> top > docs > PMC:1853120 > spans > 50316-51022 > annotations

PMC:1853120 / 50316-51022 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T27238 224-234 VBG denotes containing
T27187 0-7 JJ denotes Meiotic
T27188 8-18 NN denotes chromosome
T27189 26-38 NNS denotes preparations
T27190 19-25 NN denotes spread
T27191 44-48 VBN denotes made
T27192 39-43 VBD denotes were
T27193 49-53 IN denotes from
T27194 54-55 CD denotes 3
T27195 56-58 NN denotes wk
T27196 55-56 HYPH denotes -
T27197 59-62 JJ denotes old
T27198 58-59 HYPH denotes -
T27199 63-67 NNS denotes mice
T27200 67-69 , denotes ,
T27201 69-77 VBN denotes prepared
T27202 78-80 IN denotes as
T27203 81-90 VBN denotes described
T27204 91-93 IN denotes by
T27205 94-103 NNP denotes Reinholdt
T27206 104-106 FW denotes et
T27207 107-110 FW denotes al.
T27208 111-112 -LRB- denotes [
T27209 112-114 CD denotes 63
T27210 114-115 -RRB- denotes ]
T27211 115-116 . denotes .
T27212 116-216 sentence denotes For analysis of PMSC and Cot-1 RNA FISH, meiotic slides were prepared as previously described [16].
T27213 117-120 IN denotes For
T27214 178-186 VBN denotes prepared
T27215 121-129 NN denotes analysis
T27216 130-132 IN denotes of
T27217 133-137 NN denotes PMSC
T27218 138-141 CC denotes and
T27219 142-145 NN denotes Cot
T27220 152-156 NN denotes FISH
T27221 145-146 HYPH denotes -
T27222 146-147 CD denotes 1
T27223 148-151 NN denotes RNA
T27224 156-158 , denotes ,
T27225 158-165 JJ denotes meiotic
T27226 166-172 NNS denotes slides
T27227 173-177 VBD denotes were
T27228 187-189 IN denotes as
T27229 201-210 VBN denotes described
T27230 190-200 RB denotes previously
T27231 211-212 -LRB- denotes [
T27232 212-214 CD denotes 16
T27233 214-215 -RRB- denotes ]
T27234 215-216 . denotes .
T27235 216-369 sentence denotes Slides containing chromosome spreads or meiotic spermatocytes were subjected to immunofluorescent staining or RNA FISH, as previously described [16,63].
T27236 217-223 NNS denotes Slides
T27237 284-293 VBN denotes subjected
T27239 235-245 NN denotes chromosome
T27240 246-253 NNS denotes spreads
T27241 254-256 CC denotes or
T27242 257-264 JJ denotes meiotic
T27243 265-278 NNS denotes spermatocytes
T27244 279-283 VBD denotes were
T27245 294-296 IN denotes to
T27246 297-314 JJ denotes immunofluorescent
T27247 315-323 NN denotes staining
T27248 324-326 CC denotes or
T27249 327-330 NN denotes RNA
T27250 331-335 NN denotes FISH
T27251 335-337 , denotes ,
T27252 337-339 IN denotes as
T27253 351-360 VBN denotes described
T27254 340-350 RB denotes previously
T27255 361-362 -LRB- denotes [
T27256 365-367 CD denotes 63
T27257 362-364 CD denotes 16
T27258 364-365 , denotes ,
T27259 367-368 -RRB- denotes ]
T27260 368-369 . denotes .
T27261 369-470 sentence denotes For combined RNA FISH/immunostaining, we carried out RNA FISH first, followed by immunofluorescence.
T27262 370-373 IN denotes For
T27263 411-418 VBD denotes carried
T27264 374-382 VBN denotes combined
T27265 387-391 NN denotes FISH
T27266 383-386 NN denotes RNA
T27267 391-392 HYPH denotes /
T27268 392-406 NN denotes immunostaining
T27269 406-408 , denotes ,
T27270 408-410 PRP denotes we
T27271 419-422 RP denotes out
T27272 423-426 NN denotes RNA
T27273 427-431 NN denotes FISH
T27274 432-437 RB denotes first
T27275 437-439 , denotes ,
T27276 439-447 VBN denotes followed
T27277 448-450 IN denotes by
T27278 451-469 NN denotes immunofluorescence
T27279 469-470 . denotes .
T27280 470-554 sentence denotes DNA FISH was performed using chromosome painting (Cambio, http://www.cambio.co.uk).
T27281 471-474 NN denotes DNA
T27282 475-479 NN denotes FISH
T27283 484-493 VBN denotes performed
T27284 480-483 VBD denotes was
T27285 494-499 VBG denotes using
T27286 500-510 NN denotes chromosome
T27287 511-519 NN denotes painting
T27288 520-521 -LRB- denotes (
T27289 521-527 NNP denotes Cambio
T27290 527-529 , denotes ,
T27291 529-552 NN denotes http://www.cambio.co.uk
T27292 552-553 -RRB- denotes )
T27293 553-554 . denotes .
T27294 554-706 sentence denotes Z-sections were captured by Zeiss Axioplan microscope (Zeiss, http://www.zeiss.com) and processed by Openlab (Improvision, http://www.improvision.com).
T27295 555-556 NN denotes Z
T27296 557-565 NNS denotes sections
T27297 556-557 HYPH denotes -
T27298 571-579 VBN denotes captured
T27299 566-570 VBD denotes were
T27300 580-582 IN denotes by
T27301 583-588 NNP denotes Zeiss
T27302 598-608 NN denotes microscope
T27303 589-597 NNP denotes Axioplan
T27304 609-610 -LRB- denotes (
T27305 610-615 NNP denotes Zeiss
T27306 615-617 , denotes ,
T27307 617-637 NN denotes http://www.zeiss.com
T27308 637-638 -RRB- denotes )
T27309 639-642 CC denotes and
T27310 643-652 VBN denotes processed
T27311 653-655 IN denotes by
T27312 656-663 NNP denotes Openlab
T27313 664-665 -LRB- denotes (
T27314 665-676 NNP denotes Improvision
T27315 676-678 , denotes ,
T27316 678-704 NN denotes http://www.improvision.com
T27317 704-705 -RRB- denotes )
T27318 705-706 . denotes .
R7583 T27187 T27188 amod Meiotic,chromosome
R7584 T27188 T27189 compound chromosome,preparations
R7585 T27189 T27191 nsubjpass preparations,made
R7586 T27190 T27189 compound spread,preparations
R7587 T27192 T27191 auxpass were,made
R7588 T27193 T27191 prep from,made
R7589 T27194 T27195 nummod 3,wk
R7590 T27195 T27197 npadvmod wk,old
R7591 T27196 T27195 punct -,wk
R7592 T27197 T27199 amod old,mice
R7593 T27198 T27197 punct -,old
R7594 T27199 T27193 pobj mice,from
R7595 T27200 T27191 punct ", ",made
R7596 T27201 T27191 advcl prepared,made
R7597 T27202 T27203 mark as,described
R7598 T27203 T27201 advcl described,prepared
R7599 T27204 T27203 agent by,described
R7600 T27205 T27204 pobj Reinholdt,by
R7601 T27206 T27207 advmod et,al.
R7602 T27207 T27205 advmod al.,Reinholdt
R7603 T27208 T27209 punct [,63
R7604 T27209 T27191 parataxis 63,made
R7605 T27210 T27209 punct ],63
R7606 T27211 T27191 punct .,made
R7607 T27213 T27214 prep For,prepared
R7608 T27215 T27213 pobj analysis,For
R7609 T27216 T27215 prep of,analysis
R7610 T27217 T27216 pobj PMSC,of
R7611 T27218 T27217 cc and,PMSC
R7612 T27219 T27220 nmod Cot,FISH
R7613 T27220 T27217 conj FISH,PMSC
R7614 T27221 T27219 punct -,Cot
R7615 T27222 T27219 nummod 1,Cot
R7616 T27223 T27220 compound RNA,FISH
R7617 T27224 T27214 punct ", ",prepared
R7618 T27225 T27226 amod meiotic,slides
R7619 T27226 T27214 nsubjpass slides,prepared
R7620 T27227 T27214 auxpass were,prepared
R7621 T27228 T27229 mark as,described
R7622 T27229 T27214 advcl described,prepared
R7623 T27230 T27229 advmod previously,described
R7624 T27231 T27232 punct [,16
R7625 T27232 T27214 parataxis 16,prepared
R7626 T27233 T27232 punct ],16
R7627 T27234 T27214 punct .,prepared
R7628 T27236 T27237 nsubjpass Slides,subjected
R7629 T27238 T27236 acl containing,Slides
R7630 T27239 T27240 compound chromosome,spreads
R7631 T27240 T27238 dobj spreads,containing
R7632 T27241 T27240 cc or,spreads
R7633 T27242 T27243 amod meiotic,spermatocytes
R7634 T27243 T27240 conj spermatocytes,spreads
R7635 T27244 T27237 auxpass were,subjected
R7636 T27245 T27237 prep to,subjected
R7637 T27246 T27247 amod immunofluorescent,staining
R7638 T27247 T27245 pobj staining,to
R7639 T27248 T27247 cc or,staining
R7640 T27249 T27250 compound RNA,FISH
R7641 T27250 T27247 conj FISH,staining
R7642 T27251 T27237 punct ", ",subjected
R7643 T27252 T27253 mark as,described
R7644 T27253 T27237 advcl described,subjected
R7645 T27254 T27253 advmod previously,described
R7646 T27255 T27256 punct [,63
R7647 T27256 T27237 parataxis 63,subjected
R7648 T27257 T27256 nummod 16,63
R7649 T27258 T27256 punct ",",63
R7650 T27259 T27256 punct ],63
R7651 T27260 T27237 punct .,subjected
R7652 T27262 T27263 prep For,carried
R7653 T27264 T27265 amod combined,FISH
R7654 T27265 T27262 pobj FISH,For
R7655 T27266 T27265 compound RNA,FISH
R7656 T27267 T27265 punct /,FISH
R7657 T27268 T27265 appos immunostaining,FISH
R7658 T27269 T27263 punct ", ",carried
R7659 T27270 T27263 nsubj we,carried
R7660 T27271 T27263 prt out,carried
R7661 T27272 T27273 compound RNA,FISH
R7662 T27273 T27263 dobj FISH,carried
R7663 T27274 T27263 advmod first,carried
R7664 T27275 T27263 punct ", ",carried
R7665 T27276 T27263 advcl followed,carried
R7666 T27277 T27276 agent by,followed
R7667 T27278 T27277 pobj immunofluorescence,by
R7668 T27279 T27263 punct .,carried
R7669 T27281 T27282 compound DNA,FISH
R7670 T27282 T27283 nsubjpass FISH,performed
R7671 T27284 T27283 auxpass was,performed
R7672 T27285 T27283 advcl using,performed
R7673 T27286 T27287 compound chromosome,painting
R7674 T27287 T27285 dobj painting,using
R7675 T27288 T27289 punct (,Cambio
R7676 T27289 T27287 parataxis Cambio,painting
R7677 T27290 T27289 punct ", ",Cambio
R7678 T27291 T27289 npadvmod http://www.cambio.co.uk,Cambio
R7679 T27292 T27289 punct ),Cambio
R7680 T27293 T27283 punct .,performed
R7681 T27295 T27296 compound Z,sections
R7682 T27296 T27298 nsubjpass sections,captured
R7683 T27297 T27296 punct -,sections
R7684 T27299 T27298 auxpass were,captured
R7685 T27300 T27298 prep by,captured
R7686 T27301 T27302 compound Zeiss,microscope
R7687 T27302 T27300 pobj microscope,by
R7688 T27303 T27302 compound Axioplan,microscope
R7689 T27304 T27305 punct (,Zeiss
R7690 T27305 T27302 parataxis Zeiss,microscope
R7691 T27306 T27305 punct ", ",Zeiss
R7692 T27307 T27305 npadvmod http://www.zeiss.com,Zeiss
R7693 T27308 T27305 punct ),Zeiss
R7694 T27309 T27298 cc and,captured
R7695 T27310 T27298 conj processed,captured
R7696 T27311 T27310 prep by,processed
R7697 T27312 T27311 pobj Openlab,by
R7698 T27313 T27314 punct (,Improvision
R7699 T27314 T27312 parataxis Improvision,Openlab
R7700 T27315 T27314 punct ", ",Improvision
R7701 T27316 T27314 npadvmod http://www.improvision.com,Improvision
R7702 T27317 T27314 punct ),Improvision
R7703 T27318 T27298 punct .,captured

2_test

Id Subject Object Predicate Lexical cue
17447844-14769957-85805867 112-114 14769957 denotes 63
17447844-16581510-85805868 212-214 16581510 denotes 16
17447844-16581510-85805869 362-364 16581510 denotes 16
17447844-14769957-85805870 365-367 14769957 denotes 63
T29559 112-114 14769957 denotes 63
T14023 212-214 16581510 denotes 16
T63628 362-364 16581510 denotes 16
T61380 365-367 14769957 denotes 63

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27159 0-7 GO:0007126 denotes Meiotic
T27160 63-67 NCBITaxon:10088 denotes mice
T27161 158-165 GO:0007126 denotes meiotic
T27162 257-264 GO:0007126 denotes meiotic
T27163 265-278 CL:0000017 denotes spermatocytes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27177 471-474 CHEBI_SO_EXT:DNA denotes DNA
T27166 0-7 GO:0007126 denotes Meiotic
T27167 8-18 GO_SO_EXT:chromosome denotes chromosome
T27168 63-67 NCBITaxon:10088 denotes mice
T27169 148-151 CHEBI_SO_EXT:RNA denotes RNA
T27170 158-165 GO:0007126 denotes meiotic
T27171 235-245 GO_SO_EXT:chromosome denotes chromosome
T27172 257-264 GO:0007126 denotes meiotic
T27173 265-278 CL:0000017 denotes spermatocytes
T27174 327-330 CHEBI_SO_EXT:RNA denotes RNA
T27175 383-386 CHEBI_SO_EXT:RNA denotes RNA
T27176 423-426 CHEBI_SO_EXT:RNA denotes RNA
T27178 500-510 GO_SO_EXT:chromosome denotes chromosome