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PMC:1858683 / 21706-22518 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T26928 72-73 HYPH denotes /
T26927 73-78 NN denotes Pygo2
T26926 67-72 NN denotes Pygo1
T26925 64-66 IN denotes in
T26924 53-63 NN denotes expression
T26923 44-52 NN denotes reporter
T26922 39-40 HYPH denotes -
T26921 40-43 NN denotes gal
T26920 36-39 NN denotes BAT
T26919 33-35 IN denotes of
T26918 24-32 NN denotes analysis
T26917 11-23 JJ denotes Quantitative
T27007 397-398 . denotes .
T27006 396-397 NN denotes %
T27005 394-396 CD denotes 50
T27004 388-393 IN denotes about
T27003 385-387 IN denotes by
T27002 373-376 VBD denotes was
T27001 362-372 NN denotes expression
T27000 353-361 NN denotes reporter
T26999 351-353 , denotes ,
T26998 344-351 RB denotes however
T26997 342-344 , denotes ,
T26996 324-334 JJ denotes homozygous
T26995 318-323 NN denotes Pygo1
T26994 316-318 , denotes ,
T26993 303-316 NN denotes hetereozygote
T26992 297-302 NN denotes Pygo2
T26991 335-342 NNS denotes mutants
T26990 293-296 DT denotes the
T26989 377-384 VBN denotes reduced
T26988 290-292 IN denotes In
T26987 289-398 sentence denotes In the Pygo2 hetereozygote, Pygo1 homozygous mutants, however, reporter expression was reduced by about 50%.
T26986 288-289 . denotes .
T26985 278-288 NN denotes expression
T26984 273-274 HYPH denotes -
T26983 274-277 NN denotes gal
T26982 270-273 NN denotes BAT
T26981 267-269 IN denotes of
T26980 260-266 NNS denotes levels
T26979 252-259 JJ denotes similar
T26978 241-244 RB denotes all
T26977 245-251 VBD denotes showed
T26976 231-232 SYM denotes +
T26975 230-231 HYPH denotes /
T26974 229-230 SYM denotes +
T26973 224-229 NN denotes Pygo2
T26972 223-224 HYPH denotes /
T26971 222-223 SYM denotes -
T26970 221-222 HYPH denotes /
T26969 220-221 SYM denotes +
T26968 215-220 NN denotes Pygo1
T26967 211-214 CC denotes and
T26966 209-210 SYM denotes -
T26965 208-209 HYPH denotes /
T26964 207-208 SYM denotes +
T26963 202-207 NN denotes Pygo2
T26962 201-202 HYPH denotes /
T26961 200-201 SYM denotes -
T26960 199-200 HYPH denotes /
T26959 198-199 SYM denotes +
T26958 193-198 NN denotes Pygo1
T26957 191-193 , denotes ,
T26956 190-191 SYM denotes +
T26955 189-190 HYPH denotes /
T26954 188-189 SYM denotes +
T26953 183-188 NN denotes Pygo2
T26952 182-183 HYPH denotes /
T26951 181-182 SYM denotes -
T26950 180-181 HYPH denotes /
T26949 179-180 SYM denotes +
T26948 233-240 NNS denotes kidneys
T26947 174-179 NN denotes Pygo1
T26946 173-289 sentence denotes Pygo1+/-/Pygo2+/+, Pygo1+/-/Pygo2+/- and Pygo1+/-/Pygo2+/+ kidneys all showed similar levels of BAT-gal expression.
T26945 172-173 . denotes .
T26944 164-172 NN denotes analysis
T26943 158-163 NNP denotes ELISA
T26942 155-157 IN denotes by
T26941 140-143 VBD denotes was
T26940 144-154 VBN denotes quantified
T26939 125-126 HYPH denotes -
T26938 121-125 NN denotes beta
T26937 126-139 NN denotes galactosidase
T26936 111-112 HYPH denotes -
T26935 112-120 JJ denotes specific
T26934 102-111 NN denotes Transgene
T26933 101-173 sentence denotes Transgene-specific beta-galactosidase was quantified by ELISA analysis.
T26932 100-101 . denotes .
T26931 85-91 NN denotes kidney
T26930 79-84 NN denotes E18.5
T26929 92-100 NNS denotes extracts
T10407 811-812 . denotes .
T10406 802-811 NNS denotes glomeruli
T10405 798-801 CC denotes and
T10404 796-798 , denotes ,
T10403 789-796 NNS denotes tubules
T10402 787-789 , denotes ,
T10401 781-787 NNS denotes bodies
T10400 773-774 HYPH denotes -
T10399 774-780 VBN denotes shaped
T10398 772-773 NN denotes S
T10397 770-772 , denotes ,
T10396 762-770 NNS denotes vesicles
T10395 756-761 JJ denotes renal
T10394 753-755 IN denotes as
T10393 748-752 JJ denotes such
T10392 746-748 , denotes ,
T10391 736-746 NNS denotes structures
T10390 727-728 HYPH denotes -
T10389 728-735 VBN denotes derived
T10388 717-727 NN denotes mesenchyme
T10387 705-716 JJ denotes metanephric
T10386 702-704 CC denotes or
T10385 700-702 , denotes ,
T10384 678-689 JJ denotes metanephric
T10383 667-677 VBG denotes developing
T10382 690-700 NN denotes mesenchyme
T10381 663-666 DT denotes the
T10380 660-662 IN denotes in
T10379 649-659 NN denotes expression
T10378 646-648 DT denotes no
T10377 625-626 HYPH denotes -
T10376 626-629 NN denotes gal
T10375 622-625 NN denotes BAT
T10374 630-638 NN denotes reporter
T10373 618-621 DT denotes the
T10372 613-617 NNS denotes mice
T10371 607-608 HYPH denotes -
T10370 608-612 NN denotes type
T10369 603-607 JJ denotes wild
T10368 600-602 IN denotes in
T10367 595-599 RB denotes even
T27042 569-570 . denotes .
T27041 559-564 RBS denotes least
T27040 565-569 CD denotes four
T27039 556-558 RB denotes at
T27038 553-555 IN denotes of
T27037 541-547 NN denotes sample
T27036 548-552 NN denotes size
T27035 539-540 DT denotes a
T27034 530-538 VBD denotes included
T27033 511-523 JJ denotes experimental
T27032 524-529 NN denotes group
T27031 506-510 DT denotes Each
T27030 505-570 sentence denotes Each experimental group included a sample size of at least four.
T27029 504-505 . denotes .
T27028 491-496 NN denotes Pygo1
T27027 497-504 NNS denotes alleles
T27026 485-486 HYPH denotes -
T27025 486-490 NN denotes type
T27024 481-485 JJ denotes wild
T27023 473-480 IN denotes without
T27022 470-472 CC denotes or
T27021 465-469 IN denotes with
T27020 463-465 , denotes ,
T27019 460-463 JJ denotes low
T27018 450-459 RB denotes uniformly
T27017 435-445 NN denotes expression
T27016 430-431 HYPH denotes -
T27015 431-434 NN denotes gal
T27014 427-430 NN denotes BAT
T27013 419-426 NNS denotes mutants
T27012 408-418 JJ denotes homozygous
T27011 402-407 NN denotes Pygo2
T27010 446-449 VBD denotes was
T27009 399-401 IN denotes In
T27008 398-505 sentence denotes In Pygo2 homozygous mutants BAT-gal expression was uniformly low, with or without wild-type Pygo1 alleles.
T10366 593-595 , denotes ,
T10365 586-593 RB denotes however
T10364 584-586 , denotes ,
T10363 639-645 VBD denotes showed
T10362 571-584 RB denotes Interestingly
T10361 0-812 sentence denotes Figure 7 Quantitative analysis of BAT-gal reporter expression in Pygo1/Pygo2 E18.5 kidney extracts. Transgene-specific beta-galactosidase was quantified by ELISA analysis. Pygo1+/-/Pygo2+/+, Pygo1+/-/Pygo2+/- and Pygo1+/-/Pygo2+/+ kidneys all showed similar levels of BAT-gal expression. In the Pygo2 hetereozygote, Pygo1 homozygous mutants, however, reporter expression was reduced by about 50%. In Pygo2 homozygous mutants BAT-gal expression was uniformly low, with or without wild-type Pygo1 alleles. Each experimental group included a sample size of at least four. Interestingly, however, even in wild-type mice the BAT-gal reporter showed no expression in the developing metanephric mesenchyme, or metanephric mesenchyme-derived structures, such as renal vesicles, S-shaped bodies, tubules, and glomeruli.
R2826 T10403 T10401 conj tubules,bodies
R2827 T10404 T10403 punct ", ",tubules
R2828 T10405 T10403 cc and,tubules
R2829 T10406 T10403 conj glomeruli,tubules
R2831 T10407 T10363 punct .,showed
R7770 T26917 T26918 amod Quantitative,analysis
R7771 T26919 T26918 prep of,analysis
R7772 T26920 T26921 compound BAT,gal
R7773 T26921 T26923 compound gal,reporter
R7774 T26922 T26921 punct -,gal
R7775 T26923 T26924 compound reporter,expression
R7776 T26924 T26919 pobj expression,of
R7777 T26925 T26924 prep in,expression
R7778 T26926 T26927 compound Pygo1,Pygo2
R7779 T26927 T26929 compound Pygo2,extracts
R7780 T26928 T26927 punct /,Pygo2
R7781 T26929 T26925 pobj extracts,in
R7782 T26930 T26929 compound E18.5,extracts
R7783 T26931 T26929 compound kidney,extracts
R7784 T26932 T26918 punct .,analysis
R7785 T26934 T26935 npadvmod Transgene,specific
R7786 T26935 T26937 amod specific,galactosidase
R7787 T26936 T26935 punct -,specific
R7788 T26937 T26940 nsubjpass galactosidase,quantified
R7789 T26938 T26937 compound beta,galactosidase
R7790 T26939 T26937 punct -,galactosidase
R7791 T26941 T26940 auxpass was,quantified
R7792 T26942 T26940 prep by,quantified
R7793 T26943 T26944 compound ELISA,analysis
R7794 T26944 T26942 pobj analysis,by
R7795 T26945 T26940 punct .,quantified
R7796 T26947 T26948 nmod Pygo1,kidneys
R7797 T26948 T26977 nsubj kidneys,showed
R7798 T26949 T26947 punct +,Pygo1
R7799 T26950 T26947 punct /,Pygo1
R7800 T26951 T26947 punct -,Pygo1
R7801 T26952 T26947 punct /,Pygo1
R7802 T26953 T26947 appos Pygo2,Pygo1
R7803 T26954 T26953 punct +,Pygo2
R7804 T26955 T26953 punct /,Pygo2
R7805 T26956 T26953 punct +,Pygo2
R7806 T26957 T26947 punct ", ",Pygo1
R7807 T26958 T26947 conj Pygo1,Pygo1
R7808 T26959 T26958 punct +,Pygo1
R7809 T26960 T26958 punct /,Pygo1
R7810 T26961 T26958 punct -,Pygo1
R7811 T26962 T26958 punct /,Pygo1
R7812 T26963 T26958 appos Pygo2,Pygo1
R7813 T26964 T26963 punct +,Pygo2
R7814 T26965 T26963 punct /,Pygo2
R7815 T26966 T26963 punct -,Pygo2
R7816 T26967 T26958 cc and,Pygo1
R7817 T26968 T26958 conj Pygo1,Pygo1
R7818 T26969 T26968 punct +,Pygo1
R7819 T26970 T26968 punct /,Pygo1
R7820 T26971 T26968 punct -,Pygo1
R7821 T26972 T26968 punct /,Pygo1
R7822 T26973 T26968 appos Pygo2,Pygo1
R7823 T26974 T26973 punct +,Pygo2
R7824 T26975 T26973 punct /,Pygo2
R7825 T26976 T26973 punct +,Pygo2
R7826 T26978 T26948 appos all,kidneys
R7827 T26979 T26980 amod similar,levels
R7828 T26980 T26977 dobj levels,showed
R7829 T26981 T26980 prep of,levels
R7830 T26982 T26983 compound BAT,gal
R7831 T26983 T26985 compound gal,expression
R7832 T26984 T26983 punct -,gal
R7833 T26985 T26981 pobj expression,of
R7834 T26986 T26977 punct .,showed
R7835 T26988 T26989 prep In,reduced
R7836 T26990 T26991 det the,mutants
R7837 T26991 T26988 pobj mutants,In
R7838 T26992 T26993 nmod Pygo2,hetereozygote
R7839 T26993 T26991 nmod hetereozygote,mutants
R7840 T26994 T26991 punct ", ",mutants
R7841 T26995 T26996 npadvmod Pygo1,homozygous
R7842 T26996 T26991 amod homozygous,mutants
R7843 T26997 T26989 punct ", ",reduced
R7844 T26998 T26989 advmod however,reduced
R7845 T26999 T26989 punct ", ",reduced
R7846 T27000 T27001 compound reporter,expression
R7847 T27001 T26989 nsubjpass expression,reduced
R7848 T27002 T26989 auxpass was,reduced
R7849 T27003 T26989 prep by,reduced
R7850 T27004 T27005 quantmod about,50
R7851 T27005 T27006 nummod 50,%
R7852 T27006 T27003 pobj %,by
R7853 T27007 T26989 punct .,reduced
R7854 T27009 T27010 prep In,was
R7855 T27011 T27012 npadvmod Pygo2,homozygous
R7856 T27012 T27013 amod homozygous,mutants
R7857 T27013 T27009 pobj mutants,In
R7858 T27014 T27015 compound BAT,gal
R7859 T27015 T27017 compound gal,expression
R7860 T27016 T27015 punct -,gal
R7861 T27017 T27010 nsubj expression,was
R7862 T27018 T27019 advmod uniformly,low
R7863 T27019 T27010 acomp low,was
R7864 T27020 T27010 punct ", ",was
R7865 T27021 T27010 prep with,was
R7866 T27022 T27021 cc or,with
R7867 T27023 T27021 conj without,with
R7868 T27024 T27025 amod wild,type
R7869 T27025 T27027 compound type,alleles
R7870 T27026 T27025 punct -,type
R7871 T27027 T27023 pobj alleles,without
R7872 T27028 T27027 compound Pygo1,alleles
R7873 T27029 T27010 punct .,was
R7874 T27031 T27032 det Each,group
R7875 T27032 T27034 nsubj group,included
R7876 T27033 T27032 amod experimental,group
R7877 T27035 T27036 det a,size
R7878 T27036 T27034 dobj size,included
R7879 T27037 T27036 compound sample,size
R7880 T27038 T27036 prep of,size
R7881 T27039 T27040 advmod at,four
R7882 T27040 T27038 pobj four,of
R7883 T27041 T27040 advmod least,four
R7884 T27042 T27034 punct .,included
R2772 T10362 T10363 advmod Interestingly,showed
R2774 T10364 T10363 punct ", ",showed
R2776 T10365 T10363 advmod however,showed
R2777 T10366 T10363 punct ", ",showed
R2779 T10367 T10368 advmod even,in
R2780 T10368 T10363 prep in,showed
R2781 T10369 T10370 amod wild,type
R2783 T10370 T10372 compound type,mice
R2784 T10371 T10370 punct -,type
R2785 T10372 T10368 pobj mice,in
R2786 T10373 T10374 det the,reporter
R2787 T10374 T10363 nsubj reporter,showed
R2789 T10375 T10376 compound BAT,gal
R2790 T10376 T10374 compound gal,reporter
R2791 T10377 T10376 punct -,gal
R2792 T10378 T10379 det no,expression
R2794 T10379 T10363 dobj expression,showed
R2795 T10380 T10379 prep in,expression
R2797 T10381 T10382 det the,mesenchyme
R2798 T10382 T10380 pobj mesenchyme,in
R2799 T10383 T10382 amod developing,mesenchyme
R2801 T10384 T10382 amod metanephric,mesenchyme
R2802 T10385 T10382 punct ", ",mesenchyme
R2803 T10386 T10382 cc or,mesenchyme
R2805 T10387 T10388 amod metanephric,mesenchyme
R2806 T10388 T10389 npadvmod mesenchyme,derived
R2807 T10389 T10391 amod derived,structures
R2809 T10390 T10389 punct -,derived
R2810 T10391 T10382 conj structures,mesenchyme
R2812 T10392 T10391 punct ", ",structures
R2813 T10393 T10394 amod such,as
R2814 T10394 T10391 prep as,structures
R2815 T10395 T10396 amod renal,vesicles
R2817 T10396 T10394 pobj vesicles,as
R2818 T10397 T10396 punct ", ",vesicles
R2820 T10398 T10399 npadvmod S,shaped
R2821 T10399 T10401 amod shaped,bodies
R2822 T10400 T10399 punct -,shaped
R2823 T10401 T10396 conj bodies,vesicles
R2824 T10402 T10401 punct ", ",bodies

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26916 497-504 SO_EXT:0001023 denotes alleles
T26915 491-496 PR_EXT:000013523 denotes Pygo1
T26914 481-490 SO_EXT:wild_type_entity_or_quality denotes wild-type
T26913 435-445 GO:0010467 denotes expression
T26912 431-434 GO_EXT:0015925 denotes gal
T26911 419-426 SO_EXT:sequence_altered_entity denotes mutants
T26910 402-407 PR_EXT:000013524 denotes Pygo2
T26909 362-372 GO:0010467 denotes expression
T26908 335-342 SO_EXT:sequence_altered_entity denotes mutants
T26907 318-323 PR_EXT:000013523 denotes Pygo1
T26906 297-302 PR_EXT:000013524 denotes Pygo2
T26905 278-288 GO:0010467 denotes expression
T26904 274-277 GO_EXT:0015925 denotes gal
T26903 233-240 UBERON:0002113 denotes kidneys
T26902 231-232 SO_EXT:normal_or_wild_type_or_present denotes +
T26901 229-230 SO_EXT:normal_or_wild_type_or_present denotes +
T26900 224-229 PR_EXT:000013524 denotes Pygo2
T26899 222-223 SO_EXT:sequence_nullness_or_absence denotes -
T26898 220-221 SO_EXT:normal_or_wild_type_or_present denotes +
T26897 215-220 PR_EXT:000013523 denotes Pygo1
T26896 209-210 SO_EXT:sequence_nullness_or_absence denotes -
T26895 207-208 SO_EXT:normal_or_wild_type_or_present denotes +
T26894 202-207 PR_EXT:000013524 denotes Pygo2
T26893 200-201 SO_EXT:sequence_nullness_or_absence denotes -
T26892 198-199 SO_EXT:normal_or_wild_type_or_present denotes +
T26891 193-198 PR_EXT:000013523 denotes Pygo1
T26890 190-191 SO_EXT:normal_or_wild_type_or_present denotes +
T26889 188-189 SO_EXT:normal_or_wild_type_or_present denotes +
T26888 183-188 PR_EXT:000013524 denotes Pygo2
T26887 181-182 SO_EXT:sequence_nullness_or_absence denotes -
T26886 179-180 SO_EXT:normal_or_wild_type_or_present denotes +
T26885 174-179 PR_EXT:000013523 denotes Pygo1
T26884 121-139 GO_EXT:0004565 denotes beta-galactosidase
T26883 102-111 SO_EXT:0000902 denotes Transgene
T26882 85-91 UBERON:0002113 denotes kidney
T26881 73-78 PR_EXT:000013524 denotes Pygo2
T26880 67-72 PR_EXT:000013523 denotes Pygo1
T26879 53-63 GO:0010467 denotes expression
T26878 40-43 GO_EXT:0015925 denotes gal
T9284 772-787 UBERON:0004199 denotes S-shaped bodies
T9283 802-811 UBERON:0000074 denotes glomeruli
T9282 789-796 UBERON:0009773 denotes tubules
T9281 756-761 _FRAGMENT denotes renal
T9280 756-770 UBERON:0004209 denotes renal vesicles
T9279 705-727 UBERON:0003220 denotes metanephric mesenchyme
T9278 678-700 UBERON:0003220 denotes metanephric mesenchyme
T9277 649-659 GO:0010467 denotes expression
T9276 626-629 GO_EXT:0015925 denotes gal
T9275 613-617 NCBITaxon:10088 denotes mice
T9274 603-612 SO_EXT:wild_type_entity_or_quality denotes wild-type
R1874 T9282 T9281 _lexicallyChainedTo tubules,renal
R1876 T9283 T9281 _lexicallyChainedTo glomeruli,renal

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T26870 278-288 GO:0010467 denotes expression
T26869 233-240 UBERON:0002113 denotes kidneys
T26868 224-229 PR:000013524 denotes Pygo2
T26867 215-220 PR:000013523 denotes Pygo1
T26866 202-207 PR:000013524 denotes Pygo2
T26865 193-198 PR:000013523 denotes Pygo1
T26864 183-188 PR:000013524 denotes Pygo2
T26863 174-179 PR:000013523 denotes Pygo1
T26862 102-111 SO:0000902 denotes Transgene
T26861 85-91 UBERON:0002113 denotes kidney
T26860 73-78 PR:000013524 denotes Pygo2
T26859 67-72 PR:000013523 denotes Pygo1
T26858 53-63 GO:0010467 denotes expression
T8977 772-787 UBERON:0004199 denotes S-shaped bodies
T8976 802-811 UBERON:0000074 denotes glomeruli
T8975 789-796 UBERON:0009773 denotes tubules
T8974 756-761 _FRAGMENT denotes renal
T8973 756-770 UBERON:0004209 denotes renal vesicles
T8972 705-727 UBERON:0003220 denotes metanephric mesenchyme
T8971 678-700 UBERON:0003220 denotes metanephric mesenchyme
T8970 649-659 GO:0010467 denotes expression
T8969 613-617 NCBITaxon:10088 denotes mice
T26877 497-504 SO:0001023 denotes alleles
T26876 491-496 PR:000013523 denotes Pygo1
T26875 435-445 GO:0010467 denotes expression
T26874 402-407 PR:000013524 denotes Pygo2
T26873 362-372 GO:0010467 denotes expression
T26872 318-323 PR:000013523 denotes Pygo1
T26871 297-302 PR:000013524 denotes Pygo2
R1852 T8975 T8974 _lexicallyChainedTo tubules,renal
R1853 T8976 T8974 _lexicallyChainedTo glomeruli,renal