320 compound Pygo1,Pygo2
R3276 T12320 T12322 npadvmod Pygo2,null
R3277 T12321 T12320 punct /,Pygo2
R3278 T12322 T12318 amod null,kidney
R3279 T12323 T12314 dobj Klk5,included
R3280 T12324 T12325 punct (,2.8-fold
R3281 T12325 T12323 parataxis 2.8-fold,Klk5
R3282 T12326 T12325 punct ),2.8-fold
R3283 T12327 T12323 punct ", ",Klk5
R3284 T12328 T12323 conj Klk6,Klk5
R3285 T12329 T12330 punct (,2.7-fold
R3286 T12330 T12328 parataxis 2.7-fold,Klk6
R3287 T12331 T12330 punct ),2.7-fold
R3288 T12332 T12328 punct ", ",Klk6
R3289 T12333 T12328 conj Ren2,Klk6
R3290 T12334 T12335 punct (,2.2-fold
R3291 T12335 T12333 parataxis 2.2-fold,Ren2
R3292 T12336 T12335 punct ),2.2-fold
R3293 T12337 T12333 punct ", ",Ren2
R3294 T12338 T12333 cc and,Ren2
R3295 T12339 T12333 conj Timeless,Ren2
R3296 T12340 T12341 punct (,2.4-fold
R3297 T12341 T12339 parataxis 2.4-fold,Timeless
R3298 T12342 T12341 punct ),2.4-fold
R3299 T12343 T12314 punct .,included
R3300 T12345 T12346 nsubj Klk5,are
R3301 T12347 T12345 cc and,Klk5
R3302 T12348 T12345 conj Klk6,Klk5
R3303 T12349 T12346 attr members,are
R3304 T12350 T12349 prep of,members
R3305 T12351 T12352 det the,family
R3306 T12352 T12350 pobj family,of
R3307 T12353 T12352 compound kallikrein,family
R3308 T12354 T12352 prep of,family
R3309 T12355 T12356 npadvmod trypsin,like
R3310 T12356 T12358 amod like,proteases
R3311 T12357 T12356 punct -,like
R3312 T12358 T12354 pobj proteases,of
R3313 T12359 T12358 compound serine,proteases
R3314 T12360 T12346 punct .,are
R3315 T12362 T12363 nsubj Kallikreins,have
R3316 T12364 T12365 amod diverse,functions
R3317 T12365 T12363 dobj functions,have
R3318 T12366 T12363 prep in,have
R3319 T12367 T12366 pobj cancer,in
R3320 T12368 T12367 punct ", ",cancer
R3321 T12369 T12370 compound tissue,remodeling
R3322 T12370 T12367 conj remodeling,cancer
R3323 T12371 T12370 punct ", ",remodeling
R3324 T12372 T12370 cc and,remodeling
R3325 T12373 T12370 conj regulation,remodeling
R3326 T12374 T12373 prep of,regulation
R3327 T12375 T12376 compound blood,pressure
R3328 T12376 T12374 pobj pressure,of
R3329 T12377 T12378 punct [,25
R3330 T12378 T12363 parataxis 25,have
R3331 T12379 T12378 punct ],25
R3332 T12380 T12363 punct .,have
R3333 T12382 T12383 nsubj Ren2,activates
R3334 T12384 T12382 punct ", ",Ren2
R3335 T12385 T12386 det a,homolog
R3336 T12386 T12382 appos homolog,Ren2
R3337 T12387 T12386 prep of,homolog
R3338 T12388 T12389 det the,endopeptidase
R3339 T12389 T12387 pobj endopeptidase,of
R3340 T12390 T12389 appos Renin,endopeptidase
R3341 T12391 T12390 nummod 1,Renin
R3342 T12392 T12383 punct ", ",activates
R3343 T12393 T12394 det the,system
R3344 T12394 T12383 dobj system,activates
R3345 T12395 T12396 compound renin,angiotensin
R3346 T12396 T12394 compound angiotensin,system
R3347 T12397 T12396 punct -,angiotensin
R3348 T12398 T12383 punct ", ",activates
R3349 T12399 T12383 advcl increasing,activates
R3350 T12400 T12401 compound blood,pressure
R3351 T12401 T12399 dobj pressure,increasing
R3352 T12402 T12403 punct [,26
R3353 T12403 T12383 parataxis 26,activates
R3354 T12404 T12403 punct ],26
R3355 T12405 T12383 punct .,activates
R3356 T12407 T12408 nsubj Disruption,results
R3357 T12409 T12407 prep of,Disruption
R3358 T12410 T12411 det the,system
R3359 T12411 T12409 pobj system,of
R3360 T12412 T12413 compound renin,angiotensin
R3361 T12413 T12411 compound angiotensin,system
R3362 T12414 T12413 punct -,angiotensin
R3363 T12415 T12407 prep during,Disruption
R3364 T12416 T12415 pobj development,during
R3365 T12417 T12408 prep in,results
R3366 T12418 T12419 amod congenital,abnormalities
R3367 T12419 T12417 pobj abnormalities,in
R3368 T12420 T12419 prep of,abnormalities
R3369 T12421 T12422 det the,ureter
R3370 T12422 T12420 pobj ureter,of
R3371 T12423 T12422 cc and,ureter
R3372 T12424 T12425 compound collecting,duct
R3373 T12425 T12427 compound duct,system
R3374 T12426 T12425 punct -,duct
R3375 T12427 T12422 conj system,ureter
R3376 T12428 T12429 punct [,27
R3377 T12429 T12408 parataxis 27,results
R3378 T12430 T12429 punct ],27
R3379 T12431 T12408 punct .,results
R3380 T12433 T12434 nsubjpass Timeless,shown
R3381 T12435 T12433 punct ", ",Timeless
R3382 T12436 T12437 det a,factor
R3383 T12437 T12433 appos factor,Timeless
R3384 T12438 T12437 compound transcription,factor
R3385 T12439 T12437 acl involved,factor
R3386 T12440 T12439 prep in,involved
R3387 T12441 T12442 det the,regulation
R3388 T12442 T12440 pobj regulation,in
R3389 T12443 T12442 prep of,regulation
R3390 T12444 T12445 amod circadian,rhythms
R3391 T12445 T12443 pobj rhythms,of
R3392 T12446 T12439 punct ", ",involved
R3393 T12447 T12439 cc and,involved
R3394 T12448 T12439 conj expressed,involved
R3395 T12449 T12448 prep in,expressed
R3396 T12450 T12451 det the,tips
R3397 T12451 T12449 pobj tips,in
R3398 T12452 T12451 amod branching,tips
R3399 T12453 T12451 amod ureteric,tips
R3400 T12454 T12434 punct ", ",shown
R3401 T12455 T12434 aux has,shown
R3402 T12456 T12434 advmod also,shown
R3403 T12457 T12434 auxpass been,shown
R3404 T12458 T12459 aux to,regulate
R3405 T12459 T12434 xcomp regulate,shown
R3406 T12460 T12461 amod ureteric,morphogenesis
R3407 T12461 T12459 dobj morphogenesis,regulate
R3408 T12462 T12461 compound branching,morphogenesis
R3409 T12463 T12464 punct [,28
R3410 T12464 T12434 parataxis 28,shown
R3411 T12465 T12464 punct ],28
R3412 T12466 T12434 punct .,shown

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11977 276-282 UBERON:0000479 denotes tissue
T11976 212-228 GO_EXT:0008236 denotes serine proteases
T11975 212-218 CHEBI_SO_EXT:serine denotes serine
T11974 199-206 PR_EXT:000027795 denotes trypsin
T11973 154-158 PR_EXT:000009416 denotes Klk6
T11972 145-149 PR_EXT:000009415 denotes Klk5
T11971 124-132 PR_EXT:000016340 denotes Timeless
T11970 103-107 PR_EXT:000014395 denotes Ren2
T11969 86-90 PR_EXT:000009416 denotes Klk6
T11968 69-73 PR_EXT:000009415 denotes Klk5
T11967 53-59 UBERON:0002113 denotes kidney
T11966 48-52 SO_EXT:sequence_nullness denotes null
T11965 42-47 PR_EXT:000013524 denotes Pygo2
T11964 36-41 PR_EXT:000013523 denotes Pygo1
T11963 17-28 GO_EXT:positive_regulation denotes upregulated
T11962 11-16 SO_EXT:0000704 denotes genes
T12000 766-789 GO:0001763 denotes branching morphogenesis
T11999 757-765 UBERON:0000056 denotes ureteric
T11998 748-756 GO:0065007 denotes regulate
T11997 710-723 UBERON:0006364 denotes ureteric tips
T11996 683-692 GO:0010467 denotes expressed
T11995 646-677 GO:0042752 denotes regulation of circadian rhythms
T11994 609-629 GO_EXT:transcription_factor denotes transcription factor
T11993 609-622 GO_EXT:transcription denotes transcription
T11992 597-605 PR_EXT:000016340 denotes Timeless
T11991 568-590 UBERON:0004100 denotes collecting-duct system
T11990 557-563 UBERON:0000056 denotes ureter
T11989 476-487 CHEBI_PR_EXT:angiotensin denotes angiotensin
T11988 470-475 PR_EXT:000013883 denotes renin
T11987 431-436 UBERON:0000178 denotes blood
T11986 400-411 CHEBI_PR_EXT:angiotensin denotes angiotensin
T11985 394-399 PR_EXT:000013883 denotes renin
T11984 371-378 PR_EXT:000014394 denotes Renin 1
T11983 357-370 GO_EXT:0004175 denotes endopeptidase
T11982 342-349 SO_EXT:0000853 denotes homolog
T11981 334-338 PR_EXT:000014395 denotes Ren2
T11980 313-318 UBERON:0000178 denotes blood
T11979 299-327 GO:0008217 denotes regulation of blood pressure
T11978 276-293 GO:0048771 denotes tissue remodeling

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11873 766-789 GO:0001763 denotes branching morphogenesis
T11872 757-765 UBERON:0000056 denotes ureteric
T11871 748-756 GO:0065007 denotes regulate
T11870 710-723 UBERON:0006364 denotes ureteric tips
T11869 683-692 GO:0010467 denotes expressed
T11868 646-677 GO:0042752 denotes regulation of circadian rhythms
T11867 597-605 PR:000016340 denotes Timeless
T11866 568-590 UBERON:0004100 denotes collecting-duct system
T11865 557-563 UBERON:0000056 denotes ureter
T11864 470-475 PR:000013883 denotes renin
T11863 431-436 UBERON:0000178 denotes blood
T11862 394-399 PR:000013883 denotes renin
T11861 371-378 PR:000014394 denotes Renin 1
T11860 342-349 SO:0000853 denotes homolog
T11859 334-338 PR:000014395 denotes Ren2
T11858 313-318 UBERON:0000178 denotes blood
T11857 299-327 GO:0008217 denotes regulation of blood pressure
T11856 276-293 GO:0048771 denotes tissue remodeling
T11855 276-282 UBERON:0000479 denotes tissue
T11854 199-206 PR:000027795 denotes trypsin
T11853 154-158 PR:000009416 denotes Klk6
T11852 145-149 PR:000009415 denotes Klk5
T11851 124-132 PR:000016340 denotes Timeless
T11850 103-107 PR:000014395 denotes Ren2
T11849 86-90 PR:000009416 denotes Klk6
T11848 69-73 PR:000009415 denotes Klk5
T11847 53-59 UBERON:0002113 denotes kidney
T11846 42-47 PR:000013524 denotes Pygo2
T11845 36-41 PR:000013523 denotes Pygo1
T11844 11-16 SO:0000704 denotes genes

2_test

Id Subject Object Predicate Lexical cue
17425782-15192120-8469466 329-331 15192120 denotes 25
17425782-12512695-8469467 447-449 12512695 denotes 26
17425782-16601496-8469468 592-594 16601496 denotes 27
17425782-10963667-8469469 791-793 10963667 denotes 28