> top > docs > PMC:1853120 > spans > 50267-51022 > annotations

PMC:1853120 / 50267-51022 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T27238 273-283 VBG denotes containing
T27179 0-7 JJ denotes Meiotic
T27180 8-18 NN denotes chromosome
T27181 26-38 NNS denotes preparations
T27182 19-25 NN denotes spread
T27183 39-42 CC denotes and
T27184 43-47 NN denotes FISH
T27185 47-48 . denotes .
T27186 48-165 sentence denotes Meiotic chromosome spread preparations were made from 3-wk-old mice, prepared as described by Reinholdt et al. [63].
T27187 49-56 JJ denotes Meiotic
T27188 57-67 NN denotes chromosome
T27189 75-87 NNS denotes preparations
T27190 68-74 NN denotes spread
T27191 93-97 VBN denotes made
T27192 88-92 VBD denotes were
T27193 98-102 IN denotes from
T27194 103-104 CD denotes 3
T27195 105-107 NN denotes wk
T27196 104-105 HYPH denotes -
T27197 108-111 JJ denotes old
T27198 107-108 HYPH denotes -
T27199 112-116 NNS denotes mice
T27200 116-118 , denotes ,
T27201 118-126 VBN denotes prepared
T27202 127-129 IN denotes as
T27203 130-139 VBN denotes described
T27204 140-142 IN denotes by
T27205 143-152 NNP denotes Reinholdt
T27206 153-155 FW denotes et
T27207 156-159 FW denotes al.
T27208 160-161 -LRB- denotes [
T27209 161-163 CD denotes 63
T27210 163-164 -RRB- denotes ]
T27211 164-165 . denotes .
T27212 165-265 sentence denotes For analysis of PMSC and Cot-1 RNA FISH, meiotic slides were prepared as previously described [16].
T27213 166-169 IN denotes For
T27214 227-235 VBN denotes prepared
T27215 170-178 NN denotes analysis
T27216 179-181 IN denotes of
T27217 182-186 NN denotes PMSC
T27218 187-190 CC denotes and
T27219 191-194 NN denotes Cot
T27220 201-205 NN denotes FISH
T27221 194-195 HYPH denotes -
T27222 195-196 CD denotes 1
T27223 197-200 NN denotes RNA
T27224 205-207 , denotes ,
T27225 207-214 JJ denotes meiotic
T27226 215-221 NNS denotes slides
T27227 222-226 VBD denotes were
T27228 236-238 IN denotes as
T27229 250-259 VBN denotes described
T27230 239-249 RB denotes previously
T27231 260-261 -LRB- denotes [
T27232 261-263 CD denotes 16
T27233 263-264 -RRB- denotes ]
T27234 264-265 . denotes .
T27235 265-418 sentence denotes Slides containing chromosome spreads or meiotic spermatocytes were subjected to immunofluorescent staining or RNA FISH, as previously described [16,63].
T27236 266-272 NNS denotes Slides
T27237 333-342 VBN denotes subjected
T27239 284-294 NN denotes chromosome
T27240 295-302 NNS denotes spreads
T27241 303-305 CC denotes or
T27242 306-313 JJ denotes meiotic
T27243 314-327 NNS denotes spermatocytes
T27244 328-332 VBD denotes were
T27245 343-345 IN denotes to
T27246 346-363 JJ denotes immunofluorescent
T27247 364-372 NN denotes staining
T27248 373-375 CC denotes or
T27249 376-379 NN denotes RNA
T27250 380-384 NN denotes FISH
T27251 384-386 , denotes ,
T27252 386-388 IN denotes as
T27253 400-409 VBN denotes described
T27254 389-399 RB denotes previously
T27255 410-411 -LRB- denotes [
T27256 414-416 CD denotes 63
T27257 411-413 CD denotes 16
T27258 413-414 , denotes ,
T27259 416-417 -RRB- denotes ]
T27260 417-418 . denotes .
T27261 418-519 sentence denotes For combined RNA FISH/immunostaining, we carried out RNA FISH first, followed by immunofluorescence.
T27262 419-422 IN denotes For
T27263 460-467 VBD denotes carried
T27264 423-431 VBN denotes combined
T27265 436-440 NN denotes FISH
T27266 432-435 NN denotes RNA
T27267 440-441 HYPH denotes /
T27268 441-455 NN denotes immunostaining
T27269 455-457 , denotes ,
T27270 457-459 PRP denotes we
T27271 468-471 RP denotes out
T27272 472-475 NN denotes RNA
T27273 476-480 NN denotes FISH
T27274 481-486 RB denotes first
T27275 486-488 , denotes ,
T27276 488-496 VBN denotes followed
T27277 497-499 IN denotes by
T27278 500-518 NN denotes immunofluorescence
T27279 518-519 . denotes .
T27280 519-603 sentence denotes DNA FISH was performed using chromosome painting (Cambio, http://www.cambio.co.uk).
T27281 520-523 NN denotes DNA
T27282 524-528 NN denotes FISH
T27283 533-542 VBN denotes performed
T27284 529-532 VBD denotes was
T27285 543-548 VBG denotes using
T27286 549-559 NN denotes chromosome
T27287 560-568 NN denotes painting
T27288 569-570 -LRB- denotes (
T27289 570-576 NNP denotes Cambio
T27290 576-578 , denotes ,
T27291 578-601 NN denotes http://www.cambio.co.uk
T27292 601-602 -RRB- denotes )
T27293 602-603 . denotes .
T27294 603-755 sentence denotes Z-sections were captured by Zeiss Axioplan microscope (Zeiss, http://www.zeiss.com) and processed by Openlab (Improvision, http://www.improvision.com).
T27295 604-605 NN denotes Z
T27296 606-614 NNS denotes sections
T27297 605-606 HYPH denotes -
T27298 620-628 VBN denotes captured
T27299 615-619 VBD denotes were
T27300 629-631 IN denotes by
T27301 632-637 NNP denotes Zeiss
T27302 647-657 NN denotes microscope
T27303 638-646 NNP denotes Axioplan
T27304 658-659 -LRB- denotes (
T27305 659-664 NNP denotes Zeiss
T27306 664-666 , denotes ,
T27307 666-686 NN denotes http://www.zeiss.com
T27308 686-687 -RRB- denotes )
T27309 688-691 CC denotes and
T27310 692-701 VBN denotes processed
T27311 702-704 IN denotes by
T27312 705-712 NNP denotes Openlab
T27313 713-714 -LRB- denotes (
T27314 714-725 NNP denotes Improvision
T27315 725-727 , denotes ,
T27316 727-753 NN denotes http://www.improvision.com
T27317 753-754 -RRB- denotes )
T27318 754-755 . denotes .
R7577 T27179 T27180 amod Meiotic,chromosome
R7578 T27180 T27181 compound chromosome,preparations
R7579 T27182 T27181 compound spread,preparations
R7580 T27183 T27181 cc and,preparations
R7581 T27184 T27181 conj FISH,preparations
R7582 T27185 T27184 punct .,FISH
R7583 T27187 T27188 amod Meiotic,chromosome
R7584 T27188 T27189 compound chromosome,preparations
R7585 T27189 T27191 nsubjpass preparations,made
R7586 T27190 T27189 compound spread,preparations
R7587 T27192 T27191 auxpass were,made
R7588 T27193 T27191 prep from,made
R7589 T27194 T27195 nummod 3,wk
R7590 T27195 T27197 npadvmod wk,old
R7591 T27196 T27195 punct -,wk
R7592 T27197 T27199 amod old,mice
R7593 T27198 T27197 punct -,old
R7594 T27199 T27193 pobj mice,from
R7595 T27200 T27191 punct ", ",made
R7596 T27201 T27191 advcl prepared,made
R7597 T27202 T27203 mark as,described
R7598 T27203 T27201 advcl described,prepared
R7599 T27204 T27203 agent by,described
R7600 T27205 T27204 pobj Reinholdt,by
R7601 T27206 T27207 advmod et,al.
R7602 T27207 T27205 advmod al.,Reinholdt
R7603 T27208 T27209 punct [,63
R7604 T27209 T27191 parataxis 63,made
R7605 T27210 T27209 punct ],63
R7606 T27211 T27191 punct .,made
R7607 T27213 T27214 prep For,prepared
R7608 T27215 T27213 pobj analysis,For
R7609 T27216 T27215 prep of,analysis
R7610 T27217 T27216 pobj PMSC,of
R7611 T27218 T27217 cc and,PMSC
R7612 T27219 T27220 nmod Cot,FISH
R7613 T27220 T27217 conj FISH,PMSC
R7614 T27221 T27219 punct -,Cot
R7615 T27222 T27219 nummod 1,Cot
R7616 T27223 T27220 compound RNA,FISH
R7617 T27224 T27214 punct ", ",prepared
R7618 T27225 T27226 amod meiotic,slides
R7619 T27226 T27214 nsubjpass slides,prepared
R7620 T27227 T27214 auxpass were,prepared
R7621 T27228 T27229 mark as,described
R7622 T27229 T27214 advcl described,prepared
R7623 T27230 T27229 advmod previously,described
R7624 T27231 T27232 punct [,16
R7625 T27232 T27214 parataxis 16,prepared
R7626 T27233 T27232 punct ],16
R7627 T27234 T27214 punct .,prepared
R7628 T27236 T27237 nsubjpass Slides,subjected
R7629 T27238 T27236 acl containing,Slides
R7630 T27239 T27240 compound chromosome,spreads
R7631 T27240 T27238 dobj spreads,containing
R7632 T27241 T27240 cc or,spreads
R7633 T27242 T27243 amod meiotic,spermatocytes
R7634 T27243 T27240 conj spermatocytes,spreads
R7635 T27244 T27237 auxpass were,subjected
R7636 T27245 T27237 prep to,subjected
R7637 T27246 T27247 amod immunofluorescent,staining
R7638 T27247 T27245 pobj staining,to
R7639 T27248 T27247 cc or,staining
R7640 T27249 T27250 compound RNA,FISH
R7641 T27250 T27247 conj FISH,staining
R7642 T27251 T27237 punct ", ",subjected
R7643 T27252 T27253 mark as,described
R7644 T27253 T27237 advcl described,subjected
R7645 T27254 T27253 advmod previously,described
R7646 T27255 T27256 punct [,63
R7647 T27256 T27237 parataxis 63,subjected
R7648 T27257 T27256 nummod 16,63
R7649 T27258 T27256 punct ",",63
R7650 T27259 T27256 punct ],63
R7651 T27260 T27237 punct .,subjected
R7652 T27262 T27263 prep For,carried
R7653 T27264 T27265 amod combined,FISH
R7654 T27265 T27262 pobj FISH,For
R7655 T27266 T27265 compound RNA,FISH
R7656 T27267 T27265 punct /,FISH
R7657 T27268 T27265 appos immunostaining,FISH
R7658 T27269 T27263 punct ", ",carried
R7659 T27270 T27263 nsubj we,carried
R7660 T27271 T27263 prt out,carried
R7661 T27272 T27273 compound RNA,FISH
R7662 T27273 T27263 dobj FISH,carried
R7663 T27274 T27263 advmod first,carried
R7664 T27275 T27263 punct ", ",carried
R7665 T27276 T27263 advcl followed,carried
R7666 T27277 T27276 agent by,followed
R7667 T27278 T27277 pobj immunofluorescence,by
R7668 T27279 T27263 punct .,carried
R7669 T27281 T27282 compound DNA,FISH
R7670 T27282 T27283 nsubjpass FISH,performed
R7671 T27284 T27283 auxpass was,performed
R7672 T27285 T27283 advcl using,performed
R7673 T27286 T27287 compound chromosome,painting
R7674 T27287 T27285 dobj painting,using
R7675 T27288 T27289 punct (,Cambio
R7676 T27289 T27287 parataxis Cambio,painting
R7677 T27290 T27289 punct ", ",Cambio
R7678 T27291 T27289 npadvmod http://www.cambio.co.uk,Cambio
R7679 T27292 T27289 punct ),Cambio
R7680 T27293 T27283 punct .,performed
R7681 T27295 T27296 compound Z,sections
R7682 T27296 T27298 nsubjpass sections,captured
R7683 T27297 T27296 punct -,sections
R7684 T27299 T27298 auxpass were,captured
R7685 T27300 T27298 prep by,captured
R7686 T27301 T27302 compound Zeiss,microscope
R7687 T27302 T27300 pobj microscope,by
R7688 T27303 T27302 compound Axioplan,microscope
R7689 T27304 T27305 punct (,Zeiss
R7690 T27305 T27302 parataxis Zeiss,microscope
R7691 T27306 T27305 punct ", ",Zeiss
R7692 T27307 T27305 npadvmod http://www.zeiss.com,Zeiss
R7693 T27308 T27305 punct ),Zeiss
R7694 T27309 T27298 cc and,captured
R7695 T27310 T27298 conj processed,captured
R7696 T27311 T27310 prep by,processed
R7697 T27312 T27311 pobj Openlab,by
R7698 T27313 T27314 punct (,Improvision
R7699 T27314 T27312 parataxis Improvision,Openlab
R7700 T27315 T27314 punct ", ",Improvision
R7701 T27316 T27314 npadvmod http://www.improvision.com,Improvision
R7702 T27317 T27314 punct ),Improvision
R7703 T27318 T27298 punct .,captured

2_test

Id Subject Object Predicate Lexical cue
17447844-14769957-85805867 161-163 14769957 denotes 63
17447844-16581510-85805868 261-263 16581510 denotes 16
17447844-16581510-85805869 411-413 16581510 denotes 16
17447844-14769957-85805870 414-416 14769957 denotes 63
T29559 161-163 14769957 denotes 63
T14023 261-263 16581510 denotes 16
T63628 411-413 16581510 denotes 16
T61380 414-416 14769957 denotes 63

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27158 0-7 GO:0007126 denotes Meiotic
T27159 49-56 GO:0007126 denotes Meiotic
T27160 112-116 NCBITaxon:10088 denotes mice
T27161 207-214 GO:0007126 denotes meiotic
T27162 306-313 GO:0007126 denotes meiotic
T27163 314-327 CL:0000017 denotes spermatocytes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T27177 520-523 CHEBI_SO_EXT:DNA denotes DNA
T27164 0-7 GO:0007126 denotes Meiotic
T27165 8-18 GO_SO_EXT:chromosome denotes chromosome
T27166 49-56 GO:0007126 denotes Meiotic
T27167 57-67 GO_SO_EXT:chromosome denotes chromosome
T27168 112-116 NCBITaxon:10088 denotes mice
T27169 197-200 CHEBI_SO_EXT:RNA denotes RNA
T27170 207-214 GO:0007126 denotes meiotic
T27171 284-294 GO_SO_EXT:chromosome denotes chromosome
T27172 306-313 GO:0007126 denotes meiotic
T27173 314-327 CL:0000017 denotes spermatocytes
T27174 376-379 CHEBI_SO_EXT:RNA denotes RNA
T27175 432-435 CHEBI_SO_EXT:RNA denotes RNA
T27176 472-475 CHEBI_SO_EXT:RNA denotes RNA
T27178 549-559 GO_SO_EXT:chromosome denotes chromosome