> top > docs > PMC:1858683 > spans > 10275-11088 > annotations

PMC:1858683 / 10275-11088 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T23292 771-774 DT denotes the
T23291 768-770 IN denotes in
T23290 745-758 RB denotes significantly
T23289 740-744 RB denotes also
T23288 736-739 VBD denotes was
T23287 723-731 JJ denotes ureteric
T23286 732-735 NN denotes bud
T23285 719-722 DT denotes the
T23284 707-718 VBG denotes surrounding
T23283 759-767 VBN denotes expanded
T23282 686-695 VBN denotes condensed
T23281 696-706 NN denotes mesenchyme
T23280 682-685 DT denotes The
T23279 681-783 sentence denotes The condensed mesenchyme surrounding the ureteric bud was also significantly expanded in the mutants.
T23278 680-681 . denotes .
T23277 672-680 NNS denotes controls
T23276 667-671 IN denotes with
T23275 658-666 VBN denotes compared
T23274 650-657 NNS denotes mutants
T23273 643-644 CD denotes 2
T23272 642-643 HYPH denotes /
T23271 645-649 JJ denotes null
T23270 637-642 NN denotes Pygo1
T23269 634-636 IN denotes in
T23268 626-633 JJ denotes dilated
T23267 621-625 RBR denotes more
T23266 615-620 RB denotes often
T23265 605-609 NNS denotes tips
T23264 601-604 NN denotes bud
T23263 592-600 JJ denotes ureteric
T23262 590-592 , denotes ,
T23261 582-590 NN denotes addition
T23260 610-614 VBD denotes were
T23259 579-581 IN denotes In
T23258 578-681 sentence denotes In addition, ureteric bud tips were often more dilated in Pygo1/2 null mutants compared with controls.
T23257 577-578 . denotes .
T23256 558-565 NN denotes control
T23255 556-557 -RRB- denotes )
T23254 566-577 NNS denotes littermates
T23253 553-555 , denotes ,
T23252 552-553 NN denotes A
T23251 555-556 NN denotes C
T23250 551-552 -LRB- denotes (
T23249 546-550 IN denotes with
T23248 537-545 VBN denotes compared
T23247 524-528 JJ denotes null
T23246 517-518 HYPH denotes /
T23245 518-523 NN denotes Pygo2
T23244 512-517 NN denotes Pygo1
T23243 508-511 DT denotes the
T23242 506-507 -RRB- denotes )
T23241 529-536 NNS denotes kidneys
T23240 503-505 , denotes ,
T23239 502-503 NN denotes B
T23238 505-506 NN denotes D
T23237 501-502 -LRB- denotes (
T23236 498-500 IN denotes in
T23235 485-488 VBD denotes was
T23234 480-484 NN denotes area
T23233 476-479 IN denotes per
T23232 471-475 NNS denotes tips
T23231 462-470 JJ denotes ureteric
T23230 459-461 IN denotes of
T23229 489-497 VBN denotes observed
T23228 444-451 VBN denotes reduced
T23227 452-458 NN denotes number
T23226 442-443 DT denotes A
T23225 441-578 sentence denotes A reduced number of ureteric tips per area was observed in (B, D) the Pygo1/Pygo2 null kidneys compared with (A, C) control littermates.
T23224 440-441 . denotes .
T23223 438-440 NN denotes μm
T23222 434-435 SYM denotes –
T23221 435-437 CD denotes 80
T23220 432-434 CD denotes 75
T23219 428-431 IN denotes for
T23218 423-424 CD denotes 5
T23217 425-427 NN denotes μm
T23216 417-422 DT denotes every
T23215 403-407 VBD denotes were
T23214 408-416 VBN denotes obtained
T23213 393-394 HYPH denotes -
T23212 392-393 NN denotes Z
T23211 394-402 NNS denotes sections
T23210 383-391 JJ denotes Confocal
T23209 382-441 sentence denotes Confocal Z-sections were obtained every 5 μm for 75–80 μm.
T23208 381-382 . denotes .
T23207 380-381 -RRB- denotes ]
T23206 378-380 CD denotes 16
T23205 377-378 -LRB- denotes [
T23204 363-371 JJ denotes ureteric
T23203 372-376 NN denotes tree
T23202 359-362 DT denotes the
T23201 350-358 VBG denotes staining
T23200 343-349 NN denotes lectin
T23199 339-342 NN denotes DBA
T23198 335-338 CC denotes and
T23197 333-335 , denotes ,
T23196 332-333 -RRB- denotes )
T23195 328-332 NN denotes blue
T23194 327-328 -LRB- denotes (
T23193 317-326 NNS denotes epithelia
T23192 314-316 IN denotes of
T23191 299-306 JJ denotes general
T23190 307-313 NN denotes marker
T23189 297-298 DT denotes a
T23188 295-297 , denotes ,
T23187 291-295 NN denotes Cdh1
T23186 289-291 , denotes ,
T23185 286-289 NN denotes red
T23184 283-285 IN denotes as
T23183 275-282 VBN denotes colored
T23182 271-274 CC denotes and
T23181 269-271 , denotes ,
T23180 247-258 JJ denotes metanephric
T23179 236-246 VBG denotes condensing
T23178 259-269 NN denotes mesenchyme
T23177 232-235 DT denotes the
T23176 229-231 IN denotes in
T23175 219-228 VBN denotes expressed
T23174 214-218 RB denotes both
T23173 212-214 , denotes ,
T23172 207-208 -RRB- denotes )
T23171 209-212 NN denotes Wt1
T23170 204-206 , denotes ,
T23169 203-204 NN denotes A
T23168 206-207 NN denotes B
T23167 202-203 -LRB- denotes (
T23166 199-201 CC denotes or
T23165 190-191 -RRB- denotes )
T23164 192-198 NN denotes Cited1
T23163 187-189 , denotes ,
T23162 186-187 NN denotes C
T23161 189-190 NN denotes D
T23160 185-186 -LRB- denotes (
T23159 182-184 IN denotes to
T23129 66-67 LS denotes B
T23128 65-66 -LRB- denotes (
T23127 64-382 sentence denotes (B, D) Pygo1-/-/Pygo2-/- mutant E18.5 kidneys and (A, C) kidneys of normal littermates were stained using antibodies to (C, D) Cited1 or (A, B) Wt1, both expressed in the condensing metanephric mesenchyme, and colored as red, Cdh1, a general marker of epithelia (blue), and DBA lectin staining the ureteric tree [16].
T23126 63-64 . denotes .
T23125 50-55 NN denotes E18.5
T23124 56-63 NNS denotes kidneys
T23123 43-49 NN denotes mutant
T23122 36-37 HYPH denotes /
T23121 37-42 NN denotes Pygo2
T23120 31-36 NN denotes Pygo1
T23119 28-30 IN denotes of
T23118 19-27 NN denotes analysis
T23117 10-18 JJ denotes Confocal
T23158 171-181 NNS denotes antibodies
T23157 165-170 VBG denotes using
T23156 152-156 VBD denotes were
T23155 140-151 NNS denotes littermates
T23154 133-139 JJ denotes normal
T23153 130-132 IN denotes of
T23152 120-121 -RRB- denotes )
T23151 122-129 NNS denotes kidneys
T23150 117-119 , denotes ,
T23149 116-117 NN denotes A
T23148 119-120 NN denotes C
T23147 115-116 -LRB- denotes (
T23146 111-114 CC denotes and
T23145 97-102 NN denotes E18.5
T23144 103-110 NNS denotes kidneys
T23143 88-89 SYM denotes -
T23142 87-88 HYPH denotes /
T23141 86-87 SYM denotes -
T23140 81-86 NN denotes Pygo2
T23139 80-81 HYPH denotes /
T23138 79-80 SYM denotes -
T23137 78-79 HYPH denotes /
T23136 77-78 SYM denotes -
T23135 90-96 NN denotes mutant
T23134 72-77 NN denotes Pygo1
T23133 70-71 -RRB- denotes )
T23132 69-70 LS denotes D
T23131 67-69 , denotes ,
T23130 157-164 VBN denotes stained
T23300 812-813 . denotes .
T23299 807-808 SYM denotes ×
T23298 809-812 CD denotes 200
T23297 793-806 NN denotes magnification
T23296 784-792 JJ denotes Original
T23295 783-813 sentence denotes Original magnification × 200.
T23294 782-783 . denotes .
T23293 775-782 NNS denotes mutants
R6579 T23117 T23118 amod Confocal,analysis
R6580 T23119 T23118 prep of,analysis
R6581 T23120 T23121 compound Pygo1,Pygo2
R6582 T23121 T23123 compound Pygo2,mutant
R6583 T23122 T23121 punct /,Pygo2
R6584 T23123 T23124 compound mutant,kidneys
R6585 T23124 T23119 pobj kidneys,of
R6586 T23125 T23124 compound E18.5,kidneys
R6587 T23126 T23118 punct .,analysis
R6588 T23128 T23129 punct (,B
R6589 T23129 T23130 meta B,stained
R6590 T23131 T23129 punct ", ",B
R6591 T23132 T23129 dep D,B
R6592 T23133 T23129 punct ),B
R6593 T23134 T23135 nmod Pygo1,mutant
R6594 T23135 T23144 compound mutant,kidneys
R6595 T23136 T23134 punct -,Pygo1
R6596 T23137 T23134 punct /,Pygo1
R6597 T23138 T23134 punct -,Pygo1
R6598 T23139 T23134 punct /,Pygo1
R6599 T23140 T23134 appos Pygo2,Pygo1
R6600 T23141 T23140 punct -,Pygo2
R6601 T23142 T23140 punct /,Pygo2
R6602 T23143 T23140 punct -,Pygo2
R6603 T23144 T23130 nsubjpass kidneys,stained
R6604 T23145 T23144 compound E18.5,kidneys
R6605 T23146 T23144 cc and,kidneys
R6606 T23147 T23148 punct (,C
R6607 T23148 T23151 parataxis C,kidneys
R6608 T23149 T23148 nmod A,C
R6609 T23150 T23148 punct ", ",C
R6610 T23151 T23144 conj kidneys,kidneys
R6611 T23152 T23148 punct ),C
R6612 T23153 T23151 prep of,kidneys
R6613 T23154 T23155 amod normal,littermates
R6614 T23155 T23153 pobj littermates,of
R6615 T23156 T23130 auxpass were,stained
R6616 T23157 T23130 advcl using,stained
R6617 T23158 T23157 dobj antibodies,using
R6618 T23159 T23158 prep to,antibodies
R6619 T23160 T23161 punct (,D
R6620 T23161 T23164 parataxis D,Cited1
R6621 T23162 T23161 nmod C,D
R6622 T23163 T23161 punct ", ",D
R6623 T23164 T23159 pobj Cited1,to
R6624 T23165 T23161 punct ),D
R6625 T23166 T23164 cc or,Cited1
R6626 T23167 T23168 punct (,B
R6627 T23168 T23171 parataxis B,Wt1
R6628 T23169 T23168 nmod A,B
R6629 T23170 T23168 punct ", ",B
R6630 T23171 T23164 conj Wt1,Cited1
R6631 T23172 T23168 punct ),B
R6632 T23173 T23164 punct ", ",Cited1
R6633 T23174 T23175 advmod both,expressed
R6634 T23175 T23164 acl expressed,Cited1
R6635 T23176 T23175 prep in,expressed
R6636 T23177 T23178 det the,mesenchyme
R6637 T23178 T23176 pobj mesenchyme,in
R6638 T23179 T23178 amod condensing,mesenchyme
R6639 T23180 T23178 amod metanephric,mesenchyme
R6640 T23181 T23175 punct ", ",expressed
R6641 T23182 T23175 cc and,expressed
R6642 T23183 T23175 conj colored,expressed
R6643 T23184 T23183 prep as,colored
R6644 T23185 T23184 pobj red,as
R6645 T23186 T23164 punct ", ",Cited1
R6646 T23187 T23164 conj Cdh1,Cited1
R6647 T23188 T23187 punct ", ",Cdh1
R6648 T23189 T23190 det a,marker
R6649 T23190 T23187 appos marker,Cdh1
R6650 T23191 T23190 amod general,marker
R6651 T23192 T23190 prep of,marker
R6652 T23193 T23192 pobj epithelia,of
R6653 T23194 T23195 punct (,blue
R6654 T23195 T23187 parataxis blue,Cdh1
R6655 T23196 T23195 punct ),blue
R6656 T23197 T23187 punct ", ",Cdh1
R6657 T23198 T23187 cc and,Cdh1
R6658 T23199 T23200 compound DBA,lectin
R6659 T23200 T23187 conj lectin,Cdh1
R6660 T23201 T23200 acl staining,lectin
R6661 T23202 T23203 det the,tree
R6662 T23203 T23201 dobj tree,staining
R6663 T23204 T23203 amod ureteric,tree
R6664 T23205 T23206 punct [,16
R6665 T23206 T23201 parataxis 16,staining
R6666 T23207 T23206 punct ],16
R6667 T23208 T23130 punct .,stained
R6668 T23210 T23211 amod Confocal,sections
R6669 T23211 T23214 nsubjpass sections,obtained
R6670 T23212 T23211 compound Z,sections
R6671 T23213 T23211 punct -,sections
R6672 T23215 T23214 auxpass were,obtained
R6673 T23216 T23217 det every,μm
R6674 T23217 T23214 dobj μm,obtained
R6675 T23218 T23217 nummod 5,μm
R6676 T23219 T23214 prep for,obtained
R6677 T23220 T23221 quantmod 75,80
R6678 T23221 T23223 nummod 80,μm
R6679 T23222 T23221 punct –,80
R6680 T23223 T23219 pobj μm,for
R6681 T23224 T23214 punct .,obtained
R6682 T23226 T23227 det A,number
R6683 T23227 T23229 nsubjpass number,observed
R6684 T23228 T23227 amod reduced,number
R6685 T23230 T23227 prep of,number
R6686 T23231 T23232 amod ureteric,tips
R6687 T23232 T23230 pobj tips,of
R6688 T23233 T23232 prep per,tips
R6689 T23234 T23233 pobj area,per
R6690 T23235 T23229 auxpass was,observed
R6691 T23236 T23229 prep in,observed
R6692 T23237 T23238 punct (,D
R6693 T23238 T23241 parataxis D,kidneys
R6694 T23239 T23238 nmod B,D
R6695 T23240 T23238 punct ", ",D
R6696 T23241 T23236 pobj kidneys,in
R6697 T23242 T23238 punct ),D
R6698 T23243 T23241 det the,kidneys
R6699 T23244 T23245 compound Pygo1,Pygo2
R6700 T23245 T23247 npadvmod Pygo2,null
R6701 T23246 T23245 punct /,Pygo2
R6702 T23247 T23241 amod null,kidneys
R6703 T23248 T23229 prep compared,observed
R6704 T23249 T23248 prep with,compared
R6705 T23250 T23251 punct (,C
R6706 T23251 T23254 parataxis C,littermates
R6707 T23252 T23251 nmod A,C
R6708 T23253 T23251 punct ", ",C
R6709 T23254 T23249 pobj littermates,with
R6710 T23255 T23251 punct ),C
R6711 T23256 T23254 compound control,littermates
R6712 T23257 T23229 punct .,observed
R6713 T23259 T23260 prep In,were
R6714 T23261 T23259 pobj addition,In
R6715 T23262 T23260 punct ", ",were
R6716 T23263 T23264 amod ureteric,bud
R6717 T23264 T23265 compound bud,tips
R6718 T23265 T23260 nsubj tips,were
R6719 T23266 T23260 advmod often,were
R6720 T23267 T23268 advmod more,dilated
R6721 T23268 T23260 acomp dilated,were
R6722 T23269 T23260 prep in,were
R6723 T23270 T23271 npadvmod Pygo1,null
R6724 T23271 T23274 amod null,mutants
R6725 T23272 T23270 punct /,Pygo1
R6726 T23273 T23270 nummod 2,Pygo1
R6727 T23274 T23269 pobj mutants,in
R6728 T23275 T23260 prep compared,were
R6729 T23276 T23275 prep with,compared
R6730 T23277 T23276 pobj controls,with
R6731 T23278 T23260 punct .,were
R6732 T23280 T23281 det The,mesenchyme
R6733 T23281 T23283 nsubjpass mesenchyme,expanded
R6734 T23282 T23281 amod condensed,mesenchyme
R6735 T23284 T23281 acl surrounding,mesenchyme
R6736 T23285 T23286 det the,bud
R6737 T23286 T23284 dobj bud,surrounding
R6738 T23287 T23286 amod ureteric,bud
R6739 T23288 T23283 auxpass was,expanded
R6740 T23289 T23283 advmod also,expanded
R6741 T23290 T23283 advmod significantly,expanded
R6742 T23291 T23283 prep in,expanded
R6743 T23292 T23293 det the,mutants
R6744 T23293 T23291 pobj mutants,in
R6745 T23294 T23283 punct .,expanded
R6746 T23296 T23297 amod Original,magnification
R6747 T23297 T23298 dep magnification,200
R6748 T23299 T23298 punct ×,200
R6749 T23300 T23298 punct .,200

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23090 81-86 PR_EXT:000013524 denotes Pygo2
T23116 775-782 SO_EXT:sequence_altered_entity denotes mutants
T23115 723-735 UBERON:0000084 denotes ureteric bud
T23114 696-706 UBERON:0003104 denotes mesenchyme
T23113 650-657 SO_EXT:sequence_altered_entity denotes mutants
T23112 645-649 SO_EXT:sequence_nullness denotes null
T23111 637-642 PR_EXT:000013523 denotes Pygo1
T23110 592-609 UBERON:0006364 denotes ureteric bud tips
T23109 529-536 UBERON:0002113 denotes kidneys
T23108 524-528 SO_EXT:sequence_nullness denotes null
T23107 518-523 PR_EXT:000013524 denotes Pygo2
T23106 512-517 PR_EXT:000013523 denotes Pygo1
T23105 462-475 UBERON:0006364 denotes ureteric tips
T23104 363-371 UBERON:0000056 denotes ureteric
T23103 317-326 UBERON:0000483 denotes epithelia
T23102 307-313 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes marker
T23101 291-295 PR_EXT:000001447 denotes Cdh1
T23100 247-269 UBERON:0003220 denotes metanephric mesenchyme
T23099 219-228 GO:0010467 denotes expressed
T23098 209-212 PR_EXT:000017459 denotes Wt1
T23097 192-198 PR_EXT:000005505 denotes Cited1
T23096 171-181 GO:0042571 denotes antibodies
T23095 122-129 UBERON:0002113 denotes kidneys
T23094 103-110 UBERON:0002113 denotes kidneys
T23093 90-96 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T23092 88-89 SO_EXT:sequence_nullness_or_absence denotes -
T23091 86-87 SO_EXT:sequence_nullness_or_absence denotes -
T23089 79-80 SO_EXT:sequence_nullness_or_absence denotes -
T23088 77-78 SO_EXT:sequence_nullness_or_absence denotes -
T23087 72-77 PR_EXT:000013523 denotes Pygo1
T23086 56-63 UBERON:0002113 denotes kidneys
T23085 43-49 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T23084 37-42 PR_EXT:000013524 denotes Pygo2
T23083 31-36 PR_EXT:000013523 denotes Pygo1

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T23082 723-735 UBERON:0000084 denotes ureteric bud
T23081 696-706 UBERON:0003104 denotes mesenchyme
T23080 637-642 PR:000013523 denotes Pygo1
T23079 592-609 UBERON:0006364 denotes ureteric bud tips
T23078 529-536 UBERON:0002113 denotes kidneys
T23077 518-523 PR:000013524 denotes Pygo2
T23076 512-517 PR:000013523 denotes Pygo1
T23075 462-475 UBERON:0006364 denotes ureteric tips
T23074 363-371 UBERON:0000056 denotes ureteric
T23073 317-326 UBERON:0000483 denotes epithelia
T23072 291-295 PR:000001447 denotes Cdh1
T23071 247-269 UBERON:0003220 denotes metanephric mesenchyme
T23070 219-228 GO:0010467 denotes expressed
T23069 209-212 PR:000017459 denotes Wt1
T23068 192-198 PR:000005505 denotes Cited1
T23067 171-181 GO:0042571 denotes antibodies
T23066 122-129 UBERON:0002113 denotes kidneys
T23065 103-110 UBERON:0002113 denotes kidneys
T23064 81-86 PR:000013524 denotes Pygo2
T23063 72-77 PR:000013523 denotes Pygo1
T23062 56-63 UBERON:0002113 denotes kidneys
T23061 37-42 PR:000013524 denotes Pygo2
T23060 31-36 PR:000013523 denotes Pygo1