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PMC:1858683 / 10285-11088 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T23292 761-764 DT denotes the
T23291 758-760 IN denotes in
T23290 735-748 RB denotes significantly
T23289 730-734 RB denotes also
T23288 726-729 VBD denotes was
T23287 713-721 JJ denotes ureteric
T23286 722-725 NN denotes bud
T23285 709-712 DT denotes the
T23284 697-708 VBG denotes surrounding
T23283 749-757 VBN denotes expanded
T23282 676-685 VBN denotes condensed
T23281 686-696 NN denotes mesenchyme
T23280 672-675 DT denotes The
T23279 671-773 sentence denotes The condensed mesenchyme surrounding the ureteric bud was also significantly expanded in the mutants.
T23278 670-671 . denotes .
T23277 662-670 NNS denotes controls
T23276 657-661 IN denotes with
T23275 648-656 VBN denotes compared
T23274 640-647 NNS denotes mutants
T23273 633-634 CD denotes 2
T23272 632-633 HYPH denotes /
T23271 635-639 JJ denotes null
T23270 627-632 NN denotes Pygo1
T23269 624-626 IN denotes in
T23268 616-623 JJ denotes dilated
T23267 611-615 RBR denotes more
T23266 605-610 RB denotes often
T23265 595-599 NNS denotes tips
T23264 591-594 NN denotes bud
T23263 582-590 JJ denotes ureteric
T23262 580-582 , denotes ,
T23261 572-580 NN denotes addition
T23260 600-604 VBD denotes were
T23259 569-571 IN denotes In
T23258 568-671 sentence denotes In addition, ureteric bud tips were often more dilated in Pygo1/2 null mutants compared with controls.
T23257 567-568 . denotes .
T23256 548-555 NN denotes control
T23255 546-547 -RRB- denotes )
T23254 556-567 NNS denotes littermates
T23253 543-545 , denotes ,
T23252 542-543 NN denotes A
T23251 545-546 NN denotes C
T23250 541-542 -LRB- denotes (
T23249 536-540 IN denotes with
T23248 527-535 VBN denotes compared
T23247 514-518 JJ denotes null
T23246 507-508 HYPH denotes /
T23245 508-513 NN denotes Pygo2
T23244 502-507 NN denotes Pygo1
T23243 498-501 DT denotes the
T23242 496-497 -RRB- denotes )
T23241 519-526 NNS denotes kidneys
T23240 493-495 , denotes ,
T23239 492-493 NN denotes B
T23238 495-496 NN denotes D
T23237 491-492 -LRB- denotes (
T23236 488-490 IN denotes in
T23235 475-478 VBD denotes was
T23234 470-474 NN denotes area
T23233 466-469 IN denotes per
T23232 461-465 NNS denotes tips
T23231 452-460 JJ denotes ureteric
T23230 449-451 IN denotes of
T23229 479-487 VBN denotes observed
T23228 434-441 VBN denotes reduced
T23227 442-448 NN denotes number
T23226 432-433 DT denotes A
T23225 431-568 sentence denotes A reduced number of ureteric tips per area was observed in (B, D) the Pygo1/Pygo2 null kidneys compared with (A, C) control littermates.
T23224 430-431 . denotes .
T23223 428-430 NN denotes μm
T23222 424-425 SYM denotes –
T23221 425-427 CD denotes 80
T23220 422-424 CD denotes 75
T23219 418-421 IN denotes for
T23218 413-414 CD denotes 5
T23217 415-417 NN denotes μm
T23216 407-412 DT denotes every
T23215 393-397 VBD denotes were
T23214 398-406 VBN denotes obtained
T23213 383-384 HYPH denotes -
T23212 382-383 NN denotes Z
T23211 384-392 NNS denotes sections
T23210 373-381 JJ denotes Confocal
T23209 372-431 sentence denotes Confocal Z-sections were obtained every 5 μm for 75–80 μm.
T23208 371-372 . denotes .
T23207 370-371 -RRB- denotes ]
T23206 368-370 CD denotes 16
T23205 367-368 -LRB- denotes [
T23204 353-361 JJ denotes ureteric
T23203 362-366 NN denotes tree
T23202 349-352 DT denotes the
T23201 340-348 VBG denotes staining
T23200 333-339 NN denotes lectin
T23199 329-332 NN denotes DBA
T23198 325-328 CC denotes and
T23197 323-325 , denotes ,
T23196 322-323 -RRB- denotes )
T23195 318-322 NN denotes blue
T23194 317-318 -LRB- denotes (
T23193 307-316 NNS denotes epithelia
T23192 304-306 IN denotes of
T23191 289-296 JJ denotes general
T23190 297-303 NN denotes marker
T23189 287-288 DT denotes a
T23188 285-287 , denotes ,
T23187 281-285 NN denotes Cdh1
T23186 279-281 , denotes ,
T23185 276-279 NN denotes red
T23184 273-275 IN denotes as
T23183 265-272 VBN denotes colored
T23182 261-264 CC denotes and
T23181 259-261 , denotes ,
T23180 237-248 JJ denotes metanephric
T23179 226-236 VBG denotes condensing
T23178 249-259 NN denotes mesenchyme
T23177 222-225 DT denotes the
T23176 219-221 IN denotes in
T23175 209-218 VBN denotes expressed
T23174 204-208 RB denotes both
T23173 202-204 , denotes ,
T23172 197-198 -RRB- denotes )
T23171 199-202 NN denotes Wt1
T23170 194-196 , denotes ,
T23169 193-194 NN denotes A
T23168 196-197 NN denotes B
T23167 192-193 -LRB- denotes (
T23166 189-191 CC denotes or
T23165 180-181 -RRB- denotes )
T23164 182-188 NN denotes Cited1
T23163 177-179 , denotes ,
T23162 176-177 NN denotes C
T23161 179-180 NN denotes D
T23160 175-176 -LRB- denotes (
T23159 172-174 IN denotes to
T23129 56-57 LS denotes B
T23128 55-56 -LRB- denotes (
T23127 54-372 sentence denotes (B, D) Pygo1-/-/Pygo2-/- mutant E18.5 kidneys and (A, C) kidneys of normal littermates were stained using antibodies to (C, D) Cited1 or (A, B) Wt1, both expressed in the condensing metanephric mesenchyme, and colored as red, Cdh1, a general marker of epithelia (blue), and DBA lectin staining the ureteric tree [16].
T23126 53-54 . denotes .
T23125 40-45 NN denotes E18.5
T23124 46-53 NNS denotes kidneys
T23123 33-39 NN denotes mutant
T23122 26-27 HYPH denotes /
T23121 27-32 NN denotes Pygo2
T23120 21-26 NN denotes Pygo1
T23119 18-20 IN denotes of
T23118 9-17 NN denotes analysis
T23117 0-8 JJ denotes Confocal
T23158 161-171 NNS denotes antibodies
T23157 155-160 VBG denotes using
T23156 142-146 VBD denotes were
T23155 130-141 NNS denotes littermates
T23154 123-129 JJ denotes normal
T23153 120-122 IN denotes of
T23152 110-111 -RRB- denotes )
T23151 112-119 NNS denotes kidneys
T23150 107-109 , denotes ,
T23149 106-107 NN denotes A
T23148 109-110 NN denotes C
T23147 105-106 -LRB- denotes (
T23146 101-104 CC denotes and
T23145 87-92 NN denotes E18.5
T23144 93-100 NNS denotes kidneys
T23143 78-79 SYM denotes -
T23142 77-78 HYPH denotes /
T23141 76-77 SYM denotes -
T23140 71-76 NN denotes Pygo2
T23139 70-71 HYPH denotes /
T23138 69-70 SYM denotes -
T23137 68-69 HYPH denotes /
T23136 67-68 SYM denotes -
T23135 80-86 NN denotes mutant
T23134 62-67 NN denotes Pygo1
T23133 60-61 -RRB- denotes )
T23132 59-60 LS denotes D
T23131 57-59 , denotes ,
T23130 147-154 VBN denotes stained
T23300 802-803 . denotes .
T23299 797-798 SYM denotes ×
T23298 799-802 CD denotes 200
T23297 783-796 NN denotes magnification
T23296 774-782 JJ denotes Original
T23295 773-803 sentence denotes Original magnification × 200.
T23294 772-773 . denotes .
T23293 765-772 NNS denotes mutants
R6579 T23117 T23118 amod Confocal,analysis
R6580 T23119 T23118 prep of,analysis
R6581 T23120 T23121 compound Pygo1,Pygo2
R6582 T23121 T23123 compound Pygo2,mutant
R6583 T23122 T23121 punct /,Pygo2
R6584 T23123 T23124 compound mutant,kidneys
R6585 T23124 T23119 pobj kidneys,of
R6586 T23125 T23124 compound E18.5,kidneys
R6587 T23126 T23118 punct .,analysis
R6588 T23128 T23129 punct (,B
R6589 T23129 T23130 meta B,stained
R6590 T23131 T23129 punct ", ",B
R6591 T23132 T23129 dep D,B
R6592 T23133 T23129 punct ),B
R6593 T23134 T23135 nmod Pygo1,mutant
R6594 T23135 T23144 compound mutant,kidneys
R6595 T23136 T23134 punct -,Pygo1
R6596 T23137 T23134 punct /,Pygo1
R6597 T23138 T23134 punct -,Pygo1
R6598 T23139 T23134 punct /,Pygo1
R6599 T23140 T23134 appos Pygo2,Pygo1
R6600 T23141 T23140 punct -,Pygo2
R6601 T23142 T23140 punct /,Pygo2
R6602 T23143 T23140 punct -,Pygo2
R6603 T23144 T23130 nsubjpass kidneys,stained
R6604 T23145 T23144 compound E18.5,kidneys
R6605 T23146 T23144 cc and,kidneys
R6606 T23147 T23148 punct (,C
R6607 T23148 T23151 parataxis C,kidneys
R6608 T23149 T23148 nmod A,C
R6609 T23150 T23148 punct ", ",C
R6610 T23151 T23144 conj kidneys,kidneys
R6611 T23152 T23148 punct ),C
R6612 T23153 T23151 prep of,kidneys
R6613 T23154 T23155 amod normal,littermates
R6614 T23155 T23153 pobj littermates,of
R6615 T23156 T23130 auxpass were,stained
R6616 T23157 T23130 advcl using,stained
R6617 T23158 T23157 dobj antibodies,using
R6618 T23159 T23158 prep to,antibodies
R6619 T23160 T23161 punct (,D
R6620 T23161 T23164 parataxis D,Cited1
R6621 T23162 T23161 nmod C,D
R6622 T23163 T23161 punct ", ",D
R6623 T23164 T23159 pobj Cited1,to
R6624 T23165 T23161 punct ),D
R6625 T23166 T23164 cc or,Cited1
R6626 T23167 T23168 punct (,B
R6627 T23168 T23171 parataxis B,Wt1
R6628 T23169 T23168 nmod A,B
R6629 T23170 T23168 punct ", ",B
R6630 T23171 T23164 conj Wt1,Cited1
R6631 T23172 T23168 punct ),B
R6632 T23173 T23164 punct ", ",Cited1
R6633 T23174 T23175 advmod both,expressed
R6634 T23175 T23164 acl expressed,Cited1
R6635 T23176 T23175 prep in,expressed
R6636 T23177 T23178 det the,mesenchyme
R6637 T23178 T23176 pobj mesenchyme,in
R6638 T23179 T23178 amod condensing,mesenchyme
R6639 T23180 T23178 amod metanephric,mesenchyme
R6640 T23181 T23175 punct ", ",expressed
R6641 T23182 T23175 cc and,expressed
R6642 T23183 T23175 conj colored,expressed
R6643 T23184 T23183 prep as,colored
R6644 T23185 T23184 pobj red,as
R6645 T23186 T23164 punct ", ",Cited1
R6646 T23187 T23164 conj Cdh1,Cited1
R6647 T23188 T23187 punct ", ",Cdh1
R6648 T23189 T23190 det a,marker
R6649 T23190 T23187 appos marker,Cdh1
R6650 T23191 T23190 amod general,marker
R6651 T23192 T23190 prep of,marker
R6652 T23193 T23192 pobj epithelia,of
R6653 T23194 T23195 punct (,blue
R6654 T23195 T23187 parataxis blue,Cdh1
R6655 T23196 T23195 punct ),blue
R6656 T23197 T23187 punct ", ",Cdh1
R6657 T23198 T23187 cc and,Cdh1
R6658 T23199 T23200 compound DBA,lectin
R6659 T23200 T23187 conj lectin,Cdh1
R6660 T23201 T23200 acl staining,lectin
R6661 T23202 T23203 det the,tree
R6662 T23203 T23201 dobj tree,staining
R6663 T23204 T23203 amod ureteric,tree
R6664 T23205 T23206 punct [,16
R6665 T23206 T23201 parataxis 16,staining
R6666 T23207 T23206 punct ],16
R6667 T23208 T23130 punct .,stained
R6668 T23210 T23211 amod Confocal,sections
R6669 T23211 T23214 nsubjpass sections,obtained
R6670 T23212 T23211 compound Z,sections
R6671 T23213 T23211 punct -,sections
R6672 T23215 T23214 auxpass were,obtained
R6673 T23216 T23217 det every,μm
R6674 T23217 T23214 dobj μm,obtained
R6675 T23218 T23217 nummod 5,μm
R6676 T23219 T23214 prep for,obtained
R6677 T23220 T23221 quantmod 75,80
R6678 T23221 T23223 nummod 80,μm
R6679 T23222 T23221 punct –,80
R6680 T23223 T23219 pobj μm,for
R6681 T23224 T23214 punct .,obtained
R6682 T23226 T23227 det A,number
R6683 T23227 T23229 nsubjpass number,observed
R6684 T23228 T23227 amod reduced,number
R6685 T23230 T23227 prep of,number
R6686 T23231 T23232 amod ureteric,tips
R6687 T23232 T23230 pobj tips,of
R6688 T23233 T23232 prep per,tips
R6689 T23234 T23233 pobj area,per
R6690 T23235 T23229 auxpass was,observed
R6691 T23236 T23229 prep in,observed
R6692 T23237 T23238 punct (,D
R6693 T23238 T23241 parataxis D,kidneys
R6694 T23239 T23238 nmod B,D
R6695 T23240 T23238 punct ", ",D
R6696 T23241 T23236 pobj kidneys,in
R6697 T23242 T23238 punct ),D
R6698 T23243 T23241 det the,kidneys
R6699 T23244 T23245 compound Pygo1,Pygo2
R6700 T23245 T23247 npadvmod Pygo2,null
R6701 T23246 T23245 punct /,Pygo2
R6702 T23247 T23241 amod null,kidneys
R6703 T23248 T23229 prep compared,observed
R6704 T23249 T23248 prep with,compared
R6705 T23250 T23251 punct (,C
R6706 T23251 T23254 parataxis C,littermates
R6707 T23252 T23251 nmod A,C
R6708 T23253 T23251 punct ", ",C
R6709 T23254 T23249 pobj littermates,with
R6710 T23255 T23251 punct ),C
R6711 T23256 T23254 compound control,littermates
R6712 T23257 T23229 punct .,observed
R6713 T23259 T23260 prep In,were
R6714 T23261 T23259 pobj addition,In
R6715 T23262 T23260 punct ", ",were
R6716 T23263 T23264 amod ureteric,bud
R6717 T23264 T23265 compound bud,tips
R6718 T23265 T23260 nsubj tips,were
R6719 T23266 T23260 advmod often,were
R6720 T23267 T23268 advmod more,dilated
R6721 T23268 T23260 acomp dilated,were
R6722 T23269 T23260 prep in,were
R6723 T23270 T23271 npadvmod Pygo1,null
R6724 T23271 T23274 amod null,mutants
R6725 T23272 T23270 punct /,Pygo1
R6726 T23273 T23270 nummod 2,Pygo1
R6727 T23274 T23269 pobj mutants,in
R6728 T23275 T23260 prep compared,were
R6729 T23276 T23275 prep with,compared
R6730 T23277 T23276 pobj controls,with
R6731 T23278 T23260 punct .,were
R6732 T23280 T23281 det The,mesenchyme
R6733 T23281 T23283 nsubjpass mesenchyme,expanded
R6734 T23282 T23281 amod condensed,mesenchyme
R6735 T23284 T23281 acl surrounding,mesenchyme
R6736 T23285 T23286 det the,bud
R6737 T23286 T23284 dobj bud,surrounding
R6738 T23287 T23286 amod ureteric,bud
R6739 T23288 T23283 auxpass was,expanded
R6740 T23289 T23283 advmod also,expanded
R6741 T23290 T23283 advmod significantly,expanded
R6742 T23291 T23283 prep in,expanded
R6743 T23292 T23293 det the,mutants
R6744 T23293 T23291 pobj mutants,in
R6745 T23294 T23283 punct .,expanded
R6746 T23296 T23297 amod Original,magnification
R6747 T23297 T23298 dep magnification,200
R6748 T23299 T23298 punct ×,200
R6749 T23300 T23298 punct .,200

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23090 71-76 PR_EXT:000013524 denotes Pygo2
T23116 765-772 SO_EXT:sequence_altered_entity denotes mutants
T23115 713-725 UBERON:0000084 denotes ureteric bud
T23114 686-696 UBERON:0003104 denotes mesenchyme
T23113 640-647 SO_EXT:sequence_altered_entity denotes mutants
T23112 635-639 SO_EXT:sequence_nullness denotes null
T23111 627-632 PR_EXT:000013523 denotes Pygo1
T23110 582-599 UBERON:0006364 denotes ureteric bud tips
T23109 519-526 UBERON:0002113 denotes kidneys
T23108 514-518 SO_EXT:sequence_nullness denotes null
T23107 508-513 PR_EXT:000013524 denotes Pygo2
T23106 502-507 PR_EXT:000013523 denotes Pygo1
T23105 452-465 UBERON:0006364 denotes ureteric tips
T23104 353-361 UBERON:0000056 denotes ureteric
T23103 307-316 UBERON:0000483 denotes epithelia
T23102 297-303 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T23101 281-285 PR_EXT:000001447 denotes Cdh1
T23100 237-259 UBERON:0003220 denotes metanephric mesenchyme
T23099 209-218 GO:0010467 denotes expressed
T23098 199-202 PR_EXT:000017459 denotes Wt1
T23097 182-188 PR_EXT:000005505 denotes Cited1
T23096 161-171 GO:0042571 denotes antibodies
T23095 112-119 UBERON:0002113 denotes kidneys
T23094 93-100 UBERON:0002113 denotes kidneys
T23093 80-86 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T23092 78-79 SO_EXT:sequence_nullness_or_absence denotes -
T23091 76-77 SO_EXT:sequence_nullness_or_absence denotes -
T23089 69-70 SO_EXT:sequence_nullness_or_absence denotes -
T23088 67-68 SO_EXT:sequence_nullness_or_absence denotes -
T23087 62-67 PR_EXT:000013523 denotes Pygo1
T23086 46-53 UBERON:0002113 denotes kidneys
T23085 33-39 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T23084 27-32 PR_EXT:000013524 denotes Pygo2
T23083 21-26 PR_EXT:000013523 denotes Pygo1

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23082 713-725 UBERON:0000084 denotes ureteric bud
T23081 686-696 UBERON:0003104 denotes mesenchyme
T23080 627-632 PR:000013523 denotes Pygo1
T23079 582-599 UBERON:0006364 denotes ureteric bud tips
T23078 519-526 UBERON:0002113 denotes kidneys
T23077 508-513 PR:000013524 denotes Pygo2
T23076 502-507 PR:000013523 denotes Pygo1
T23075 452-465 UBERON:0006364 denotes ureteric tips
T23074 353-361 UBERON:0000056 denotes ureteric
T23073 307-316 UBERON:0000483 denotes epithelia
T23072 281-285 PR:000001447 denotes Cdh1
T23071 237-259 UBERON:0003220 denotes metanephric mesenchyme
T23070 209-218 GO:0010467 denotes expressed
T23069 199-202 PR:000017459 denotes Wt1
T23068 182-188 PR:000005505 denotes Cited1
T23067 161-171 GO:0042571 denotes antibodies
T23066 112-119 UBERON:0002113 denotes kidneys
T23065 93-100 UBERON:0002113 denotes kidneys
T23064 71-76 PR:000013524 denotes Pygo2
T23063 62-67 PR:000013523 denotes Pygo1
T23062 46-53 UBERON:0002113 denotes kidneys
T23061 27-32 PR:000013524 denotes Pygo2
T23060 21-26 PR:000013523 denotes Pygo1